View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19239_low_6 (Length: 594)
Name: NF19239_low_6
Description: NF19239
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19239_low_6 |
 | |
|
| [»] chr3 (4 HSPs) |
| |
|
| [»] chr2 (4 HSPs) |
| |
|
| [»] chr4 (3 HSPs) |
| |
|
| [»] scaffold0012 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 398; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 16 - 594
Target Start/End: Original strand, 22911064 - 22911655
Alignment:
| Q |
16 |
atcagaacttgtagcttctagtttagcaataaaatccgcggatgaattcgtctccctaacataatgctttaattgaatgttccaacttctttgcaataaa |
115 |
Q |
| |
|
|||||||||||||||| ||||||||||||| ||||||||||| ||||| |||||||||||| ||||||||||||||| ||||||| | |||||||||||| |
|
|
| T |
22911064 |
atcagaacttgtagctcctagtttagcaatgaaatccgcggacgaatttgtctccctaacagaatgctttaattgaacgttccaattcctttgcaataaa |
22911163 |
T |
|
| Q |
116 |
tcctgcacattactaataattgacgcataatgatgttagagattcaccatggttgaaactaactgaacaaccatagttgaatcagagtagcaaatcacat |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
22911164 |
tcctgcacattactaataattgacgcataatgatgccagggattcaccatggttgaaactaactgaacaaccatagttgagtcagagtagcaaatcacat |
22911263 |
T |
|
| Q |
216 |
ctttatatcctctttcccaagttgctttcaatccataatacagagctaacaact-----------accagagaa-taccaacatttccagcaaaatcata |
303 |
Q |
| |
|
| ||| |||||||||||||||||||||| ||||||||||||||||||||||||| || | ||| ||||||||||||||||||| |||| |
|
|
| T |
22911264 |
ccttaaatcctctttcccaagttgcttttaatccataatacagagctaacaactctacatgtatgactaaggaaataccaacatttccagcaaacccata |
22911363 |
T |
|
| Q |
304 |
tagccaactaccatcattcatgctgagaacgccaccaaaacgagatatttcgggatttccaaaactgctgccaacaacattcaagacaacgaccatactc |
403 |
Q |
| |
|
||||||||||||||||||| ||| ||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| | |||||||| |
|
|
| T |
22911364 |
tagccaactaccatcattcctgcggagaacgccacaaaaaccagatatttcgggatttccaaaactgctgccaacaacattcaagacaaaggccatactc |
22911463 |
T |
|
| Q |
404 |
tcctctggatgc-aagtcacataacaacccctatatttgtggataatgctggagagaaaacaaaacgaagaagggctgccaaattgtaaatttttacctt |
502 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||| |||||||||||| |||||||||||| ||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
22911464 |
tcctctggatgccaagtcacataacaacccctatatctgtggataatgccggagagaaaacagaacaaagaagggctgccaaattgtaaatttttacctt |
22911563 |
T |
|
| Q |
503 |
caaggagaaaatagaaattatctcattctccatacagagtgagtctcgaacgcaccaaatccaccaaagagcagcagagaataaatgattat |
594 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||| ||||| | |||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22911564 |
caaggaaaaaatagaaattatctcattctccatacaaagtgactttcgagcgcaccaaatccaccaaagagcagcagagaataaatgattat |
22911655 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 415 - 594
Target Start/End: Complemental strand, 3155199 - 3155019
Alignment:
| Q |
415 |
caagtcacataacaacc-cctatatttgtggataatgctggagagaaaacaaaacgaagaagggctgccaaattgtaaatttttaccttcaaggagaaaa |
513 |
Q |
| |
|
||||||||||||| ||| ||| ||| |||||||| || |||||||||||| ||| ||||| |||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
3155199 |
caagtcacataacgacctcctctatacgtggataaagccggagagaaaacacaacaaagaaaggctgccaaattataaatttttaccttcaaggagaaaa |
3155100 |
T |
|
| Q |
514 |
tagaaattatctcattctccatacagagtgagtctcgaacgcaccaaatccaccaaagagcagcagagaataaatgattat |
