View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19239_low_7 (Length: 578)

Name: NF19239_low_7
Description: NF19239
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19239_low_7
NF19239_low_7
[»] chr8 (3 HSPs)
chr8 (18-399)||(3586703-3587084)
chr8 (469-568)||(3587156-3587255)
chr8 (210-256)||(3574501-3574547)
[»] chr7 (2 HSPs)
chr7 (462-513)||(28195375-28195426)
chr7 (188-242)||(21979083-21979138)
[»] chr1 (1 HSPs)
chr1 (478-520)||(35812111-35812153)
[»] chr2 (1 HSPs)
chr2 (465-524)||(2703106-2703166)
[»] chr6 (1 HSPs)
chr6 (95-137)||(10506505-10506547)
[»] chr3 (2 HSPs)
chr3 (478-520)||(28145037-28145079)
chr3 (198-241)||(28080376-28080420)


Alignment Details
Target: chr8 (Bit Score: 358; Significance: 0; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 18 - 399
Target Start/End: Original strand, 3586703 - 3587084
Alignment:
Q  18 atgatcccttggtagataagacttgcattgaactttgacagattaagctgggtttcttagaagtttaaatttaaatatcttgttccagcaaagtttcact 117  Q
    |||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3586703 atgatcccttggtagacaagacttgcattgaactttgacagattacgctgggtttcttagaagtttaaatttaaatatcttgttccagcaaagtttcact 3586802  T
Q  118 acatgtagttgaagtttcaagttcaaatttcaagtgttatcttctggagcgtgaagatggaggttatatgcggtacttttggtactccatttttattcat 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  3586803 acatgtagttgaagtttcaagttcaaatttcaagtgttatcttctggagcgtgaagatggaggttatatacggtacttttggtactccatttttattcat 3586902  T
Q  218 tttctattgtgagtgaaaattgtgggttctcttgtatatggtcaccgaaagggccggcaccactaataaggtcagtacttttcgagctgctgcccatgat 317  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3586903 tttctattgtgagtgaaaattgtgggttctcttgtaaatggtcaccgaaagggccggcaccactaataaggtcagtacttttcgagctgctgcccatgat 3587002  T
Q  318 gctgctaatgtgcttgaacttcctcctgatgtggttgacatagtttcacgtttggcccatacagtgttacacgagcatatga 399  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||    
T  3587003 gctgctaatgtgcttgaacttcctcctgatgtggttgacatagtttcacgtttggcccgtatagtgttacacgagcatatga 3587084  T

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Target: chr8; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 469 - 568
Target Start/End: Original strand, 3587156 - 3587255
Alignment:
Q  469 aaaatttagctctcatgttatattatataacaaaattcatgatttcattgacatatttatatattaannnnnnnaaaattgttgtattctcgtacctttg 568  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||       ||||||||||||||||||||||||||    
T  3587156 aaaatttagctctcatgttatattatataacaaaattcatgatttcattgacgtatttatatattaatttttataaaattgttgtattctcgtacctttg 3587255  T

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Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 210 - 256
Target Start/End: Original strand, 3574501 - 3574547
Alignment:
Q  210 ttattcattttctattgtgagtgaaaattgtgggttctcttgtatat 256  Q
    ||||||||||| |||||||||||||||| ||||||||||||||||||    
T  3574501 ttattcattttttattgtgagtgaaaatcgtgggttctcttgtatat 3574547  T

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Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 462 - 513
Target Start/End: Original strand, 28195375 - 28195426
Alignment:
Q  462 aagttgaaaaatttagctctcatgttatattatataacaaaattcatgattt 513  Q
    |||||||| ||||||| ||||||||||||||||||||||||| |||||||||    
T  28195375 aagttgaagaatttaggtctcatgttatattatataacaaaactcatgattt 28195426  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 188 - 242
Target Start/End: Complemental strand, 21979138 - 21979083
Alignment:
Q  188 cggtacttttggtactccatttttattcatt-ttctattgtgagtgaaaattgtgg 242  Q
    ||||||||||||||||||||||||  ||||| |||||||||||||| ||| |||||    
T  21979138 cggtacttttggtactccatttttgctcattattctattgtgagtggaaaatgtgg 21979083  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 478 - 520
Target Start/End: Complemental strand, 35812153 - 35812111
Alignment:
Q  478 ctctcatgttatattatataacaaaattcatgatttcattgac 520  Q
    |||||||||||||||||||||||||| ||||||||| ||||||    
T  35812153 ctctcatgttatattatataacaaaactcatgattttattgac 35812111  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 465 - 524
Target Start/End: Complemental strand, 2703166 - 2703106
Alignment:
Q  465 ttgaaaaatttagct-ctcatgttatattatataacaaaattcatgatttcattgacatat 524  Q
    ||||| ||||||||| ||||||||| |||||||||||||| || |||||| ||||||||||    
T  2703166 ttgaataatttagcttctcatgttacattatataacaaaagtcgtgattttattgacatat 2703106  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 95 - 137
Target Start/End: Complemental strand, 10506547 - 10506505
Alignment:
Q  95 tcttgttccagcaaagtttcactacatgtagttgaagtttcaa 137  Q
    |||||||| |||||||||||||||||| | |||||||||||||    
T  10506547 tcttgttcaagcaaagtttcactacatattgttgaagtttcaa 10506505  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 478 - 520
Target Start/End: Original strand, 28145037 - 28145079
Alignment:
Q  478 ctctcatgttatattatataacaaaattcatgatttcattgac 520  Q
    |||||||||||||||||||| ||||| ||||||||| ||||||    
T  28145037 ctctcatgttatattatatagcaaaactcatgattttattgac 28145079  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 198 - 241
Target Start/End: Original strand, 28080376 - 28080420
Alignment:
Q  198 ggtactccatttttattcatt-ttctattgtgagtgaaaattgtg 241  Q
    |||||| ||||||| |||||| |||||||||||||||||||||||    
T  28080376 ggtacttcatttttgttcattattctattgtgagtgaaaattgtg 28080420  T

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