View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19239_low_14 (Length: 467)
Name: NF19239_low_14
Description: NF19239
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19239_low_14 |
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| [»] scaffold0252 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 337; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 21 - 458
Target Start/End: Complemental strand, 9197807 - 9197372
Alignment:
| Q |
21 |
atcttcattttcatgtgcagcaaccaattttcctatgcacaagaaacaagacacaacacaacacaatacatgtacagcagccaattatatatgcagcaac |
120 |
Q |
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| T |
9197807 |
atcttcattttcatgtgcagcaaccaattttcctatgcacaagaaacaagacacaacacaacataatacatgtacagcagccaattatatatgcagcaac |
9197708 |
T |
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| Q |
121 |
aaccaatcgatagttttatcatatttttgtttttggagtaaaccattaagttggtcccnnnnnnnnaaatcattctcaaattaattctcgattctgttaa |
220 |
Q |
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| T |
9197707 |
aaccaatcgatagttttatcatatttttgtttttggagtaaactattaagttggtcccttttttttaaatcattctcaaattaattctcgattctgctaa |
9197608 |
T |
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| Q |
221 |
tatttcaaactaaccaacaattaacttttatcgaactcttcaaacttttgtttacnnnnnnnnnnnnatatgctaatttgtcagctatatatcaagtaca |
320 |
Q |
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| T |
9197607 |
tatttgaaactaatcaacaattaacttttatcgaacacttcaaacttttgtttactttttttttt--atatgctaatttgtccgctatatattaagtaca |
9197510 |
T |
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| Q |
321 |
gtatcatttcacttattcacaacttgcttcaagttttaactagctgttttttaggtgaagttttaactaacttttctattatacattactttttactaaa |
420 |
Q |
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| T |
9197509 |
gtatcatttcacttattcacaacttgcttcaagttttaactagctgttttttaggtgaagttttaactaacttttctattatacattactttttactaaa |
9197410 |
T |
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| Q |
421 |
catagcattacgcatttggtgggattaaatagaataat |
458 |
Q |
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| T |
9197409 |
catagcattacacatttggtgggattaaatagaataat |
9197372 |
T |
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Target: scaffold0252 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0252
Description:
Target: scaffold0252; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 190 - 227
Target Start/End: Complemental strand, 19957 - 19920
Alignment:
| Q |
190 |
tcattctcaaattaattctcgattctgttaatatttca |
227 |
Q |
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| T |
19957 |
tcattctcaaattaattcccgattctattaatatttca |
19920 |
T |
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