View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19239_low_11 (Length: 503)
Name: NF19239_low_11
Description: NF19239
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19239_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 340; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 17 - 476
Target Start/End: Original strand, 4621354 - 4621812
Alignment:
| Q |
17 |
aattcataggaattgtggcagctgctatgctcctggtactcaccatcatgcagacatattactcatcccgcagtgactaacttgcttcatgtaactaaat |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
4621354 |
aattcataggaattgtggcagctgctatgctcctggtactcaccatcatgcagacatattactcatcccgcagtgactaacttgcttcatgtaactatat |
4621453 |
T |
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| Q |
117 |
gaatcaaaaatcttgatttagttacaaaaataatgttttcaaacaatttcaaatgaataaaagaatagaagcatattgtgtatgcgcactcttgtattga |
216 |
Q |
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| T |
4621454 |
gaatcaaaaatcttgatttagttaccaaaataatgttttcaaacaatttcaaatgaataaaagaatagaagcatattgcgtatgcgtactcttgtattga |
4621553 |
T |
|
| Q |
217 |
tttttattttgatttctattgtatgcacgggaaattaagaaattctaaccggtaaacnnnnnnnnnnnngggtaaatcaatattttttattgcttaatgt |
316 |
Q |
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||||||||||| ||| ||||||||||||||||||||||||||||| |||| |||||| |||||||||||||||||| |||||||||||| |
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| T |
4621554 |
tttttattttggtttatattgtatgcacgggaaattaagaaattccaaccagtaaacttatatttttttgggtaaatcaatatttttgattgcttaatgt |
4621653 |
T |
|
| Q |
317 |
gtaaggtcaaccaacacatctccaagtgtcatttctgtatgtttaaagcataagtacaacaaacacatctccagtgannnnnnnnctttctaattcgatg |
416 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||| || |||||||||| |||| |
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| T |
4621654 |
gtaaggtcaaccaacacatctccaagtgtcatttctgtatgtttatagcataagtacaacaaacaca-ctccagagattttttttctttctaattggatg |
4621752 |
T |
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| Q |
417 |
ataattactaattagtcctcgttcttacattgaatatagtttgtacactatccttgaatg |
476 |
Q |
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| T |
4621753 |
ataattactaattagtcctcgttcttacattgaatatagtttgtacactatcctggaatg |
4621812 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 17 - 96
Target Start/End: Original strand, 4591822 - 4591901
Alignment:
| Q |
17 |
aattcataggaattgtggcagctgctatgctcctggtactcaccatcatgcagacatattactcatcccgcagtgactaa |
96 |
Q |
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|||||||||||||||| ||||||||| ||||| |||| |||||||| |||| |||||||||||||||||||||| |||| |
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| T |
4591822 |
aattcataggaattgtcgcagctgctttgctcgtggttctcaccatagtgcaaacatattactcatcccgcagtggctaa |
4591901 |
T |
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