View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1923_low_1 (Length: 833)

Name: NF1923_low_1
Description: NF1923
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1923_low_1
NF1923_low_1
[»] chr1 (7 HSPs)
chr1 (181-814)||(7651907-7652533)
chr1 (14-172)||(7651329-7651499)
chr1 (386-445)||(13054879-13054936)
chr1 (386-442)||(21400024-21400078)
chr1 (390-442)||(33153881-33153931)
chr1 (386-442)||(43611430-43611484)
chr1 (412-449)||(45652113-45652150)
[»] chr7 (12 HSPs)
chr7 (386-446)||(16577857-16577915)
chr7 (386-446)||(16587747-16587805)
chr7 (594-680)||(37923252-37923338)
chr7 (386-452)||(38553824-38553888)
chr7 (411-445)||(35165562-35165596)
chr7 (503-615)||(2401263-2401376)
chr7 (412-449)||(6768701-6768738)
chr7 (386-442)||(7872749-7872803)
chr7 (390-442)||(7994885-7994935)
chr7 (566-631)||(28080632-28080697)
chr7 (389-442)||(31533394-31533447)
chr7 (390-442)||(40187637-40187687)
[»] chr4 (12 HSPs)
chr4 (386-442)||(10564466-10564520)
chr4 (412-452)||(34968000-34968040)
chr4 (386-452)||(21623410-21623474)
chr4 (387-437)||(23160047-23160095)
chr4 (386-449)||(32139345-32139407)
chr4 (386-440)||(43539821-43539873)
chr4 (412-446)||(9783929-9783963)
chr4 (412-449)||(9990296-9990333)
chr4 (411-452)||(19124614-19124654)
chr4 (412-445)||(37735819-37735852)
chr4 (570-634)||(41037071-41037136)
chr4 (582-615)||(44249096-44249129)
[»] chr3 (7 HSPs)
chr3 (386-445)||(27185483-27185540)
chr3 (386-446)||(35863810-35863868)
chr3 (386-440)||(5117214-5117266)
chr3 (387-444)||(55494696-55494751)
chr3 (390-442)||(2186428-2186478)
chr3 (412-449)||(15507265-15507302)
chr3 (386-442)||(35191818-35191872)
[»] chr6 (8 HSPs)
chr6 (565-634)||(6542757-6542826)
chr6 (412-449)||(28592681-28592718)
chr6 (386-449)||(30639420-30639481)
chr6 (504-555)||(15082037-15082088)
chr6 (386-442)||(34828312-34828367)
chr6 (412-449)||(9333974-9334011)
chr6 (390-446)||(16390439-16390493)
chr6 (386-446)||(17151242-17151300)
[»] chr8 (6 HSPs)
chr8 (409-445)||(13032360-13032396)
chr8 (386-448)||(42208464-42208524)
chr8 (386-446)||(13575295-13575353)
chr8 (412-449)||(27044884-27044921)
chr8 (386-442)||(30623299-30623353)
chr8 (386-442)||(39821890-39821944)
[»] chr5 (8 HSPs)
chr5 (386-441)||(2705518-2705571)
chr5 (386-449)||(11017182-11017243)
chr5 (387-449)||(5195145-5195206)
chr5 (386-442)||(6489013-6489067)
chr5 (386-442)||(26409259-26409313)
chr5 (412-449)||(31708140-31708177)
chr5 (413-450)||(38031443-38031480)
chr5 (386-442)||(39143720-39143774)
[»] chr2 (7 HSPs)
chr2 (386-449)||(24393251-24393312)
chr2 (386-440)||(43826445-43826497)
chr2 (390-442)||(7640668-7640718)
chr2 (386-442)||(24592847-24592901)
chr2 (386-442)||(25274830-25274884)
chr2 (412-449)||(34903547-34903584)
chr2 (386-442)||(43117191-43117245)
[»] scaffold0118 (1 HSPs)
scaffold0118 (386-452)||(40004-40068)
[»] scaffold0045 (1 HSPs)
scaffold0045 (450-484)||(41189-41223)


Alignment Details
Target: chr1 (Bit Score: 471; Significance: 0; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 471; E-Value: 0
Query Start/End: Original strand, 181 - 814
Target Start/End: Original strand, 7651907 - 7652533
Alignment:
Q  181 atttaatgatgttgtaaaactattttagacgttattgcatatcggctaaacttaaaaatcaaatgagaacatcttacctcaatcattaaaaatgtcttat 280  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7651907 atttaatgatgttgtaaaactattttagacgttattgcatatcggctaaacttaaaaatcaaatgagaacatcttacctcaatcattaaaaatgtcttat 7652006  T
Q  281 gannnnnnnnnnnnnatggttcggtagtttaatacggagaagtggagaatttgaaatttaaactctaatctctgcatattaatgtaattcaaattttaag 380  Q
    ||             ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||| ||    
T  7652007 gatttttttt-----atggtccggtagtttaatacggagaagtggagaatttgaaatttaaactctaatctctgcatattaatgtacttaaaatttttag 7652101  T
Q  381 cttagttagctcagttggtagggacaatacacataatatatgtaaggtctgaggttcgaacctcggacatcaactacgatttctaagatggtatcaaagc 480  Q
