View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19239_high_4 (Length: 630)
Name: NF19239_high_4
Description: NF19239
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19239_high_4 |
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Alignment Details
Target: chr2 (Bit Score: 548; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 548; E-Value: 0
Query Start/End: Original strand, 1 - 611
Target Start/End: Complemental strand, 38892588 - 38891977
Alignment:
| Q |
1 |
caagtgaaaagtgagatttcaaattgttggatttaagtttgagtgattagttctacatcaattatgaatagacaaaacgttgaatatatatgagatgtga |
100 |
Q |
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| T |
38892588 |
caagtgaaaagtgagatttcaaattgttgggattaagtttgagtgattaattctacatcaattatgaatagacaaaacgttgaatatatatgagatgtga |
38892489 |
T |
|
| Q |
101 |
catatatacat-aatgttttaaggtttttagcgaagatatgatgtctccatcgcttataatcataggtaattggtttgttgttgctttcagtgctccttc |
199 |
Q |
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|||||| |||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||| |||||||||| |
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| T |
38892488 |
catatacacattaatgttttaaggttttgagcgaagatatgatgtctccatcgcttataatcataggtaattggttcgctgttgctttccgtgctccttc |
38892389 |
T |
|
| Q |
200 |
agaccacccaacaactaatataagagcttttggtttggaagtgttgttttggaaggttctagcttggaaagacttggtacttagacaagtccattgtgac |
299 |
Q |
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| T |
38892388 |
agaccacccaacaactaatataagagcttttggtttggaagtgttgttttggaaggttctagctaggaaagacttggtacttagacgagtccattgtgac |
38892289 |
T |
|
| Q |
300 |
ttgacctctctttattgggaacttctctagtgcatagttgtggtatggatacaattacaatcacaagtttcgttgtgaagtttggacgagagagaattga |
399 |
Q |
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| T |
38892288 |
ttgacctctctttattaggaacttctctagtgcatagttgtggtatggatacaattacaatcacaagttccgttgtgaagtttggacgagagagaattga |
38892189 |
T |
|
| Q |
400 |
tggaagaatcattttttggcttgtggaaaattcaagttaacaatgtgttgatacaatcaatattacacaaggtgtttcttagtacatggacattgattga |
499 |
Q |
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| T |
38892188 |
tggaagaatcattttttggcttgtggaaaattcaagttaacaatgtgttgatacaatcaatattacacaaggtgtttcttagtacatggacattgattga |
38892089 |
T |
|
| Q |
500 |
aattgatgcaaagtgtgtgtgagattacttcggcaattgaacaattttcaatcaacatggaagctgcatcataagttttcaaactaattttcaacatgtg |
599 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||| |
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| T |
38892088 |
aattgatgcaaagtgtgtgtgagattacttcggcaattgaacaattttcaatcaacatggaagctgcaccataagttttcaaactaattttcgacatgtg |
38891989 |
T |
|
| Q |
600 |
aaagttcatgga |
611 |
Q |
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|||||||||||| |
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| T |
38891988 |
aaagttcatgga |
38891977 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 442 - 526
Target Start/End: Complemental strand, 31795729 - 31795644
Alignment:
| Q |
442 |
atgtgttgatacaatcaatattacacaaggtgtttcttagtacatggacattgattgaaattgatgcaaagtgtg-tgtgagatta |
526 |
Q |
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| T |
31795729 |
atgtgttgatacaatcaagattacacaaggtgttgattagtacacgcgcattggttgacattgatacaaagtgtgttgtgagatta |
31795644 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000006; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 420 - 510
Target Start/End: Original strand, 12380575 - 12380664
Alignment:
| Q |
420 |
ttgtggaaaattcaagttaacaatgtgttgatacaatcaatattacacaaggtgtttcttagtacatggacattgattgaaattgatgcaa |
510 |
Q |
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| T |
12380575 |
ttgtgaaaaattcaagtaaaaaatgtgttgatacattcaagattacacaa-atattgattagtatatgagcattgattgacattgatgcaa |
12380664 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 420 - 510
Target Start/End: Original strand, 12384642 - 12384731
Alignment:
| Q |
420 |
ttgtggaaaattcaagttaacaatgtgttgatacaatcaatattacacaaggtgtttcttagtacatggacattgattgaaattgatgcaa |
510 |
Q |
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| T |
12384642 |
ttgtgaaaaattcaagtaaaaaatgtgttgatacattcaagattacacaa-atattgattagtatatgagcattgattgacattgatgcaa |
12384731 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 420 - 469
Target Start/End: Original strand, 12363599 - 12363648
Alignment:
| Q |
420 |
ttgtggaaaattcaagttaacaatgtgttgatacaatcaatattacacaa |
469 |
Q |
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||||| ||||||||||| || |||||||||||||| |||| ||||||||| |
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| T |
12363599 |
ttgtgaaaaattcaagtaaaaaatgtgttgatacattcaagattacacaa |
12363648 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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