View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19239_high_30 (Length: 275)
Name: NF19239_high_30
Description: NF19239
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19239_high_30 |
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Alignment Details
Target: chr1 (Bit Score: 160; Significance: 2e-85; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 1 - 164
Target Start/End: Complemental strand, 50762144 - 50761981
Alignment:
| Q |
1 |
taattgttttgtgcccacggtgtcctcgtgttgcacgatgattgaattgaatcccatgacaaaaccaaataaaataataaatggaaagaggttggtaggt |
100 |
Q |
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| T |
50762144 |
taattgttttgtgcccacggagtcctcgtgttgcacgatgattgaattgaatcccatgacaaaaccaaataaaataataaatggaaagaggttggtaggt |
50762045 |
T |
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| Q |
101 |
gatgagaatccaaaatggaaatgaataaataataaatgaagcagcagtacaacaaagaagggac |
164 |
Q |
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| T |
50762044 |
gatgagaatccaaaatggaaatgaataaataataaatgaagcagcagtacaacaaagaagggac |
50761981 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 173 - 202
Target Start/End: Complemental strand, 50761959 - 50761930
Alignment:
| Q |
173 |
aataatatagatcaattcaatttaatcaat |
202 |
Q |
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| T |
50761959 |
aataatatagatcaattcaatttaatcaat |
50761930 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 83 - 140
Target Start/End: Complemental strand, 21250920 - 21250864
Alignment:
| Q |
83 |
ggaaagaggttggtaggtgatgagaatccaaaatggaaatgaataaataataaatgaa |
140 |
Q |
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| T |
21250920 |
ggaaagaggtaggtaggtgatgagaatg-aaaatggaaatgaataaataataaatgaa |
21250864 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 83 - 140
Target Start/End: Complemental strand, 21251843 - 21251788
Alignment:
| Q |
83 |
ggaaagaggttggtaggtgatgagaatccaaaatggaaatgaataaataataaatgaa |
140 |
Q |
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| T |
21251843 |
ggaaagaggtaggtaggtgatgtgaatcc-aaatgg-aatgaataaataataaatgaa |
21251788 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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