View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19239_low_16 (Length: 440)

Name: NF19239_low_16
Description: NF19239
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19239_low_16
NF19239_low_16
[»] chr4 (6 HSPs)
chr4 (152-423)||(55203229-55203500)
chr4 (12-151)||(55203569-55203708)
chr4 (203-274)||(55205844-55205915)
chr4 (250-306)||(10032286-10032342)
chr4 (256-306)||(1856676-1856726)
chr4 (78-130)||(15995475-15995527)
[»] chr2 (3 HSPs)
chr2 (24-146)||(10257972-10258096)
chr2 (64-151)||(33669249-33669338)
chr2 (250-306)||(18259213-18259270)
[»] chr1 (7 HSPs)
chr1 (44-122)||(48990561-48990641)
chr1 (44-141)||(19874187-19874285)
chr1 (44-112)||(25491655-25491725)
chr1 (253-302)||(48990904-48990953)
chr1 (253-298)||(25491998-25492043)
chr1 (253-302)||(48986045-48986094)
chr1 (253-306)||(52433030-52433083)
[»] chr7 (5 HSPs)
chr7 (44-112)||(46168977-46169047)
chr7 (253-302)||(46164460-46164509)
chr7 (204-277)||(46513512-46513583)
chr7 (253-302)||(46169318-46169367)
chr7 (368-420)||(46466492-46466544)
[»] chr3 (2 HSPs)
chr3 (248-283)||(34374786-34374821)
chr3 (248-306)||(34374007-34374065)
[»] scaffold0060 (1 HSPs)
scaffold0060 (253-306)||(11167-11221)
[»] chr6 (1 HSPs)
chr6 (250-306)||(6356377-6356433)


Alignment Details
Target: chr4 (Bit Score: 223; Significance: 1e-122; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 152 - 423
Target Start/End: Complemental strand, 55203500 - 55203229
Alignment:
Q  152 ggcggcgccggcaggaggcatggcgatgagtgagatacgcttgagaaagaggaagcgcgtgtttctcctctattttgttttttaattnnnnnnngctgat 251  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||    
T  55203500 ggcggcgccggcaggaggcatggcgatgagtgagatacgcttgagaaagaggaagcgcgtgtttctcctctattttgttttttaattaaaaaa-gctgat 55203402  T
Q  252 gttttgtttatttttaatctgaaccattgaatccctttcttccacatgtcattcaataaacgaat-cacacggtcgccttctccctgaaataatcctatt 350  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||    
T  55203401 gttttgtttatttttaatctgaaccattgaatccctttcttccacatgtcattcaataaacgaattcacacggtcgccttctccctgaaatgatcctatt 55203302  T
Q  351 ctgtgaaggtctccgtcgcaatcttcaatcccctaacgaattcatgcccagtgtaactctccgttttcttagc 423  Q
    |||||||||||||||||||||| |||||||||||||||||||||||| | |||||||||||||||||||||||    
T  55203301 ctgtgaaggtctccgtcgcaatattcaatcccctaacgaattcatgcgcggtgtaactctccgttttcttagc 55203229  T

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Target: chr4; HSP #2
Raw Score: 136; E-Value: 9e-71
Query Start/End: Original strand, 12 - 151
Target Start/End: Complemental strand, 55203708 - 55203569
Alignment:
Q  12 agagacataattatattttacagtcttgtagttgttgtcatgagtatttagaaattggcaagggtaaaagtgggtaaatgaatcgtctggtgtggaagag 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55203708 agagacataattatattttacagtcttgtagttgttgtcatgagtatttagaaattggcaagggtaaaagtgggtaaatgaatcgtctggtgtggaagag 55203609  T
Q  112 aggagaaacaatggtggtttggtacgtgagagcggcagtg 151  Q
    | ||||||||||||||||||||||||||||||||||||||    
T  55203608 aagagaaacaatggtggtttggtacgtgagagcggcagtg 55203569  T

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Target: chr4; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 203 - 274
Target Start/End: Original strand, 55205844 - 55205915
Alignment:
Q  203 gaagcgcgtgtttctcctctattttgttttttaattnnnnnnngctgatgttttgtttatttttaatctgaa 274  Q
    ||||||||||||||||||||||||||||||||||||        ||||||||||||||||||||||||||||    
T  55205844 gaagcgcgtgtttctcctctattttgttttttaattaaaaaaaactgatgttttgtttatttttaatctgaa 55205915  T

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Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 250 - 306
Target Start/End: Original strand, 10032286 - 10032342
Alignment:
Q  250 atgttttgtttatttttaatctgaaccattgaatccctttcttccacatgtcattca 306  Q
    ||||||||||||||||||||||||| |||||||||| ||| |  |||||||||||||    
T  10032286 atgttttgtttatttttaatctgaatcattgaatccttttttgtcacatgtcattca 10032342  T

