View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19239_low_28 (Length: 308)
Name: NF19239_low_28
Description: NF19239
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19239_low_28 |
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Alignment Details
Target: chr2 (Bit Score: 217; Significance: 1e-119; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 21 - 302
Target Start/End: Complemental strand, 39962617 - 39962333
Alignment:
| Q |
21 |
aggtagattgctgatgctgctgattttggagatgtgttgtgttgcatggaaacttctccttagttcaagaggaaagatggccgtgcttggatttattgcg |
120 |
Q |
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| T |
39962617 |
aggtagattgctgatgctgctgattttggagatgtgttgtgttgcatggaaacttctcctttgttcaagaggaaagatggccgtgcttggatttattgcg |
39962518 |
T |
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| Q |
121 |
gcagatatacctaggtctaatctannnnnnnnnnnnnnattcttataccttaggataacacatttatatcatttgcatcacaatattgcaaaatttaatg |
220 |
Q |
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| T |
39962517 |
gcagatatacctaggtctaatctatttttttggtttttattcttataccttaggataacacatttatataatttgcatcacaatattgcaaaatttaatg |
39962418 |
T |
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| Q |
221 |
taagagtaatttaatttgtttgttgttaatttggaatag---cattaatatgctttgaggacttttcttgtggtatgacgagccc |
302 |
Q |
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| T |
39962417 |
taagagtaatttaatttgtttgttgttaatttggaatagtataattaatatgctttgaggacttttcttgtggtatgacgagccc |
39962333 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 170 - 256
Target Start/End: Original strand, 43617244 - 43617330
Alignment:
| Q |
170 |
ttaggataacacatttatatcatttgcatcacaatattgcaaaatttaatgtaagagtaatttaatttgtttgttgttaatttggaa |
256 |
Q |
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| T |
43617244 |
ttaggataacacatttatatccattgcatcacaatattgcaaaatttattgtatgattgatgttatttgtttgttgttaatttggaa |
43617330 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 170 - 266
Target Start/End: Complemental strand, 41039940 - 41039844
Alignment:
| Q |
170 |
ttaggataacacatttatatcatttgcatcacaatattgcaaaatttaatgtaagagtaatttaatttgtttgttgttaatttggaatagcattaat |
266 |
Q |
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| T |
41039940 |
ttaggataagacgtttacatcatttgcaacacaatattgcaaagtttaatgtatgattgatgttatttgtttgttgttaatttggaattacattaat |
41039844 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 26 - 129
Target Start/End: Complemental strand, 1742386 - 1742280
Alignment:
| Q |
26 |
gattgctgatgctgctgattttggagatgtgttgtgtt--gcatggaaacttctccttagttc-aagaggaaagatggccgtgcttggatttattgcggc |
122 |
Q |
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| T |
1742386 |
gattgttgatgcttctgattttggtgatgtgttgcctttgggatggaagcttcttcttagtttgaagaggaaagatggtcgtgcttggatttattgccgc |
1742287 |
T |
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| Q |
123 |
agatata |
129 |
Q |
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| T |
1742286 |
agatata |
1742280 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 170 - 219
Target Start/End: Complemental strand, 41033297 - 41033248
Alignment:
| Q |
170 |
ttaggataacacatttatatcatttgcatcacaatattgcaaaatttaat |
219 |
Q |
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| T |
41033297 |
ttaggataacacgtttacatcatttgaatcacaatattgcaaaatttaat |
41033248 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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