View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19239_low_43 (Length: 222)
Name: NF19239_low_43
Description: NF19239
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19239_low_43 |
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Alignment Details
Target: chr3 (Bit Score: 143; Significance: 3e-75; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 17 - 199
Target Start/End: Original strand, 22911636 - 22911818
Alignment:
| Q |
17 |
agcagagaataaatgattatttgcgctatacgcgccttgtttgagccaagtgactagagaatgccccaagtagaagttaatattgtcaaatccaagagca |
116 |
Q |
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|||||||||||||||||||| ||||||| ||||||||||| ||||||||||||| ||||||| |||||| |||||||||||||||||||||||||||||| |
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| T |
22911636 |
agcagagaataaatgattatatgcgctaaacgcgccttgtctgagccaagtgaccagagaattccccaactagaagttaatattgtcaaatccaagagca |
22911735 |
T |
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| Q |
117 |
agctaaagatgcttaacaaacggacagtctcgaagaccgtgcaagatattttcactactattgaggcacctcgggcagttatt |
199 |
Q |
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||| ||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||| |||||||||||||||||||| |
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| T |
22911736 |
agccaaagatgcttaacaaacggacagtctcgaagacagtgcaagatactttcactactattaaggcacctcgggcagttatt |
22911818 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 17 - 138
Target Start/End: Original strand, 13995564 - 13995685
Alignment:
| Q |
17 |
agcagagaataaatgattatttgcgctatacgcgccttgtttgagccaagtgactagagaatgccccaagtagaagttaatattgtcaaatccaagagca |
116 |
Q |
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|||||| ||||||||||||||||||||| | | ||||||||||||||| |||| ||||| | ||| ||||||||||||||||||||||| |||||| |
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| T |
13995564 |
agcagataataaatgattatttgcgctaaaggtgccttgtttgagccagatgaccgtagaattctacaaatagaagttaatattgtcaaatccgagagca |
13995663 |
T |
|
| Q |
117 |
agctaaagatgcttaacaaacg |
138 |
Q |
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||| ||||||||||||| |||| |
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| T |
13995664 |
agccaaagatgcttaacgaacg |
13995685 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 22 - 188
Target Start/End: Complemental strand, 3155033 - 3154867
Alignment:
| Q |
22 |
agaataaatgattatttgcgctatacgcgccttgtttgagccaagtgactagagaatgccccaagtagaagttaatattgtcaaatccaagagcaagcta |
121 |
Q |
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|||||||||||||||||| |||| || |||| ||| ||||| | ||||| | ||||| | |||| |||||||||||||||||||||| || ||| || |
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| T |
3155033 |
agaataaatgattatttgtgctaaactcgccctgtctgagctaggtgaccatagaattcaccaaatagaagttaatattgtcaaatctgagtgcatgcct |
3154934 |
T |
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| Q |
122 |
aagatgcttaacaaacggacagtctcgaagaccgtgcaagatattttcactactattgaggcacctc |
188 |
Q |
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|| || ||||||||||| ||| || | || || ||||| |||| |||||| |||||||||||||||| |
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| T |
3154933 |
aaaattcttaacaaacgaacaatcccaaaaacggtgcatgatactttcaccactattgaggcacctc |
3154867 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 131; Significance: 4e-68; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 17 - 199
Target Start/End: Complemental strand, 34596423 - 34596241
Alignment:
| Q |
17 |
agcagagaataaatgattatttgcgctatacgcgccttgtttgagccaagtgactagagaatgccccaagtagaagttaatattgtcaaatccaagagca |
116 |
Q |
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|
|||||||||||||| ||||||||||||| | ||||||||| ||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
34596423 |
agcagagaataaataattatttgcgctaaatgcgccttgtctgagccaagtgaccagagaattccccaagtagaagttaatattgtcaaatccaagagca |
34596324 |
T |
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| Q |
117 |
agctaaagatgcttaacaaacggacagtctcgaagaccgtgcaagatattttcactactattgaggcacctcgggcagttatt |
199 |
Q |
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| | ||||||||||||||||||||||||||||||||| |||| |||| |||||||||||||||| ||||||||||||||||| |
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| T |
34596323 |
aaccaaagatgcttaacaaacggacagtctcgaagacaatgcatgatactttcactactattgagacacctcgggcagttatt |
34596241 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 22 - 199
Target Start/End: Complemental strand, 10626422 - 10626245
Alignment:
| Q |
22 |
agaataaatgattatttgcgctatacgcgccttgtttgagccaagtgactagagaatgccccaagtagaagttaatattgtcaaatccaagagcaagcta |
121 |
Q |
| |
|
||||||||| |||||||| |||| ||||| |||| | ||||||||||||| ||||| | |||| ||||||||||||||||||||||| ||||||||| | |
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| T |
10626422 |