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Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 256 - 306
Target Start/End: Original strand, 1856676 - 1856726
Alignment:
Q  256 tgtttatttttaatctgaaccattgaatccctttcttccacatgtcattca 306  Q
    |||||||||| ||||||||||||||||||| ||| | ||||||||||||||    
T  1856676 tgtttattttaaatctgaaccattgaatccttttttgccacatgtcattca 1856726  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 78 - 130
Target Start/End: Original strand, 15995475 - 15995527
Alignment:
Q  78 aaagtgggtaaatgaatcgtctggtgtggaagagaggagaaacaatggtggtt 130  Q
    ||||||||||||||||  | ||||||||||||||| ||||| ||| |||||||    
T  15995475 aaagtgggtaaatgaaaagactggtgtggaagagaagagaagcaacggtggtt 15995527  T

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Target: chr2 (Bit Score: 62; Significance: 1e-26; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 24 - 146
Target Start/End: Complemental strand, 10258096 - 10257972
Alignment:
Q  24 atattttacagtcttgtagttgttgtcatgagtatttagaaattggcaagggtaaaagtgggta--aatgaatcgtctggtgtggaagagaggagaaaca 121  Q
    ||||||| |||||||||||||||||| |||| || |||||||||||||||||||||||||||||  |||||||||  |||| ||||||||| ||| | ||    
T  10258096 atattttgcagtcttgtagttgttgttatgaatacttagaaattggcaagggtaaaagtgggtaagaatgaatcgattggtttggaagagaagagcagca 10257997  T
Q  122 atggtggtttggtacgtgagagcgg 146  Q
    | |||||||||||| ||||| ||||    
T  10257996 aaggtggtttggtatgtgagggcgg 10257972  T

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Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 64 - 151
Target Start/End: Original strand, 33669249 - 33669338
Alignment:
Q  64 aattggcaagggtaaaagtgggtaa--atgaatcgtctggtgtggaagagaggagaaacaatggtggtttggtacgtgagagcggcagtg 151  Q
    |||||| ||||||||||||||||||  |||||||| | ||||||||||||| ||| |||||| | ||||||||| ||||| || ||||||    
T  33669249 aattggtaagggtaaaagtgggtaagaatgaatcgaccggtgtggaagagaagagcaacaatagcggtttggtatgtgagggcagcagtg 33669338  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 250 - 306
Target Start/End: Original strand, 18259213 - 18259270
Alignment:
Q  250 atgttttgtttatttttaa-tctgaaccattgaatccctttcttccacatgtcattca 306  Q
    ||||||||||||||||||| | ||||||||||||||  ||| | ||||||||||||||    
T  18259213 atgttttgtttatttttaaatatgaaccattgaatctttttttgccacatgtcattca 18259270  T

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Target: chr1 (Bit Score: 46; Significance: 4e-17; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 44 - 122
Target Start/End: Original strand, 48990561 - 48990641
Alignment:
Q  44 tgttgtcatgagtatttagaaattggcaagggtaaaagtgggta--aatgaatcgtctggtgtggaagagaggagaaacaa 122  Q
    ||||||||||| |||||||||||||||||||||||| |||||||  | ||||||| ||||||||||||||| ||| |||||    
T  48990561 tgttgtcatgaatatttagaaattggcaagggtaaatgtgggtaagagtgaatcgactggtgtggaagagaagagcaacaa 48990641  T

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Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 44 - 141
Target Start/End: Original strand, 19874187 - 19874285
Alignment:
Q  44 tgttgtcatgagtatttagaaattggcaagggtaaaagtgggta--aatgaatcgtctggtgtggaagagaggagaaacaatggtggtttggtacgtgag 141  Q
    ||||||||||| |||||||||||||||||| |||||||||||||  | ||||||  |||||||||||||||  || ||||| |||||||| ||| |||||    
T  19874187 tgttgtcatgaatatttagaaattggcaagcgtaaaagtgggtaagagtgaatcaactggtgtggaagagaatagcaacaa-ggtggtttagtatgtgag 19874285  T

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Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 44 - 112
Target Start/End: Original strand, 25491655 - 25491725
Alignment:
Q  44 tgttgtcatgagtatttagaaattggcaagggtaaaagtgggta--aatgaatcgtctggtgtggaagaga 112  Q
    ||||||||||| ||||||||||||| |||||||||| |||||||  | ||||||| |||||||||||||||    
T  25491655 tgttgtcatgaatatttagaaattgacaagggtaaatgtgggtaagagtgaatcgactggtgtggaagaga 25491725  T

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Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 253 - 302
Target Start/End: Original strand, 48990904 - 48990953
Alignment:
Q  253 ttttgtttatttttaatctgaaccattgaatccctttcttccacatgtca 302  Q
    ||||||||||||||||||||||||||||||||| ||| | ||||||||||    
T  48990904 ttttgtttatttttaatctgaaccattgaatccatttttgccacatgtca 48990953  T