594 |
Q |
| |
|
|| ||||||| |||||| ||||||| ||||| | ||| ||||| |||| |||||||||| ||| ||||||||||||||| |
|
|
| T |
3155099 |
tacaaattatatcattccccatacaaagtgaatttcgtgcgcacaaaattcaccaaagagacgcatagaataaatgattat |
3155019 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 119 - 594
Target Start/End: Original strand, 13995106 - 13995583
Alignment:
| Q |
119 |
tgcacattactaataattgacgcataatgatgttagagattcaccatggttgaaactaactgaacaaccatagttgaatcagagtagcaaatcacatctt |
218 |
Q |
| |
|
|||| |||||| ||||||| ||||||||||||| || ||||||| | |||||| ||||||||| ||| ||| || | ||||||||||||||||||| |
|
|
| T |
13995106 |
tgcaaattactgataattgccgcataatgatgtaag-gattcactgttagtgaaac-aactgaacagccagagtcgagtaagagtagcaaatcacatctc |
13995203 |
T |
|
| Q |
219 |
tatatcctctttcccaagttgctttcaatccataatacagagctaacaact-acca-----------gagaataccaacatttccagcaaaatcatatag |
306 |
Q |
| |
|
|||||| |||||| ||| |||||||| |||| ||||||||||||||||| | || | |||||||||||||||| | |||||||| |
|
|
| T |
13995204 |
tatatcatctttctaaagctgctttcatgccatgatacagagctaacaactcaacatgcatgattgtggaaataccaacatttccaac----tcatatag |
13995299 |
T |
|
| Q |
307 |
ccaactaccatcattcatgctgagaacgccaccaaaacgagatatttcgggatttccaaaactgctgccaacaacattcaagacaacgaccatactctcc |
406 |
Q |
| |
|
|||||| ||||||||| | |||||||||||||||| |||| ||| ||||||||||||| || || || ||||||||||||||||| ||| ||||||| |
|
|
| T |
13995300 |
ccaactgccatcattcctatgaagaacgccaccaaaaccagatgttttgggatttccaaaattgatgtcatcaacattcaagacaacggccagactctcc |
13995399 |
T |
|
| Q |
407 |
tctggat-gcaagtcacataacaacc-cctatatttgtggataatgctggagagaaaacaaaacgaagaagggctgccaaattgtaaatttttaccttca |
504 |
Q |
| |
|
| |||| ||||||||| ||||||| | ||||||||||||||| || ||| |||| || || || |||| ||||| ||||||||||| | |
|
|
| T |
13995400 |
ttcggataccaagtcacacaacaacctcatatatttgtggataaagc--cagactctacaa---tttgatggtct-ccaagttgtagatttttaccttta |
13995493 |
T |
|
| Q |
505 |
aggagaaaatagaaattatctcattctccatacagagtgagtctcgaacgcaccaaatccaccaaagagcagcagagaataaatgattat |
594 |
Q |
| |
|
|||| |||||||||||||||||| |||||||||| ||||||| | | |||| |||||||| || || |||||| ||||||||||||| |
|
|
| T |
13995494 |
aggataaaatagaaattatctcactctccatacaaagtgagttttgtgtgcacaaaatccacaaacgattagcagataataaatgattat |
13995583 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 16 - 76
Target Start/End: Original strand, 53507800 - 53507860
Alignment:
| Q |
16 |
atcagaacttgtagcttctagtttagcaataaaatccgcggatgaattcgtctccctaaca |
76 |
Q |
| |
|
|||||| |||| |||| ||||||||||||| ||||||||||| |||||||||||||||||| |
|
|
| T |
53507800 |
atcagagcttgcagctcctagtttagcaatgaaatccgcggacgaattcgtctccctaaca |
53507860 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 311; Significance: 1e-175; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 16 - 594
Target Start/End: Complemental strand, 34597007 - 34596404
Alignment:
| Q |
16 |
atcagaacttgtagcttctagtttagcaataaaatccgcggatgaattcgtctccctaacataatgctttaattgaatgttccaacttctttgcaataaa |
115 |
Q |
| |
|
||||||||||| |||| ||||||||||||| |||||| |||| | |||||||||||||||| |||||||||| |||| ||||||| |||||||||||| |
|
|
| T |
34597007 |
atcagaacttgcagctcctagtttagcaatgaaatccacggacggattcgtctccctaacagaatgctttaactgaacaatccaactcctttgcaataaa |
34596908 |
T |
|
| Q |
116 |
