View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19239_low_37 (Length: 250)
Name: NF19239_low_37
Description: NF19239
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19239_low_37 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 12 - 250
Target Start/End: Complemental strand, 54498762 - 54498528
Alignment:
| Q |
12 |
tattctatagagcaaaataacaatcaatggtttaagattaacataaatccgggcgtctattggtaagttaaaatgttgttacaagtttaatttattatat |
111 |
Q |
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| T |
54498762 |
tattctatagagcaaaataacaatcaatggtttaagattcacataaatccgggcatctattggtaagttaaaatgttgttacacgtttaatttattatat |
54498663 |
T |
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| Q |
112 |
aaaatattaaagtttagaataaatcacactcccttcctttctttcagtaaaagatgtttgaattacattttctttctttacgcgttaaaagattaatatt |
211 |
Q |
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| T |
54498662 |
aaaatattaaagtttagaataaatcaca----cttcctttctttcggtaaaagatgtttgaattacattttctctctttacgcgttaaaagattaatatt |
54498567 |
T |
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| Q |
212 |
cacgcgtaaaaattgtgtagggaaaggattactattccc |
250 |
Q |
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| T |
54498566 |
cacgcgtaaaaattgtgtagggaaacgattactattccc |
54498528 |
T |
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