View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19239_low_12 (Length: 488)
Name: NF19239_low_12
Description: NF19239
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19239_low_12 |
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Alignment Details
Target: chr6 (Bit Score: 360; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 108 - 471
Target Start/End: Original strand, 32321589 - 32321952
Alignment:
| Q |
108 |
tttgagtactcacagagagcatgaggccaatatccatgcttaaaaaggccacacccaagaatgcactcatgcagataataaaatcaaacttatcaacttt |
207 |
Q |
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| T |
32321589 |
tttgagtactcacagagagcatgaggccaatatccatgcttaaaaaggccacacccaagaatgcactcatgcagataataaaatcaaacttatcaacttt |
32321688 |
T |
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| Q |
208 |
aaagagatgaatagcttctgtatagtttatcaaccctaacatggctgatacaatgatagctgatagagcaacaagtggtgtgttgctaaataatggtgcc |
307 |
Q |
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| T |
32321689 |
aaagagatgaatagcttctgtatagtttatcaaccctaacatggctgatacaatgatagctgatagagcaacaagtggtgtgttgctaaataatggtgcc |
32321788 |
T |
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| Q |
308 |
aaaaattgtagtgttagagccattattactgcttgaaccacatttgtcattgcagatttacatcctgcattgtaattcacagccgtcttggaaaatggtc |
407 |
Q |
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| T |
32321789 |
aaaaattgtagtgttagagccattattactgcttgaaccacatttgtcattgcagatttacatcctgcattgtaattcacagccgtcttggaaaatggtc |
32321888 |
T |
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| Q |
408 |
ctacaaaaatcaatttaagagtaaatatatcagcataaaataatgaacatttttatgtcaaaag |
471 |
Q |
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| T |
32321889 |
ctacaaaaatcaatttaagagtaaatatatcagcataaaataacgaacatttttatgtcaaaag |
32321952 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 32321484 - 32321543
Alignment:
| Q |
1 |
cgatttcttttcctttctctaatattttgtcattaattcaactctttttagggttaaggg |
60 |
Q |
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| T |
32321484 |
cgatttctttttctttctctaatattttgtcattaattcaactctttttagggttaaggg |
32321543 |
T |
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