tcctgcacattactaataattgacgcataatgatgttagagattcaccatggttgaaactaactgaacaaccatagttgaatcagagtagcaaatcac-- |
213 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||| || |||||||||||||||||| |||||||||| ||| |||||| ||||||||| ||||||| |
|
|
| T |
34596907 |
tcctgcacatttctaataattgacgcataatgatgccagggattcaccatggttgaaattaactgaacagccagagttgagtcagagtagaaaatcacat |
34596808 |
T |
|
| Q |
214 |
---atctttatatcctctttcccaagttgctttcaatccataatacagagctaacaa--ctac----------cagagaataccaacatttccagcaaaa |
298 |
Q |
| |
|
|||||||||||||||||| |||| |||||||||||||||||||||||||||||| |||| | | ||||||||||||||||||||| |
|
|
| T |
34596807 |
catatctttatatcctctttctcaagctgctttcaatccataatacagagctaacaactctacatgtatgactctggaaataccaacatttccagcaaac |
34596708 |
T |
|
| Q |
299 |
tcatatagccaactaccatcattcatgctgagaacgccaccaaaacgagatatttcgggatttccaaaactgctgccaacaacattcaagacaacgacca |
398 |
Q |
| |
|
||| ||||||||||||||||||| ||| |||||||||| ||||| ||||||||||||||||||||| ||||| ||| ||||||||||||||||| ||| |
|
|
| T |
34596707 |
ccatgtagccaactaccatcattcctgcgaagaacgccacaaaaactagatatttcgggatttccaaagctgctaccatcaacattcaagacaacggcca |
34596608 |
T |
|
| Q |
399 |
tactctcctctggatg-caagtcacataacaacc-cctatatttgtggataatgctggagagaaaacaaaacgaagaagggctgccaaattgtaaatt-- |
494 |
Q |
| |
|
|||||||||||||||| ||||||||||||| ||| ||||||| ||||||||||| ||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
34596607 |
tactctcctctggatgccaagtcacataacgacctcctatatccgtggataatgccggagagaaaacaaaacgaagaagggttgccaaattgtaaatttt |
34596508 |
T |
|
| Q |
495 |
----tttaccttcaaggagaaaatagaaattatctcattctccatacagagtgagtctcgaacgcaccaaatccaccaaagagcagcagagaataaatga |
590 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||| |||| |||||||||||||||||||||||||||||||||||| | |
|
|
| T |
34596507 |
tacctttaccttcaaggagaaaatagaaattatctcattctccatacaaagtgagtttcgagcgcaccaaatccaccaaagagcagcagagaataaataa |
34596408 |
T |
|
| Q |
591 |
ttat |
594 |
Q |
| |
|
|||| |
|
|
| T |
34596407 |
ttat |
34596404 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 329 - 590
Target Start/End: Original strand, 10951387 - 10951650
Alignment:
| Q |
329 |
agaacgccaccaaaacgagatatttcgggatttccaaaactgctgccaacaacattcaagacaacgaccatactctcctctggatgc-aagtcacataac |
427 |
Q |
| |
|
|||| ||| ||||||| ||||||| | |||||| ||||| || ||||| |||||||||||||||||||||||||||||||| ||||| |||||||||||| |
|
|
| T |
10951387 |
agaatgccgccaaaaccagatattccaggattttcaaaattgttgccatcaacattcaagacaacgaccatactctcctctagatgccaagtcacataac |
10951486 |
T |
|
| Q |
428 |
aaccc-ctatatttgtggataatgctggagagaaaacaaaacgaagaagggctgccaaattgtaaatttttaccttcaaggagaaaatagaaattatctc |
526 |
Q |
| |
|
|||| |||||| |||||||||||| |||||||||||| ||| | ||||| ||| ||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
10951487 |
aaccttctatatctgtggataatgccggagagaaaacagaactaggaaggactgacaaattgtaaatttttaccttcaaggagaaaatagaaatcgtctc |
10951586 |
T |
|
| Q |
527 |
attctccatacagagtgagtctcgaacgcaccaaatccaccaaagagcagcagagaataaatga |
590 |
Q |
| |
|
|||||||||||| | ||||| |||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10951587 |
attctccatacaaaatgagtttcgagcgcaccaaatccaccaaagagcagcagagaataaatga |
10951650 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 356 - 572
Target Start/End: Complemental strand, 10626636 - 10626420
Alignment:
| Q |
356 |
