View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19239_low_40 (Length: 237)
Name: NF19239_low_40
Description: NF19239
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19239_low_40 |
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Alignment Details
Target: chr1 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 219
Target Start/End: Complemental strand, 45074226 - 45074008
Alignment:
| Q |
1 |
cagcatccatgtttcactccatccattattctcaataaaccactcttttcctctctcttcaatcttcattctctctgaattcaagaaagaaaatggcctc |
100 |
Q |
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|||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45074226 |
cagcatccatgtttcactccatccattactctcaataaacctctcttttcctctctcttcaatcttcattctctctgaattcaagaaagaaaatggcctc |
45074127 |
T |
|
| Q |
101 |
tctatcaaacctcaactaacttctccacataaacacacttccagtaacctctctcaactccacaccttcaatttctccattgaccatcacattcggtttt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45074126 |
tctatcaaacctcaactaacttctccacataaacacacttccagtaacctctctcaactccacaccttcaatttctccattgaccatcacattcggtttt |
45074027 |
T |
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| Q |
201 |
ctgagcaaacatgccagaa |
219 |
Q |
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||||||||||||||||||| |
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| T |
45074026 |
ctgagcaaacatgccagaa |
45074008 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 171; Significance: 6e-92; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 1 - 219
Target Start/End: Complemental strand, 8881096 - 8880878
Alignment:
| Q |
1 |
cagcatccatgtttcactccatccattattctcaataaaccactcttttcctctctcttcaatcttcattctctctgaattcaagaaagaaaatggcctc |
100 |
Q |
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|
|||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||| |
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| T |
8881096 |
cagcatccatgtttcactccatccatcattctcaataaacctctcttttcctctctcttcaatctttattctctcttaattcaagaaagaaaatggcctc |
8880997 |
T |
|
| Q |
101 |
tctatcaaacctcaactaacttctccacataaacacacttccagtaacctctctcaactccacaccttcaatttctccattgaccatcacattcggtttt |
200 |
Q |
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||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||| |
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| T |
8880996 |
tctctcaaacctcaaccaacttctccacataaacacacttccagtaacctctctcaactccacaccttcaattactccatcgaccatcacattcggttta |
8880897 |
T |
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| Q |
201 |
ctgagcaaacatgccagaa |
219 |
Q |
| |
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| ||| ||| ||||||||| |
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| T |
8880896 |
cagagtaaaaatgccagaa |
8880878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 52 - 219
Target Start/End: Complemental strand, 8885151 - 8884983
Alignment:
| Q |
52 |
tctctcttcaatcttcattctctctgaattcaag-aaagaaaatggcctctctatcaaacctcaactaacttctccacataaacacacttccagtaacct |
150 |
Q |
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||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||| ||| |||||||||| | |||||| ||||||||||||| |
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| T |
8885151 |
tctctcttcaatcttcattctctctgaattcaactaaaaaaaatggcctctctatcaaacctaaaccaacttctccatacaaacactcttccagtaacct |
8885052 |
T |
|
| Q |
151 |
ctctcaactccacaccttcaatttctccattgaccatcacattcggttttctgagcaaacatgccagaa |
219 |
Q |
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|||||||||||||||||||||||||||| | |||||||||| |||||||||||| |||||||| ||||| |
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| T |
8885051 |
ctctcaactccacaccttcaatttctccgtcgaccatcacagtcggttttctgaacaaacatgtcagaa |
8884983 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 109; Significance: 6e-55; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 46 - 214
Target Start/End: Complemental strand, 4341869 - 4341702
Alignment:
| Q |
46 |
ttttcctctctcttcaatcttcattctctctgaattcaagaaagaaaatggcctctctatcaaacctcaactaacttctccacataaacacacttccagt |
145 |
Q |
| |
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||||||||||||||||| ||||||||||| | ||||||| |||||||||||||||||| |||||||||||| |||||||||||| |||||| |||||||| |
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| T |
4341869 |
ttttcctctctcttcaa-cttcattctcttttaattcaacaaagaaaatggcctctctctcaaacctcaaccaacttctccacacaaacacccttccagt |
4341771 |
T |
|
| Q |
146 |
aacctctctcaactccacaccttcaatttctccattgaccatcacattcggttttctgagcaaacatgc |
214 |
Q |
| |
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||||||||||||||||||| |||||||||||||| |||||||| | ||| |||||||||||||||||| |
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| T |
4341770 |
aacctctctcaactccacaacttcaatttctccaccgaccatcagagtcgattttctgagcaaacatgc |
4341702 |
T |
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