View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19239_low_8 (Length: 541)
Name: NF19239_low_8
Description: NF19239
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19239_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 313; Significance: 1e-176; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 148 - 523
Target Start/End: Complemental strand, 29337267 - 29336889
Alignment:
| Q |
148 |
tagaacataaagaactagtactagctttcatt----ttaccctctattagtgctttaagaacataaataaaaggacacacaagcttcttttgtcttctca |
243 |
Q |
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| T |
29337267 |
tagaacataaagaactagtactagctttcattaattttaccctctattagtgctttaagaacataaataaaaggacacacaagcttcttttgtcttctca |
29337168 |
T |
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| Q |
244 |
taaccaaccattccaaagaagaaacaatggaaaaacatgtctccaatttccaaagcagtttatagttgatctcagaagcaagcaaccatcagtttgaact |
343 |
Q |
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| T |
29337167 |
taaccaaccattccaaagaagaaacaatggaaaaacatgtctccaatttccaaagcagtttatagttgatctcagaagcaagcaaccatcagtttgaact |
29337068 |
T |
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| Q |
344 |
tg-aacttaagagagggtatgtaacactctttattttcaacctgttctaaacttctgattgtgttctttcttggtttctaggtaatttagaacttataat |
442 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| | ||||||| |
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| T |
29337067 |
tgaaacttaagagagggtatgtaacactctttattttcaacctgttctaaacttctgactgtgttctttcttggtttctaggtaa--cactctttataat |
29336970 |
T |
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| Q |
443 |
cactagattttcatcatctcattcatgctctagttttgcaccaccaccaaactatattttgctctctaaaccaacacatgt |
523 |
Q |
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| T |
29336969 |
cactagattttcatcatctcattcatgctctagttttgcacccgcaccaaactatattttgctctctaaaccaacacatgt |
29336889 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 16 - 77
Target Start/End: Complemental strand, 29337399 - 29337338
Alignment:
| Q |
16 |
acatcatcttacctttgctttcccataaataaacatcaatgcccaccatcctactgtctctc |
77 |
Q |
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| T |
29337399 |
acatcatcttacctttgctttcccataaataaacatcaatgcccaccatcctactgtctctc |
29337338 |
T |
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