View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1923_high_5 (Length: 271)
Name: NF1923_high_5
Description: NF1923
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1923_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 31 - 265
Target Start/End: Original strand, 53229875 - 53230109
Alignment:
| Q |
31 |
tagtttattactgtttgatctaagatcaatctcaaattctcaatggccaccgttttgtatccaaacgcaaaggaacaaacaattgctacaactacaaaga |
130 |
Q |
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| T |
53229875 |
tagtttattactgtttgatctaagatcaatctcaaattctcaatggccaccgttttgtatccaaacgcaaaggaacaaacaattgctacaactacaaaga |
53229974 |
T |
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| Q |
131 |
atcaaataagaatcaaaaccccaaagaaaaacaaacgaggtagtaattgtaattacatatctaacccctctcagaattttgacacgtatgcaggtctatt |
230 |
Q |
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| T |
53229975 |
atcaaataagaatcaaaaccccaaagaaaaacaaacgaggtagtaattgtaattacatatctaacccctctcagaattttgacacgtatgcaggtctctt |
53230074 |
T |
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| Q |
231 |
gaatcttcctcaacagaaacaaccacctttgctac |
265 |
Q |
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| T |
53230075 |
gaatcttcctcaacagaaacaaccacctttgctac |
53230109 |
T |
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