ggatttccaaaactgctgccaacaacattcaagacaacgaccatactctcctctggatgc-aagtcacataacaacccct-atatttgtggataatgctg |
453 |
Q |
| |
|
|||||||||||| || || | |||||||||| |||||||||||||||||||| |||| ||| ||||||| ||| || |||| |||||||| | | |
|
|
| T |
10626636 |
ggatttccaaaattgttgtcgtcaacattcaacacaacgaccatactctcctccaaatgccaag--acataacgacctcttatatccgtggataaaaccg |
10626539 |
T |
|
| Q |
454 |
gagagaaaacaaaacgaagaagggctgccaaattgtaaatttttaccttcaaggagaaaatagaaattatctcattctccatacagagtgagtctcgaac |
553 |
Q |
| |
|
|||||||||||||| |||||||||||| ||||||||||||||||| ||| |||||||||||||||||||||||||||||||||| ||||||| ||| |
|
|
| T |
10626538 |
aagagaaaacaaaacaaagaagggctgcaaaattgtaaatttttacattcgaggagaaaatagaaattatctcattctccatacaaagtgagtttcgtgt |
10626439 |
T |
|
| Q |
554 |
gcaccaaatccaccaaaga |
572 |
Q |
| |
|
||||||||||| |||||| |
|
|
| T |
10626438 |
ccaccaaatccaacaaaga |
10626420 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 101 - 232
Target Start/End: Complemental strand, 41221399 - 41221268
Alignment:
| Q |
101 |
cttctttgcaataaatcctgcacattactaataattgacgcataatgatgttagagattcaccatggttgaaactaactgaacaaccatagttgaatcag |
200 |
Q |
| |
|
|||||||||||||||| |||||||||||| ||||||| |||||||||||| | | ||||| |||| ||||||||||||||||||||| ||| || | || |
|
|
| T |
41221399 |
cttctttgcaataaattctgcacattactgataattgccgcataatgatgccaaaaattcatcatgattgaaactaactgaacaaccaaagtcgagtaag |
41221300 |
T |
|
| Q |
201 |
agtagcaaatcacatctttatatcctctttcc |
232 |
Q |
| |
|
|||||||||||||||| |||||||||||||| |
|
|
| T |
41221299 |
agtagcaaatcacatccctatatcctctttcc |
41221268 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 287; Significance: 1e-161; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 16 - 594
Target Start/End: Original strand, 30406603 - 30407195
Alignment:
| Q |
16 |
atcagaacttgtagcttctagtttagcaataaaatccgcggatgaattcgtctccctaacataatgctttaattgaatgttccaacttctttgcaataaa |
115 |
Q |
| |
|
||||||||||| |||| ||||||||||||| ||||||||||||||||| |||||||||||| |||||||||| |||||||||||||| | |||||||||| |
|
|
| T |
30406603 |
atcagaacttgcagctcctagtttagcaatgaaatccgcggatgaatttgtctccctaacaaaatgctttaactgaatgttccaactccattgcaataaa |
30406702 |
T |
|
| Q |
116 |
tcctgcacattactaataattgacgcataatgatgttagagattcaccatggttgaaactaactgaacaaccatagttgaatcagagtagcaaatcacat |
215 |
Q |
| |
|
|| ||||||||||||||||||| |||||||||||| || |||||| |||||||||||||||||||| | || |||||| ||| ||||||||||||||| |
|
|
| T |
30406703 |
tcttgcacattactaataattgccgcataatgatgcgagggattcatcatggttgaaactaactgaataggcagagttgagtcaaagtagcaaatcacat |
30406802 |
T |
|
| Q |
216 |
ctttatatcctctttcccaagttgctttcaatccataatacagagctaacaactac-ca-----------gagaataccaacatttccagcaaaatcata |
303 |
Q |
| |
|
| ||||| |||| ||||||| ||||||||||||||||||||||||| |||||| || | ||||||| ||||||||||||| ||| |
|
|
| T |
30406803 |
ccatatattctctatcccaagctgctttcaatccataatacagagctgacaactctacatgtatgattgtggaaataccagcatttccagcaaaccaata |
30406902 |
T |
|
| Q |
304 |
tagccaactaccatcattcatgctgagaacgccaccaaaacgagatatttcgggatttccaaaactgctgccaacaacattcaagacaacgaccatactc |
403 |
Q |
| |
|
||||||||||||||||||| ||| | |||||||||||||| ||||||| | ||||||||||| | ||||| ||||||||||||||||| |||||||| |
|
|
| T |
30406903 |
tagccaactaccatcattcctgcaaacaacgccaccaaaaccagatattccaaaatttccaaaaccgttgccatcaacattcaagacaacggccatactc |
30407002 |
T |
|
| Q |
404 |
