View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1923_high_8 (Length: 208)
Name: NF1923_high_8
Description: NF1923
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1923_high_8 |
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Alignment Details
Target: chr3 (Bit Score: 173; Significance: 3e-93; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 173; E-Value: 3e-93
Query Start/End: Original strand, 14 - 194
Target Start/End: Original strand, 43053435 - 43053615
Alignment:
| Q |
14 |
atgaatgataagaattccaagtcctttgagctctcaaaggaagattttcctgttctttcaagcattggcaacagcagtttatcagcatctcatcaatctg |
113 |
Q |
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| T |
43053435 |
atgaatgataagaattccaagtcctttgagctctcaaaggaagattttcctgttctttcaagcattggcaacagcagtttgtcagcatctcatcaatctg |
43053534 |
T |
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| Q |
114 |
agcaggaccagaattcttcatcgcctcaaatatatatcgagtttggaacttacagtgcctcgaaatccctgaaagaactga |
194 |
Q |
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| T |
43053535 |
agcaggaccagaattcttcatcgcctcaaatatatatcgagtttggaacttacagtgcctcaaaatccctgaaagaactga |
43053615 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 169; E-Value: 8e-91
Query Start/End: Original strand, 14 - 194
Target Start/End: Original strand, 43037249 - 43037429
Alignment:
| Q |
14 |
atgaatgataagaattccaagtcctttgagctctcaaaggaagattttcctgttctttcaagcattggcaacagcagtttatcagcatctcatcaatctg |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
43037249 |
atgaatgataagaattccaagtcctttgagctctcaaaggaagattttcctgttctttcaagcattggcaacagcagtttgtcagcatctcatcaatctg |
43037348 |
T |
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| Q |
114 |
agcaggaccagaattcttcatcgcctcaaatatatatcgagtttggaacttacagtgcctcgaaatccctgaaagaactga |
194 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||| |
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| T |
43037349 |
agcaggaccagaattcttcatcgcctcaaatatatatcgagtttggaacttacagtgtctcaaaatccctgaaagaactga |
43037429 |
T |
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