View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19239_low_2 (Length: 746)
Name: NF19239_low_2
Description: NF19239
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19239_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 180; Significance: 8e-97; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 180; E-Value: 8e-97
Query Start/End: Original strand, 17 - 289
Target Start/End: Complemental strand, 27499535 - 27499263
Alignment:
| Q |
17 |
acttaaaatgttcagatatataataacatgccctaatatagcatggacattatattgtggctaagtaaccaatctcaatgaagaaaatcggaatgcctat |
116 |
Q |
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||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
27499535 |
acttaaaatgttcagatatttaataacatgccctaatagagcatggacattatattgtggctaagtaaccaatctcaatgaagaaaatgggaatgcctat |
27499436 |
T |
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| Q |
117 |
tannnnnnnnnnnnnnnnnnngattctaagttctaatgcttttagtagggtggatgaagaggcacaaatggaaggccaagatcatgtacataaacctatc |
216 |
Q |
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|| ||||||||||||||||||| ||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||| |
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| T |
27499435 |
tatttttttattccttcttttgattctaagttctaatgctgttagtagggtggatgaagaggcacaaaaggaaggacaagatcatgtacataaacctatc |
27499336 |
T |
|
| Q |
217 |
acaaattatgggtatgatcatgcatgcaccctctagctgttatatattactatatactagcaaaccaatatac |
289 |
Q |
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| T |
27499335 |
acaaattatgggtatgatcatgcatgcaccctctagctgttctatattactatttactagccaaccaatatac |
27499263 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 171; E-Value: 2e-91
Query Start/End: Original strand, 548 - 738
Target Start/End: Complemental strand, 27498946 - 27498757
Alignment:
| Q |
548 |
atgatatgtttgttcttttaaccttgaaaattgaattaaatattggttttttgtaatggtgttaaggagtgaaacaatgtgggacatggaagaggatgaa |
647 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||| |
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| T |
27498946 |
atgatatgtttgttcttttaaccttgaaaattgaattaaatattggttttttgtaatggtgtta-gaagtgaaacaatgtgggacatggaagaggatgaa |
27498848 |
T |
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| Q |
648 |
tggcaaatggtagggaagaaaggaaaccaatttttggtgaatggtcagcctttctatataaatggattcaacacatactggttgatgatgt |
738 |
Q |
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| T |
27498847 |
tggcaaatggtagggaagaaaggaaaccaatttgtggtgaatggtcagcctttctatataaatggattcaacacatactggttaatgatgt |
27498757 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 159; E-Value: 3e-84
Query Start/End: Original strand, 17 - 283
Target Start/End: Complemental strand, 27520689 - 27520420
Alignment:
| Q |
17 |
acttaaaatgttcagatatataataacatgccctaatatagcatggacattatattgtggctaagtaaccaatctcaatgaagaaaa---tcggaatgcc |
113 |
Q |
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|||||| ||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||| ||||||||||||| | ||||| |
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| T |
27520689 |
acttaagatgttcagatatataataacatgccctaatagagcatgaacattatattgtggctaagtaaccaatttcaatgaagaaaataatgggaatatg |
27520590 |
T |
|
| Q |
114 |
tattannnnnnnnnnnnnnnnnnngattctaagttctaatgcttttagtagggtggatgaagaggcacaaatggaaggccaagatcatgtacataaacct |
213 |
Q |
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| T |
27520589 |
tattatttttttattcctttttttgattctaagttctaatgcttttagtagggtggatgaagaggcacaaatggaaggccaagatcatgtacataaacct |
27520490 |
T |
|
| Q |
214 |
atcacaaattatgggtatgatcatgcatgcaccctctagctgttatatattactatatactagcaaacca |
283 |
Q |
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| T |
27520489 |
atcacaaattatgggtatgatcaagcatgcaccctctagctgttatatattactatatactagccaacca |
27520420 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 138; E-Value: 9e-72