tcctctggatgc-aagtcacataacaacc-cctatatttgtggataatgctggagagaaaacaaaacgaagaagggctgccaaattgtaaatttttacct |
501 |
Q |
| |
|
|||||||||||| |||||||||||| ||| ||||||| ||||||||||| | |||||||||| |||||| |||||||| |||||||||||||||||||| |
|
|
| T |
30407003 |
tcctctggatgccaagtcacataacgacctcctatatctgtggataatgtcgaagagaaaacagaacgaataagggctgtcaaattgtaaatttttacct |
30407102 |
T |
|
| Q |
502 |
tcaaggagaaaatagaaattatctcattctccatacagagtgagtctcgaacgcaccaaatccaccaaagagcagcagagaataaatgattat |
594 |
Q |
| |
|
||||| |||||||| |||||||||||||||||||||| ||||||| |||| |||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
30407103 |
tcaagaagaaaatataaattatctcattctccatacaaagtgagtttcgagcgcaccaaatccacaaaagagcagcagagaataaatgattat |
30407195 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 17 - 594
Target Start/End: Original strand, 53244235 - 53244824
Alignment:
| Q |
17 |
tcagaacttgtagcttctagtttagcaataaaatccgcggatgaattcgtctccctaacataatgctttaattgaatgttccaacttctttgcaataaat |
116 |
Q |
| |
|
|||||| ||||||| |||||||||| |||||||| ||||| | || | ||||| |||||||| ||||| | | | |||| || |||||||||||| |
|
|
| T |
53244235 |
tcagaatttgtagcgcctagtttagccataaaatcagcggacaattttgcatccctcacataatgttttaacttgacgctccagctcatttgcaataaat |
53244334 |
T |
|
| Q |
117 |
cctgcacattactaataattgacgcataatgatgttagagattcaccatggttgaaactaactgaacaaccatagttgaatcagagtagcaaatcacatc |
216 |
Q |
| |
|
| || |||||||| ||||||| |||||| ||||| | |||||| ||||||| ||||| |||||||| || ||| || |||||||| |||||||||| |
|
|
| T |
53244335 |
cttgtacattactcataattgttgcataacgatgtcaatgattcaacatggttaaaactgactgaacagcccgagtcgagtcagagtaacaaatcacatt |
53244434 |
T |
|
| Q |
217 |
tttatatcctctttcccaagttgctttcaatccataatacagagctaacaactac-ca-----------gagaataccaacatttccagcaaaatcatat |
304 |
Q |
| |
|
||||||||||||||||| |||| || ||| |||||||| |||||||| || | ||||||||||||||||||||| ||||| |
|
|
| T |
53244435 |
catatatcctctttcccaaacaactttgaagtcatgatacagagttaacaactctacatgtatgattgtggaaataccaacatttccagcaaacccatat |
53244534 |
T |
|
| Q |
305 |
agccaactaccatcattcatgctgagaacgccaccaaaacgagatatttcgggatttccaaaactgctgccaacaacattcaagacaacgaccatactct |
404 |
Q |
| |
|
|||||| | | |||||| | | |||||||||||||||| |||||||||||||||||||||| || || || ||||||||||||||| | ||||||||| |
|
|
| T |
53244535 |
agccaattgtcgtcattcctacggagaacgccaccaaaataagatatttcgggatttccaaaattgttgtcatcaacattcaagacaatggccatactct |
53244634 |
T |
|
| Q |
405 |
cctctggatgc-aagtcacataacaacc-cctatatttgtggataatgctggagagaaaacaaaacgaagaagggctgccaaattgtaaatttttacctt |
502 |
Q |
| |
|
|||| ||||| ||||||||||| || |||||||| |||||||| || ||||||| |||||| ||||||| | ||||||||||||||||||||||| |
|
|
| T |
53244635 |
cctccagatgccaagtcacataatgacgtcctatattcgtggataaggccagagagaa--caaaacaaagaaggaccgccaaattgtaaatttttacctt |
53244732 |
T |
|
| Q |
503 |
caaggagaaaatagaaattatctcattctccatacagagtgagtctcgaacgcaccaaatccaccaaagagcagcagagaataaatgattat |
594 |
Q |
| |
|
| ||| ||||||||| |||||||||||||||||||| ||||||| || ||||||||||||| |||||| || || ||||||||| ||||| |
|
|
| T |
53244733 |
ctaggggaaaatagagattatctcattctccatacaaagtgagtttcctgcgcaccaaatccatcaaagaacaacaaagaataaattattat |
53244824 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 128; E-Value: 7e-66
Query Start/End: Original strand, 17 - 590
Target Start/End: Complemental strand, 7408782 - 7408196
Alignment:
| Q |
17 |