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Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 253 - 298
Target Start/End: Original strand, 25491998 - 25492043
Alignment:
Q  253 ttttgtttatttttaatctgaaccattgaatccctttcttccacat 298  Q
    ||||||||||||||||||||||||||||||||| ||| | ||||||    
T  25491998 ttttgtttatttttaatctgaaccattgaatccatttttgccacat 25492043  T

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Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 253 - 302
Target Start/End: Complemental strand, 48986094 - 48986045
Alignment:
Q  253 ttttgtttatttttaatctgaaccattgaatccctttcttccacatgtca 302  Q
    |||||||||||||||||||||| |||||||||| ||| | ||||||||||    
T  48986094 ttttgtttatttttaatctgaatcattgaatccatttttgccacatgtca 48986045  T

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Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 253 - 306
Target Start/End: Complemental strand, 52433083 - 52433030
Alignment:
Q  253 ttttgtttatttttaatctgaaccattgaatccctttcttccacatgtcattca 306  Q
    ||||||||||||||||||||||||||||||| | ||| | |||| |||||||||    
T  52433083 ttttgtttatttttaatctgaaccattgaattcatttgtgccacgtgtcattca 52433030  T

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Target: chr7 (Bit Score: 44; Significance: 7e-16; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 44 - 112
Target Start/End: Original strand, 46168977 - 46169047
Alignment:
Q  44 tgttgtcatgagtatttagaaattggcaagggtaaaagtgggta--aatgaatcgtctggtgtggaagaga 112  Q
    ||||||||||| |||||||||||||||||||||||| |||||||  | ||||||| |||||||||||||||    
T  46168977 tgttgtcatgaatatttagaaattggcaagggtaaatgtgggtaagagtgaatcgactggtgtggaagaga 46169047  T

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Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 253 - 302
Target Start/End: Complemental strand, 46164509 - 46164460
Alignment:
Q  253 ttttgtttatttttaatctgaaccattgaatccctttcttccacatgtca 302  Q
    ||||||||||||||||||||||||||||||||| ||| | ||||||||||    
T  46164509 ttttgtttatttttaatctgaaccattgaatccatttttgccacatgtca 46164460  T

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Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 204 - 277
Target Start/End: Original strand, 46513512 - 46513583
Alignment:
Q  204 aagcgcgtgtttctcctctattttgttttttaattnnnnnnngctgatgttttgtttatttttaatctgaacca 277  Q
    ||||||||||| |||||||||||| ||||||||||       ||||||||||||||||||||||||||||||||    
T  46513512 aagcgcgtgtt-ctcctctatttttttttttaattaaaaaa-gctgatgttttgtttatttttaatctgaacca 46513583  T

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Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 253 - 302
Target Start/End: Original strand, 46169318 - 46169367
Alignment:
Q  253 ttttgtttatttttaatctgaaccattgaatccctttcttccacatgtca 302  Q
    |||||||||||||||||||||| |||||||||| ||| | ||||||||||    
T  46169318 ttttgtttatttttaatctgaatcattgaatccatttttgccacatgtca 46169367  T

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Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 368 - 420
Target Start/End: Original strand, 46466492 - 46466544
Alignment:
Q  368 gcaatcttcaatcccctaacgaattcatgcccagtgtaactctccgttttctt 420  Q
    |||||||||||| ||||||||||||||| | |||||| ||||| |||||||||    
T  46466492 gcaatcttcaatgccctaacgaattcattcgcagtgttactcttcgttttctt 46466544  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 248 - 283
Target Start/End: Original strand, 34374786 - 34374821
Alignment:
Q  248 tgatgttttgtttatttttaatctgaaccattgaat 283  Q
    ||||||||||||||||||||||||||||||||||||    
T  34374786 tgatgttttgtttatttttaatctgaaccattgaat 34374821  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 248 - 306
Target Start/End: Complemental strand, 34374065 - 34374007
Alignment:
Q  248 tgatgttttgtttatttttaatctgaaccattgaatccctttcttccacatgtcattca 306  Q
    ||||||||| |||||||||||||| ||||||||||||  ||| | ||||||||||||||    
T  34374065 tgatgttttatttatttttaatctaaaccattgaatcattttttgccacatgtcattca 34374007  T

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Target: scaffold0060 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 253 - 306
Target Start/End: Complemental strand, 11221 - 11167
Alignment:
Q  253 ttttgtttatttttaatctgaaccattgaatccctttctt-ccacatgtcattca 306  Q
    ||||| ||||||||||||||||||||||||||| ||| || ||||||||||||||    
T  11221 ttttgattatttttaatctgaaccattgaatcctttttttaccacatgtcattca 11167  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 250 - 306
Target Start/End: Original strand, 6356377 - 6356433
Alignment:
Q  250 atgttttgtttatttttaatctgaaccattgaatccctttcttccacatgtcattca 306  Q
    |||||||| ||||||| ||||||||| ||||||||  ||| | ||||||||||||||    
T  6356377 atgttttgattattttaaatctgaacaattgaatcgatttttaccacatgtcattca 6356433  T

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