Query Start/End: Original strand, 543 - 738
Target Start/End: Complemental strand, 27520380 - 27520192
Alignment:
| Q |
543 |
ggccaatgatatgtttgttcttttaaccttgaaaattgaattaaatattggttttttgtaatggtgttaaggagtgaaacaatgtgggacatggaagagg |
642 |
Q |
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|||||||| |||||||||||||||||||||||||||| |||| | ||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
27520380 |
ggccaatggtatgtttgttcttttaaccttgaaaattaaattga-------ttttttgtaatggtgttaaggagtgcaacaatgtgggacatggaagagg |
27520288 |
T |
|
| Q |
643 |
atgaatggcaaatggtagggaagaaaggaaaccaatttttggtgaatggtcagcctttctatataaatggattcaacacatactggttgatgatgt |
738 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| |||| ||||||||||||| |
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| T |
27520287 |
atgaatggcaaatggtagggaagaaaggaaaccaatttgtggtgaatagtcagcctttctatataaatggattcaacgcatattggttgatgatgt |
27520192 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 428 - 510
Target Start/End: Complemental strand, 27499124 - 27499042
Alignment:
| Q |
428 |
gcagacaaatgtttgtaaattagcaatgatgttaatttctagagtttaaaccttctgaaccttttgtttaaaactatttcggt |
510 |
Q |
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| T |
27499124 |
gcagacaaatgtttgtaaattagcaatgatgttaatttctagagtttaaaccttctgaaccttttgtttaaaactctttcggt |
27499042 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 71; E-Value: 9e-32
Query Start/End: Original strand, 17 - 104
Target Start/End: Complemental strand, 27514327 - 27514238
Alignment:
| Q |
17 |
acttaaaatgttcagatatataataacatgccctaatatagcatggacatt--atattgtggctaagtaaccaatctcaatgaagaaaat |
104 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||| |||||||||||||| |
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| T |
27514327 |
acttaaaatgttcagatatataataacatgccctaatagagcatggacattatatattgtggctaagtaaccaatttcaatgaagaaaat |
27514238 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 138 - 178
Target Start/End: Complemental strand, 27514201 - 27514161
Alignment:
| Q |
138 |
gattctaagttctaatgcttttagtagggtggatgaagagg |
178 |
Q |
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| T |
27514201 |
gattctaagttctaatgcttttagtagggtggatgaagagg |
27514161 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 663 - 734
Target Start/End: Original strand, 281131 - 281202
Alignment:
| Q |
663 |
aagaaaggaaaccaatttttggtgaatggtcagcctttctatataaatggattcaacacatactggttgatg |
734 |
Q |
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|||||||||||||||||| | ||||||| || ||||||||| |||||||||||||||| || ||||||||| |
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| T |
281131 |
aagaaaggaaaccaatttgtagtgaatgaccaacctttctatgtaaatggattcaacacttattggttgatg |
281202 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 663 - 734
Target Start/End: Complemental strand, 634721 - 634650
Alignment:
| Q |
663 |
aagaaaggaaaccaatttttggtgaatggtcagcctttctatataaatggattcaacacatactggttgatg |
734 |
Q |
| |
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|||||||||||||||||| | ||||||| || ||||||||| |||||||||||||||| || ||||||||| |
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| T |
634721 |
aagaaaggaaaccaatttgtagtgaatgaccaacctttctatgtaaatggattcaacacttattggttgatg |
634650 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 663 - 734
Target Start/End: Complemental strand, 820524 - 820453
Alignment:
| Q |
663 |
aagaaaggaaaccaatttttggtgaatggtcagcctttctatataaatggattcaacacatactggttgatg |
734 |
Q |
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|||||||||||||||||| | ||||||| || ||||||||| |||||||||||||||| || ||||||||| |
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| T |
820524 |
aagaaaggaaaccaatttgtagtgaatgaccaacctttctatgtaaatggattcaacacttattggttgatg |
820453 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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