tcagaacttgtagcttctagtttagcaataaaatccgcggatgaattcgtctccctaacataatgctttaattgaatgttccaacttctttgcaataaat |
116 |
Q |
| |
|
|||||||||| |||| ||| |||||| || |||||| |||| ||||| | ||||| | | |||| | ||| |||| | |||| || ||||||| |||| |
|
|
| T |
7408782 |
tcagaacttggagctcctaatttagccatgaaatccacggacgaatttgaatccctcatagaatgttgtaactgaacgctccatctactttgcagcaaat |
7408683 |
T |
|
| Q |
117 |
cctgcacattactaataattgacgcataatgatgttagagattcaccatggttgaaactaactgaacaaccatagttgaatcagagtagcaaatcacatc |
216 |
Q |
| |
|
||||||||||| | || |||| ||||||||| || | ||||||||||||||||||||||||||||||||| | ||||||||| | ||||| || | |
|
|
| T |
7408682 |
cctgcacattattgatgattgccgcataatggtgccaaggattcaccatggttgaaactaactgaacaaccaacttcgaatcagagcaacaaatgaccgc |
7408583 |
T |
|
| Q |
217 |
tttatatcctctttcccaagttgctttcaatccataatacagagctaacaact--acca-----------gagaataccaacatttccagcaaaatcata |
303 |
Q |
| |
|
|||||||||||||||||| ||||||||| |||| ||||||||||||||||| || || |||||||||||| |||||||| |||| |
|
|
| T |
7408582 |
catatatcctctttcccaagctgctttcaagccatgatacagagctaacaactcgacgtttatgttggttga-aataccaacattaccagcaaacccata |
7408484 |
T |
|
| Q |
304 |
tagccaactaccatcattcatgctgagaacgccaccaaaacgagatatttcgggatttccaaaactgctgccaacaacattcaagacaacgaccatactc |
403 |
Q |
| |
|
|||||||| |||||| || | | ||| | ||||||| ||||||| |||||||| ||| ||| |||||| |||||||||||||||||||||||| |
|
|
| T |
7408483 |
aagccaactgccatcactcca-cgaataacacaaccaaaatcagatattccgggattttcaagactactgccattaacattcaagacaacgaccatactt |
7408385 |
T |
|
| Q |
404 |
tcctctggatg-caagtcacataacaacc-cctatatttgtggataatgctggagagaaaacaaaacgaagaagggctgccaaattgtaaatttttacct |
501 |
Q |
| |
|
|| ||| | || ||||||| ||||| ||| || ||||| |||||||| || | |||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
7408384 |
tcatctaggtgtcaagtcatataacgacctccaatattcgtggataaagccaggaagaaaacaaaacagagaagggctgccaaattgtaaatttttacct |
7408285 |
T |
|
| Q |
502 |
tcaaggagaaaatagaaattatctcattctccatacagagtgagtctcgaacgcaccaaatccaccaaagagcagcagagaataaatga |
590 |
Q |
| |
|
||||| | |||||||||||||||||||||| |||||| ||||||| | | ||||||||||||||||||||| ||||||||||||| |
|
|
| T |
7408284 |
tcaagaaaaaaatagaaattatctcattctgcatacaaagtgagtttaatgcacaccaaatccaccaaagagcataagagaataaatga |
7408196 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 175; Significance: 6e-94; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 175; E-Value: 6e-94
Query Start/End: Original strand, 22 - 586
Target Start/End: Complemental strand, 37707252 - 37706686
Alignment:
| Q |
22 |
acttgtagcttctagtttagcaataaaatccgcggatgaattcgtctccctaacataatgctttaattgaatgttccaacttctttgcaataaatcctgc |
121 |
Q |
| |
|
||||| |||| |||||||||| || ||||| || || |||||| |||||| ||| |||||||||| || | ||| || ||||| |||||||||||| |
|
|
| T |
37707252 |
acttgcagctcctagtttagccatgaaatcagcagaccaattcgcctccctcacagaatgctttaactgggcgcgccagctcctttgtaataaatcctgc |
37707153 |
T |
|
| Q |
122 |
acattactaataattgacgcataatgatgttagagattcaccatggttgaaactaactgaacaaccatagttgaatcagagtagcaaatcacatctttat |
221 |
Q |
| |
|
|||||||| || |||| |||||||||||| | ||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||| ||| |
|
|
| T |
37707152 |
acattactgatgattgtcgcataatgatgccaaggattcaccatggttgaaactaactgaacaaccagagttgagtcagagtagcaaatcacatccctat |
37707053 |
T |
|
| Q |
222 |
