View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19239_low_5 (Length: 628)
Name: NF19239_low_5
Description: NF19239
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19239_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 499; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 499; E-Value: 0
Query Start/End: Original strand, 10 - 610
Target Start/End: Original strand, 8334375 - 8334976
Alignment:
| Q |
10 |
attatacttttatcaagtctgatccagtatatcttgtgctggtaggacatgcttcggttgtttaatatatttctacttttgccggttnnnnnnnntatac |
109 |
Q |
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| T |
8334375 |
attatacttttatcaagtctgatccgatacatcttgtgctggtaggacatgcttcggttgtttaatatatttctacttttgccggttaaaaaaa-tatac |
8334473 |
T |
|
| Q |
110 |
atagagtgattgaaacatcttaacaaatatctagaatgtaatgtgtgattcaatggatgtaaaataattaaattatagtctaacactgcatgcatacaaa |
209 |
Q |
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|||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||| |
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| T |
8334474 |
atagagtgcttgaaacatctttacaaatatctagaatgtaatgtgtgattcaatggatgtaaaataattaaatgatagtctaagactgcatgcatacaaa |
8334573 |
T |
|
| Q |
210 |
ttaaattcattcataatatatcttataacatcagaattgtaatagagtaatttgatataagcttacatatttaccagctgcaaagagaaaggacatggca |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8334574 |
ttaaattcattcataatatatcttataacatcagaattgtaatagagtaatttgatataagcttacatatttaccagctgcaaagagaaaggacatggca |
8334673 |
T |
|
| Q |
310 |
gctggtttatcagtttcagcaatctcctcagcccttgttcctagctaccaactgagtcatggccaaagaatgtaattctccaaac-nnnnnnnnnattcc |
408 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
8334674 |
gctggtttatcagtttcagcaatctcctcagcccttgttcctagctaccaactgagtcatggccaaagaatgtaattctccaaacttttttttttattcc |
8334773 |
T |
|
| Q |
409 |
tcccttctcgcttataattctttgaactttatattttgcattataatttctgaa-ttttttcatgctcttctcttctttacaatggttataattttagaa |
507 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
8334774 |
tcccttctcgcttataattctttgaactttatattttgcattataatttctgaatttttttcatgctcttctcttctttacaatgcttataattttagaa |
8334873 |
T |
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| Q |
508 |
atgctctcttaattattccaggggtgcttattggctagagtctttcaatggaactcaaggtaatcaatcaattgtgatctgtaacggggatgagcagaag |
607 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8334874 |
atgctctcttaattattccaggggtgcttattggctagagtctttcaatggaactcaaggtaatcaatcaattgtgatctgtaacggggatgagcagaag |
8334973 |
T |
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| Q |
608 |
atg |
610 |
Q |
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| T |
8334974 |
atg |
8334976 |
T |
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