agaataaataattatttgtgctaaacgcgtcttgcctcagccaagtgactatagaattctccaaatagaagttaatattgtcaaatccgagagcaagcca |
10626323 |
T |
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| Q |
122 |
aagatgcttaacaaacggacagtctcgaagaccgtgcaagatattttcactactattgaggcacctcgggcagttatt |
199 |
Q |
| |
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||||||||||||||| |||| || ||| | ||||| ||| |||||| |||||||||||||||| | |||||||| |
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| T |
10626322 |
aagatgcttaacaaatagacaatcctgaaaaaagtgcaggatgctttcaccactattgaggcacctcagacagttatt |
10626245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 17 - 189
Target Start/End: Original strand, 10951635 - 10951807
Alignment:
| Q |
17 |
agcagagaataaatgattatttgcgctatacgcgccttgtttgagccaagtgactagagaatgccccaagtagaagttaatattgtcaaatccaagagca |
116 |
Q |
| |
|
|||||||||||||||| ||||||||||| | | ||||| ||||| | |||| | | ||| || ||| | ||||||||||||| |||| |||||||| |
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| T |
10951635 |
agcagagaataaatgactatttgcgctaaccacaccttgcctgagctaggtgatcataaaattcctcaaacaaaagttaatattgtgaaattcaagagca |
10951734 |
T |
|
| Q |
117 |
agctaaagatgcttaacaaacggacagtctcgaagaccgtgcaagatattttcactactattgaggcacctcg |
189 |
Q |
| |
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| ||| ||||||||||||||| |||| || |||| || | ||| | || ||||| |||||||||| ||||||| |
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| T |
10951735 |
atctagagatgcttaacaaacagacaatcccgaaaacagagcatggtactttcaatactattgagacacctcg |
10951807 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 123; Significance: 2e-63; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 17 - 199
Target Start/End: Original strand, 30407176 - 30407358
Alignment:
| Q |
17 |
agcagagaataaatgattatttgcgctatacgcgccttgtttgagccaagtgactagagaatgccccaagtagaagttaatattgtcaaatccaagagca |
116 |
Q |
| |
|
|||||||||||||||||||||||||| | |||| |||||| ||||||||||| | ||||| | ||||||||||||||||||||||||||||||||||||| |
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| T |
30407176 |
agcagagaataaatgattatttgcgccaaacgcaccttgtctgagccaagtggccagagagttccccaagtagaagttaatattgtcaaatccaagagca |
30407275 |
T |
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| Q |
117 |
agctaaagatgcttaacaaacggacagtctcgaagaccgtgcaagatattttcactactattgaggcacctcgggcagttatt |
199 |
Q |
| |
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||| |||||||||||||||| ||||| ||||||| || ||||| |||| |||||||||||||||||||||||||||||||||| |
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| T |
30407276 |
agccaaagatgcttaacaaatggacaatctcgaaaacagtgcatgatactttcactactattgaggcacctcgggcagttatt |
30407358 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 20 - 147
Target Start/End: Complemental strand, 7408208 - 7408081
Alignment:
| Q |
20 |
agagaataaatgattatttgcgctatacgcgccttgtttgagccaagtgactagagaatgccccaagtagaagttaatattgtcaaatccaagagcaagc |
119 |
Q |
| |
|
||||||||||||| ||||| | || || |||||||||||||| ||||||| ||||||| || | | ||||| |||||||||| |||||||||||||| |
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| T |
7408208 |
agagaataaatgaatatttccacttaacatgccttgtttgagccttgtgactatagaatgctcccaattgaagtgaatattgtcacatccaagagcaagc |
7408109 |
T |
|
| Q |
120 |
taaagatgcttaacaaacggacagtctc |
147 |
Q |
| |
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| |||| |||||||||| |||||||| |
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| T |
7408108 |
cagagattcttaacaaacatacagtctc |
7408081 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 22 - 137
Target Start/End: Original strand, 15402906 - 15403021
Alignment:
| Q |
22 |
agaataaatgattatttgcgctatacgcgccttgtttgagccaagtgactagagaatgccccaagtagaagttaatattgtcaaatccaagagcaagcta |
121 |
Q |
| |
|
||||||||||||||||||||||| || | ||||| | ||| | | ||| | | ||| | ||| ||| ||||||||||||||||||| ||||||||| | |
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| T |
15402906 |
agaataaatgattatttgcgctaaacacaacttgtctaagctaggcgaccatataatttctcaaatagtagttaatattgtcaaatccgagagcaagcca |
15403005 |
T |
|
| Q |
122 |
aagatgcttaacaaac |
137 |
Q |
| |
|
|||||||||||||||| |
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|
| T |
15403006 |
aagatgcttaacaaac |
15403021 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 17 - 100
Target Start/End: Complemental strand, 37706697 - 37706615
Alignment:
| Q |
17 |
agcagagaataaatgattatttgcgctatacgcgccttgtttgagccaagtgactagagaatgccccaagtagaagttaatatt |
100 |
Q |
| |
|
|||||||||||| |||||||||| |||| || ||||||| ||||||| ||||| | ||||| |||||| || ||||||||||| |
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|
| T |
37706697 |
agcagagaataa-tgattatttgtgctaaacacgccttgcctgagccatgtgaccatagaattccccaaataaaagttaatatt |
37706615 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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