atcctctttcccaagttgctttcaatccataatacagagctaacaa--ctac----caga------gaataccaacatttccagcaaaatcatatagcca |
309 |
Q |
| |
|
| ||||||||||||| ||||||| | |||| ||||| ||||||||| |||| ||| ||||||||||||||||||||| |||||||||| |
|
|
| T |
37707052 |
accctctttcccaagatgctttc-agccatgatacaaagctaacaactctacatgtaagattgtggaaataccaacatttccagcaaacccatatagcca |
37706954 |
T |
|
| Q |
310 |
actaccatcattcatgctgagaacgccaccaaaacgagatatttcgggatttccaaaactgctgccaacaacattcaagacaacgaccatactctcctct |
409 |
Q |
| |
|
||| ||||||||| | | ||||| | |||||||| | ||||| | |||||||||||||| ||||| ||||||||| || |||||||| |||||| ||| |
|
|
| T |
37706953 |
actgccatcattcctacgaagaacactaccaaaaccaaatattccaggatttccaaaactattgccatcaacattcaggataacgaccacactctcatct |
37706854 |
T |
|
| Q |
410 |
ggatg-caagtcacataacaacccctatatttgtggataatgctggagagaaaacaaaacgaagaagggctgccaaattgtaaatttttaccttcaagga |
508 |
Q |
| |
|
||||| |||||||||| | |||| ||||||| || |||||||||||| || |||||||||||||||||||||| ||||| |||||||| || |
|
|
| T |
37706853 |
ggatgccaagtcacat-ataacc---------atggataaagccggagagaaaacagaatgaagaagggctgccaaattgtagattttcaccttcaaaga |
37706764 |
T |
|
| Q |
509 |
gaaaatagaaattatctcattctccatacagagtgagtctcgaacgcaccaaatccaccaaagagcagcagagaataa |
586 |
Q |
| |
|
|| ||||||||||||||||||||| | ||| || |||| |||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
37706763 |
gacaatagaaattatctcattctctaaacaaagagagtttcgagcgcaccaaatccaccaaagagcagcagagaataa |
37706686 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 277 - 594
Target Start/End: Original strand, 15402601 - 15402920
Alignment:
| Q |
277 |
aataccaacatttccagcaaaatcatatagccaactaccatcattcatgctgagaacgccaccaaaacgagatatttcgggatttccaaaactgctgcca |
376 |
Q |
| |
|
||||||||||||||||||||| |||||| | |||| ||||||||| | | | || ||||||||||| ||||||| |||||||| | ||| || ||||| |
|
|
| T |
15402601 |
aataccaacatttccagcaaacccatatatctaactgccatcattcctacgaaaaatgccaccaaaactagatattccgggattttcgaaattgttgcca |
15402700 |
T |
|
| Q |
377 |
acaacattcaagacaacgaccatactctcctctggatgc-aagtcacataacaacccct-atatttgtggataatgctggagagaaaacaaaacgaagaa |
474 |
Q |
| |
|
|||||||||||||||| ||| |||||| ||| |||| | |||||||||||| ||| || |||| ||||| ||| | |||||||||||| ||||||||| |
|
|
| T |
15402701 |
tcaacattcaagacaacaaccgtactcttctcaggataccaagtcacataacgacctcttatatatgtggttaaagtcggagagaaaacagaacgaagaa |
15402800 |
T |
|
| Q |
475 |
gggctgccaaattgtaaatttttaccttcaaggagaaaatagaaattatctcattctccatacagagtgagtctcgaacgcaccaaatccaccaaagagc |
574 |
Q |
| |
|
||| |||| |||| |||| || |||||||||| | || ||| ||||||| |||||||||||||||||||| | | || |||||||||||||||||||||| |
|
|
| T |
15402801 |
gggttgccgaattataaaattctaccttcaagcaaaatatataaattatttcattctccatacagagtgacttttgagcgcaccaaatccaccaaagagc |
15402900 |
T |
|
| Q |
575 |
agcagagaataaatgattat |
594 |
Q |
| |
|
| | ||||||||||||||| |
|
|
| T |
15402901 |
ataaaagaataaatgattat |
15402920 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 104; Significance: 1e-51; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 127 - 412
Target Start/End: Original strand, 32467324 - 32467624
Alignment:
| Q |
127 |
actaataattgacgcataatgatgttagagattcaccatggttgaaactaactga----acaaccatagttgaatcagagtagcaaatcacatctttata |
222 |
Q |
| |
|
||||||||||||||||| ||||||| | || ||||||||||||||||||||| | | ||||| |||||| | |||||||||||||| ||| ||||| |
|
|
| T |
32467324 |
