View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19239_high_23 (Length: 347)

Name: NF19239_high_23
Description: NF19239
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19239_high_23
NF19239_high_23
[»] chr6 (3 HSPs)
chr6 (12-124)||(2422897-2423009)
chr6 (261-342)||(2423128-2423209)
chr6 (143-186)||(2423010-2423053)
[»] chr4 (1 HSPs)
chr4 (266-338)||(21059223-21059295)
[»] scaffold0854 (1 HSPs)
scaffold0854 (272-338)||(770-836)
[»] chr5 (1 HSPs)
chr5 (266-315)||(42454987-42455036)
[»] chr3 (1 HSPs)
chr3 (266-327)||(7754464-7754525)
[»] chr2 (1 HSPs)
chr2 (266-327)||(37133961-37134022)
[»] chr1 (1 HSPs)
chr1 (266-327)||(12159026-12159087)
[»] chr7 (1 HSPs)
chr7 (266-334)||(12087138-12087206)


Alignment Details
Target: chr6 (Bit Score: 105; Significance: 2e-52; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 12 - 124
Target Start/End: Original strand, 2422897 - 2423009
Alignment:
Q  12 atgatgattttaagtgaagtggatattactttttcaaaagaagcaatagtttcaaactttatctcactttattcaagcctcgttacaaacttttggaagt 111  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  2422897 atgatgatttttagtgaagtggatattactttttcaaaagaagcaatagtttcaaaatttatctcactttattcaagcctcgttacaaacttttggaagt 2422996  T
Q  112 ccttgaatatccg 124  Q
    |||||||||||||    
T  2422997 ccttgaatatccg 2423009  T

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Target: chr6; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 261 - 342
Target Start/End: Original strand, 2423128 - 2423209
Alignment:
Q  261 agaacattgtcgtgtaaagacaatttcattattgtgcgttattgttgttctatgtctaattggtctaaattttgtgcctatg 342  Q
    |||| |||||| ||| ||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||| |||||    
T  2423128 agaatattgtcatgtgaagacaatttcattattgtgccttattgttgttctatgtctgattggtctaaattttgtgtctatg 2423209  T

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Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 143 - 186
Target Start/End: Original strand, 2423010 - 2423053
Alignment:
Q  143 acgcaacatataaatatacgagtaattgactaattgtcactttc 186  Q
    |||||||||||||||| |||||||||||||||||||||||||||    
T  2423010 acgcaacatataaatacacgagtaattgactaattgtcactttc 2423053  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 266 - 338
Target Start/End: Original strand, 21059223 - 21059295
Alignment:
Q  266 attgtcgtgtaaagacaatttcattattgtgcgttattgttgttctatgtctaattggtctaaattttgtgcc 338  Q
    ||||| |||| ||| ||| |||||| |||||| |||| ||| ||||||||||| |||||||| ||||||||||    
T  21059223 attgttgtgtgaaggcaaattcattgttgtgccttatcgtttttctatgtctatttggtctagattttgtgcc 21059295  T

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Target: scaffold0854 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0854
Description:

Target: scaffold0854; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 272 - 338
Target Start/End: Complemental strand, 836 - 770
Alignment:
Q  272 gtgtaaagacaatttcattattgtgcgttattgttgttctatgtctaattggtctaaattttgtgcc 338  Q
    |||| ||||||||||||||||||||| |||| ||| |||||| |||  ||||||||  |||||||||    
T  836 gtgtgaagacaatttcattattgtgccttatcgtttttctatatctggttggtctaggttttgtgcc 770  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 266 - 315
Target Start/End: Original strand, 42454987 - 42455036
Alignment:
Q  266 attgtcgtgtaaagacaatttcattattgtgcgttattgttgttctatgt 315  Q
    |||||||||| || |||||||||||||| | | |||||||||||||||||    
T  42454987 attgtcgtgtgaaaacaatttcattattataccttattgttgttctatgt 42455036  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 266 - 327
Target Start/End: Original strand, 7754464 - 7754525
Alignment:
Q  266 attgtcgtgtaaagacaatttcattattgtgcgttattgttgttctatgtctaattggtcta 327  Q
    ||||| |||| |||||||||||||| |||||| |||| ||| ||||||||||  ||||||||    
T  7754464 attgttgtgtgaagacaatttcattgttgtgctttatcgtttttctatgtctctttggtcta 7754525  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 266 - 327
Target Start/End: Complemental strand, 37134022 - 37133961
Alignment:
Q  266 attgtcgtgtaaagacaatttcattattgtgcgttattgttgttctatgtctaattggtcta 327  Q
    ||||| |||| ||| ||||||||||||||||| |||| ||| ||||||||||  ||||||||    
T  37134022 attgttgtgtgaaggcaatttcattattgtgccttatcgtttttctatgtctgtttggtcta 37133961  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 266 - 327
Target Start/End: Original strand, 12159026 - 12159087
Alignment:
Q  266 attgtcgtgtaaagacaatttcattattgtgcgttattgttgttctatgtctaattggtcta 327  Q
    ||||| |||| |||||||||||||| |||||| ||||  || ||||||||||| ||||||||    
T  12159026 attgttgtgtgaagacaatttcattgttgtgccttatcctttttctatgtctatttggtcta 12159087  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 266 - 334
Target Start/End: Original strand, 12087138 - 12087206
Alignment:
Q  266 attgtcgtgtaaagacaatttcattattgtgcgttattgttgttctatgtctaattggtctaaattttg 334  Q
    ||||| |||| |||||||||||||| |||||| |||| ||| |||||||||   ||||||||| |||||    
T  12087138 attgttgtgtgaagacaatttcattgttgtgccttatcgtttttctatgtcggtttggtctaagttttg 12087206  T

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