View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19239_high_8 (Length: 537)

Name: NF19239_high_8
Description: NF19239
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19239_high_8
NF19239_high_8
[»] chr2 (2 HSPs)
chr2 (18-532)||(39544035-39544558)
chr2 (251-326)||(12545032-12545105)
[»] chr4 (2 HSPs)
chr4 (377-455)||(43096908-43096986)
chr4 (341-416)||(51747655-51747730)
[»] chr5 (4 HSPs)
chr5 (374-461)||(28727814-28727901)
chr5 (342-419)||(25537100-25537176)
chr5 (374-426)||(32008151-32008203)
chr5 (379-416)||(964261-964298)
[»] chr6 (1 HSPs)
chr6 (400-465)||(4119057-4119122)
[»] chr1 (2 HSPs)
chr1 (376-453)||(11064626-11064703)
chr1 (361-426)||(40368136-40368201)
[»] chr8 (1 HSPs)
chr8 (342-416)||(18887291-18887364)
[»] chr3 (4 HSPs)
chr3 (374-440)||(29687007-29687073)
chr3 (424-461)||(30333872-30333909)
chr3 (244-313)||(54605426-54605495)
chr3 (344-416)||(35258769-35258841)
[»] chr7 (1 HSPs)
chr7 (429-461)||(8145201-8145233)


Alignment Details
Target: chr2 (Bit Score: 351; Significance: 0; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 18 - 532
Target Start/End: Original strand, 39544035 - 39544558
Alignment:
Q  18 acggtcaaccaatctttcgataaattcatcacataacactatcgttttcaatacataatgt-----------------tttaagaaatatgtctaaacat 100  Q
    ||||||||||||||||||||||||| ||||| ||||||||||| ||||||||||||||||                  |||||||||||||||||| |||    
T  39544035 acggtcaaccaatctttcgataaatccatcatataacactatcattttcaatacataatggattaatgatcacactcatttaagaaatatgtctaaccat 39544134  T
Q  101 aatgtttttctaacaaatagtaacttttaagagatgaatttaatcatatccattaagtggagcacaaaagtctcatgtcccaaaatgatgtgagcattac 200  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39544135 aatatttttctaacaaatagtaacttttaagagatgaatttaatcatatccattaagtggagcacaaaagtctcatgtcccaaaatgatgtgagcattac 39544234  T
Q  201 gggacttttacaaggactggactagtaagactcataatctccatttttctccacctaagtctaacataatgctaaacaggcacgctaaatctgaaggtaa 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||    
T  39544235 gggacttttacaaggactggactagtaagactcataatctccatttttctccacctaagtctaacataatgctaagcaggcatgctaaatctgaaggtaa 39544334  T
Q  301 aacatactctcactccaaccaactaatattgcactaacatatgtaaatcataaacaatattttttcatcaaaatttgattttgatcaaaattataggtgt 400  Q
    || |||||||||||||| |||| ||||||||| |        |||||||||||||||||||||||||| |||||||||||||||| |||||||||||| |    
T  39544335 aatatactctcactccagccaattaatattgcgc--------gtaaatcataaacaatattttttcattaaaatttgattttgattaaaattataggtat 39544426  T
Q  401 aaatgtttgtgactttcaatttataatgaatcatgtttatctttttcgatgacaccaacaacatatgtccgttaatataaaatctatttgctcaaatcac 500  Q
    |||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||| |||||||||||||||||    
T  39544427 aaatgtttgtgacttttaatttgtaatgaatcatgtttatctttttcgatgacaccaacaacatatatccattaatataaaacctatttgctcaaatcac 39544526  T
Q  501 gggatgttaactccaaataaaatacaaaaatg 532  Q
    |||||||||| |||| ||||| | ||||||||    
T  39544527 gggatgttaattccatataaattgcaaaaatg 39544558  T