actaataattgacgcatgatgatgtcaaggactcaccatggttgaaactaactaactaaataaccagagttgagttagagtagcaaatcaaatccttata |
32467423 |
T |
|
| Q |
223 |
tcctctttcccaagttgctttcaatccataatacagagctaacaact------------accagagaataccaacatttccagcaaaatcatatagccaa |
310 |
Q |
| |
|
|||||||||| ||| | |||||||||||||||| ||||||||||||| | | ||||||||||||| ||||||| ||||||||||| |
|
|
| T |
32467424 |
tcctctttcc-aagctactttcaatccataatatagagctaacaactctacatgtataaatgtggaaataccaacattttcagcaaacccatatagccaa |
32467522 |
T |
|
| Q |
311 |
ctaccatcattcatgctgagaacgccaccaaaacgagatatttcgggatttccaaaactgctgccaacaacattcaagacaacgaccatactctcctctg |
410 |
Q |
| |
|
|||||||||||| ||| ||||||||||| |||| |||||||| ||||||| |||||||||||||| ||||||||||||||||| |||||||||||||| |
|
|
| T |
32467523 |
ctaccatcattcctgcgaagaacgccaccgaaaccagatattttgggattttcaaaactgctgccatcaacattcaagacaacggtcatactctcctctg |
32467622 |
T |
|
| Q |
411 |
ga |
412 |
Q |
| |
|
|| |
|
|
| T |
32467623 |
ga |
32467624 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 16 - 87
Target Start/End: Original strand, 32467253 - 32467324
Alignment:
| Q |
16 |
atcagaacttgtagcttctagtttagcaataaaatccgcggatgaattcgtctccctaacataatgctttaa |
87 |
Q |
| |
|
|||| ||||||||||| ||| ||||||||| ||||||||||| ||||||||||||||| || |||||||||| |
|
|
| T |
32467253 |
atcataacttgtagctcctaatttagcaatgaaatccgcggacgaattcgtctccctatcagaatgctttaa |
32467324 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 104 - 182
Target Start/End: Original strand, 26752678 - 26752756
Alignment:
| Q |
104 |
ctttgcaataaatcctgcacattactaataattgacgcataatgatgttagagattcaccatggttgaaactaactgaa |
182 |
Q |
| |
|
|||| ||||||||| ||||||||| | |||||| |||||||| ||| | ||||||||||||||| |||||||||||| |
|
|
| T |
26752678 |
ctttacaataaatcttgcacattaatgataattaccgcataattatgccaaagattcaccatggtttaaactaactgaa |
26752756 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0012 (Bit Score: 98; Significance: 6e-48; HSPs: 1)
Name: scaffold0012
Description:
Target: scaffold0012; HSP #1
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 27 - 216
Target Start/End: Complemental strand, 234392 - 234203
Alignment:
| Q |
27 |
tagcttctagtttagcaataaaatccgcggatgaattcgtctccctaacataatgctttaattgaatgttccaacttctttgcaataaatcctgcacatt |
126 |
Q |
| |
|
||||| ||||||||||||| ||||||||| | ||||| |||||||||||| |||||||||| || | | ||||||| |||||||| ||||| |||||||| |
|
|
| T |
234392 |
tagctcctagtttagcaatgaaatccgcgaacgaattggtctccctaacagaatgctttaactggacgctccaactcctttgcaaaaaatcttgcacatt |
234293 |
T |
|
| Q |
127 |
actaataattgacgcataatgatgttagagattcaccatggttgaaactaactgaacaaccatagttgaatcagagtagcaaatcacatc |
216 |
Q |
| |
|
||||||||||| |||||||||||| | ||||||||||||||||||||||||||||| | |||||||||||||||| |||||||||| |
|
|
| T |
234292 |
actaataattgccgcataatgatgccaaggattcaccatggttgaaactaactgaacagaccgagttgaatcagagtaggaaatcacatc |
234203 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 203 - 246
Target Start/End: Complemental strand, 41915276 - 41915233
Alignment:
| Q |
203 |
tagcaaatcacatctttatatcctctttcccaagttgctttcaa |
246 |
Q |
| |
|
|||||||||||||| |||||||||||||||| ||||||||||| |
|
|
| T |
41915276 |
tagcaaatcacatccctatatcctctttcccatgttgctttcaa |
41915233 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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