View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19239_low_15 (Length: 452)
Name: NF19239_low_15
Description: NF19239
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19239_low_15 |
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Alignment Details
Target: chr2 (Bit Score: 255; Significance: 1e-142; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 20 - 406
Target Start/End: Complemental strand, 44467726 - 44467332
Alignment:
| Q |
20 |
atactgatttcatcttttgtagataaaggagatttgcagcttgttgttatggtcaccttgtaatcgcagttaccactccgtttagtctcattctgaaaca |
119 |
Q |
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| T |
44467726 |
atactgatttcatcttttgtagataaaggagatttgcagcttgttgctatggtcaccttgtaatcgcagttaccactccgtttagtctcattctgaaaca |
44467627 |
T |
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| Q |
120 |
tgcatgcatatataaccttttatttaa--------------aatatgaaattaataataaatcattcatgcagtgactaaactaattaattaacagggaa |
205 |
Q |
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| T |
44467626 |
tgcat----atataaccttttatttaagatgcattaattaaaatatgaaattaataataaatcattcatccagtgactaaact-------ttacagggaa |
44467538 |
T |
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| Q |
206 |
aagggacattgaaaatctaaagatttacttgttgttgggtatgaataagcatggatgattggttcatttgaggttgagtgcgaatgatcaatgttggtgt |
305 |
Q |
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| T |
44467537 |
aagggacattgaaaatt----gatttacttgttgttgggtatgaataagcatggatgattggttcatttgaggttgagtgcgaatgatcaatgttggtgt |
44467442 |
T |
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| Q |
306 |
tgcatgtgtgaaggcaacgatgat---------gatggagaatgtgaagattaaggttagaagagttttcatgtttttgtgcttcaagagaatagaatga |
396 |
Q |
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| T |
44467441 |
tgcatgtgtgaaggcaacgatgatgatgatgatgatggagaatgtgaagattaaggttagaagagttttcatgtttttgtgcttcaagagaatagaatga |
44467342 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 232 - 353
Target Start/End: Complemental strand, 44474575 - 44474457
Alignment:
| Q |
232 |
acttgttgttgggtatgaataagcatggatgattggttcatttgaggttgagtgcgaatgatcaatgttggtgttgcatgtgtgaaggcaacgatgatga |
331 |
Q |
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| T |
44474575 |
acttgttgttgggtatggttaagcatggaatattggttcatttgaagttgagagcgagagaccaatgatggtgttgcatttgtgaaggcagcaacgatga |
44474476 |
T |
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| Q |
332 |
tggagaatgtgaagattaaggt |
353 |
Q |
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| T |
44474475 |
---agaatgtgaagattaaggt |
44474457 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 294 - 368
Target Start/End: Complemental strand, 44488851 - 44488783
Alignment:
| Q |
294 |
caatgttggtgttgcatgtgtgaaggcaacgatgatgatggagaatgtgaagattaaggttagaagagttttcat |
368 |
Q |
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| T |
44488851 |
caatgttggtgctgcatgtgagaaggcaacaatgatg---gagaatgtgaagattaaggt---aagagttttcat |
44488783 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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