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Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 251 - 326
Target Start/End: Original strand, 12545032 - 12545105
Alignment:
Q  251 ccacctaagtctaacataatgctaaacaggcacgctaaatctgaaggtaaaacatactctcactccaaccaactaa 326  Q
    ||||||||||||| |||||| ||||  ||   |||||||||||||||||||||| |||||||||||||||| ||||    
T  12545032 ccacctaagtctagcataatactaagaag--tcgctaaatctgaaggtaaaacaaactctcactccaaccatctaa 12545105  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 377 - 455
Target Start/End: Original strand, 43096908 - 43096986
Alignment:
Q  377 gattttgatcaaaattataggtgtaaatgtttgtgactttcaatttataatgaatcatgtttatctttttcgatgacac 455  Q
    ||||||||| ||||||||||||||| || || |||||||| || ||||||  ||||||||||||| ||||| |||||||    
T  43096908 gattttgattaaaattataggtgtagatattcgtgactttaaaattataacaaatcatgtttatccttttcaatgacac 43096986  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 341 - 416
Target Start/End: Complemental strand, 51747730 - 51747655
Alignment:
Q  341 atgtaaatcataaacaatattttttcatcaaaatttgattttgatcaaaattataggtgtaaatgtttgtgacttt 416  Q
    |||||||| |||| ||||||||||| || ||||||| |||||| | |||||| || || |||||||||||||||||    
T  51747730 atgtaaattataagcaatatttttttataaaaattttattttggttaaaattttatgtataaatgtttgtgacttt 51747655  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000005; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 374 - 461
Target Start/End: Original strand, 28727814 - 28727901
Alignment:
Q  374 tttgattttgatcaaaattataggtgtaaatgtttgtgactttcaatttataatgaatcatgtttatctttttcgatgacaccaacaa 461  Q
    |||||||||| ||||||||||| || || |||||| |||||||||| || |||  ||||||| |||| |||||  |||||||||||||    
T  28727814 tttgattttggtcaaaattatatgtatagatgtttttgactttcaaattgtaacaaatcatgcttatattttttaatgacaccaacaa 28727901  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 342 - 419
Target Start/End: Complemental strand, 25537176 - 25537100
Alignment:
Q  342 tgtaaatcataaacaatattttttcatcaaaatttgattttgatcaaaattataggtgtaaatgtttgtgactttcaa 419  Q
    ||||||| || ||||||||||| | || |||||||||||||||| ||||||||| ||  |||| ||||||||||||||    
T  25537176 tgtaaattatgaacaatattttat-ataaaaatttgattttgattaaaattataagtacaaatatttgtgactttcaa 25537100  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 374 - 426
Target Start/End: Complemental strand, 32008203 - 32008151
Alignment:
Q  374 tttgattttgatcaaaattataggtgtaaatgtttgtgactttcaatttataa 426  Q
    |||||||||||| ||||||||| || ||||| |||||||||||||| ||||||    
T  32008203 tttgattttgattaaaattatatgtataaatttttgtgactttcaaattataa 32008151  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 379 - 416
Target Start/End: Original strand, 964261 - 964298
Alignment:
Q  379 ttttgatcaaaattataggtgtaaatgtttgtgacttt 416  Q
    ||||||| |||||||||||| |||||||||||||||||    
T  964261 ttttgattaaaattataggtataaatgtttgtgacttt 964298  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 400 - 465
Target Start/End: Original strand, 4119057 - 4119122
Alignment:
Q  400 taaatgtttgtgactttcaatttataatgaatcatgtttatctttttcgatgacaccaacaacata 465  Q
    |||||||||||||||||||| ||||||  || ||| | |||||||||| || ||||||||||||||    
T  4119057 taaatgtttgtgactttcaaattataacaaaccatatgtatctttttcaataacaccaacaacata 4119122  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000008; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 376 - 453
Target Start/End: Complemental strand, 11064703 - 11064626
Alignment:
Q  376 tgattttgatcaaaattataggtgtaaatgtttgtgactttcaatttataatgaatcatgtttatctttttcgatgac 453  Q
    ||||||| |||||||||||||||||| | |||||| |||||||| || |||| ||||||  ||||||| ||| |||||    
T  11064703 tgatttttatcaaaattataggtgtataagtttgtaactttcaaattgtaataaatcattcttatcttcttcaatgac 11064626  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 361 - 426
Target Start/End: Complemental strand, 40368201 - 40368136
Alignment:
Q  361 tttttcatcaaaatttgattttgatcaaaattataggtgtaaatgtttgtgactttcaatttataa 426  Q
    ||||| || ||| |||||||||||| |||| ||||||| || ||||||||||||||||| ||||||    
T  40368201 ttttttatgaaattttgattttgattaaaagtataggtatagatgtttgtgactttcaaattataa 40368136  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 342 - 416
Target Start/End: Original strand, 18887291 - 18887364
Alignment:
Q  342 tgtaaatcataaacaatattttttcatcaaaatttgattttgatcaaaattataggtgtaaatgtttgtgacttt 416  Q
    |||||||  |||||||| |||||| || ||| |||||||||||| ||||||||| || || ||||||||||||||    
T  18887291 tgtaaattttaaacaatttttttt-atgaaattttgattttgattaaaattatatgtatagatgtttgtgacttt 18887364  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000005; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 374 - 440
Target Start/End: Original strand, 29687007 - 29687073
Alignment:
Q  374 tttgattttgatcaaaattataggtgtaaatgtttgtgactttcaatttataatgaatcatgtttat 440  Q
    |||||||||| |||| ||||  ||| || |||||||||||||| || ||||||| ||||||||||||    
T  29687007 tttgattttgttcaatattaagggtatatatgtttgtgacttttaaattataataaatcatgtttat 29687073  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 424 - 461
Target Start/End: Original strand, 30333872 - 30333909
Alignment:
Q  424 taatgaatcatgtttatctttttcgatgacaccaacaa 461  Q
    |||| ||||||||||||||||||| |||||||||||||    
T  30333872 taataaatcatgtttatctttttcaatgacaccaacaa 30333909  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 244 - 313
Target Start/End: Complemental strand, 54605495 - 54605426
Alignment:
Q  244 tttttctccacctaagtctaacataatgctaaacaggcacgctaaatctgaaggtaaaacatactctcac 313  Q
    |||||| |||| ||||||||||||||| ||||     |||||||||| ||||||||||||| ||||||||    
T  54605495 tttttccccacataagtctaacataatactaagagtacacgctaaatttgaaggtaaaacaaactctcac 54605426  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 344 - 416
Target Start/End: Original strand, 35258769 - 35258841
Alignment:
Q  344 taaatcataaacaatattttttcatcaaaatttgattttgatcaaaattataggtgtaaatgtttgtgacttt 416  Q
    ||||| ||||| ||| |||||| || ||| ||||||||| || ||||||||| || || ||||||||||||||    
T  35258769 taaattataaataatttttttttatgaaattttgatttttattaaaattatatgtatagatgtttgtgacttt 35258841  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 429 - 461
Target Start/End: Complemental strand, 8145233 - 8145201
Alignment:
Q  429 aatcatgtttatctttttcgatgacaccaacaa 461  Q
    ||||||||||||||||||| |||||||||||||    
T  8145233 aatcatgtttatctttttcaatgacaccaacaa 8145201  T

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