    ||||||||| |||||||||| ||||||||||  ||||||||||||||||||| ||||||||||| |||| ||||||||||||||||||||||||||||||    
T  7652102 cttagttagttcagttggtatggacaataca--taatatatgtaaggtctgaagttcgaacctcagacaccaactacgatttctaagatggtatcaaagc 7652199  T
Q  481 ctctaccatttatcgagcttttgttatcggtccatccaccatttatgttcaggctccagatgtccagtcatgagcttcaggggggtgttaagagccttac 580  Q
    ||| |||||||||||||||||||||||||| ||||||||| |||||||||| |||| ||||||||| |||| ||||||||| |||||||||||| |||||    
T  7652200 ctccaccatttatcgagcttttgttatcgggccatccaccgtttatgttcacgctcaagatgtccaatcattagcttcaggagggtgttaagagtcttac 7652299  T
Q  581 gtcggataaaaggtggtctgacaatgtgtttataaatagggcaatcttcacctcctaaactaatttttgtgaaattgtattagatccaaccacgatttct 680  Q
     ||||||||||| |||||||||||||||||||||| |||||||||||||||||| ||| ||| |||||||| |||||||||||||||||||||  |||||    
T  7652300 atcggataaaagatggtctgacaatgtgtttataagtagggcaatcttcacctcataagctagtttttgtggaattgtattagatccaaccacactttct 7652399  T
Q  681 ctcaaaaattaccaattgagttgtatttacacatgatctcacgatgttttttaacctcatcttcatctacttgtcaaagaatgcaattttcttttgttag 780  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7652400 ctcaaaaattaccaattgagttgtatttacacatgatctcacgatgttttttaacctcatcttcatctacttgtcaaagaatgcaattttcttttgttag 7652499  T
Q  781 aaatttctttaatgtcatatattgaccggggctt 814  Q
    ||||||||||||||||||||||||||||||||||    
T  7652500 aaatttctttaatgtcatatattgaccggggctt 7652533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 105; E-Value: 5e-52
Query Start/End: Original strand, 14 - 172
Target Start/End: Original strand, 7651329 - 7651499
Alignment:
Q  14 gatgaagacaaaataggtgtcagcaaatagttgattg------------atggaaacatctataatgccacaagctgaagaacatgcatcaatgnnnnnn 101  Q
    |||||||||||||||||||||||||||||||||||||            |||||||||||||||||||||||||||||||||||||||||||||          
T  7651329 gatgaagacaaaataggtgtcagcaaatagttgattgcttgtgtgattgatggaaacatctataatgccacaagctgaagaacatgcatcaatgtttttt 7651428  T
Q  102 ncttcctttttctaaacataaaacttctattcgtagggttgatatacataataagaaactttatgtatgat 172  Q
     |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7651429 tcttcttttttctaaacataaaacttctattcgtagggttgatatacataataagaaactttatgtatgat 7651499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 386 - 445
Target Start/End: Original strand, 13054879 - 13054936
Alignment:
Q  386 ttagctcagttggtagggacaatacacataatatatgtaaggtctgaggttcgaacctcg 445  Q
    |||||| |||||||||||||||| ||  ||||||||| |||||| |||||||||||||||    
T  13054879 ttagcttagttggtagggacaatgca--taatatatgcaaggtcggaggttcgaacctcg 13054936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 386 - 442
Target Start/End: Complemental strand, 21400078 - 21400024
Alignment:
Q  386 ttagctcagttggtagggacaatacacataatatatgtaaggtctgaggttcgaacc 442  Q
    |||||||||||||||||||||||   ||||||||||| |||||||  ||||||||||    
T  21400078 ttagctcagttggtagggacaat--gcataatatatgcaaggtcttgggttcgaacc 21400024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 390 - 442
Target Start/End: Complemental strand, 33153931 - 33153881
Alignment:
Q  390 ctcagttggtagggacaatacacataatatatgtaaggtctgaggttcgaacc 442  Q
    ||||||||||||||||||| ||  |||||||||||||||| ||||||| ||||    
T  33153931 ctcagttggtagggacaatgca--taatatatgtaaggtccgaggttcaaacc 33153881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 386 - 442
Target Start/End: Original strand, 43611430 - 43611484
Alignment:
Q  386 ttagctcagttggtagggacaatacacataatatatgtaaggtctgaggttcgaacc 442  Q
    ||||||||||||||| |||||||  |||||||||||||||||| || ||||| ||||    
T  43611430 ttagctcagttggtatggacaat--acataatatatgtaaggtatggggttcaaacc 43611484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 412 - 449
Target Start/End: Complemental strand, 45652150 - 45652113
Alignment:
Q  412 cataatatatgtaaggtctgaggttcgaacctcggaca 449  Q
    |||||||||||||||||| |||||||||||||| ||||    
T  45652150 cataatatatgtaaggtccgaggttcgaacctcagaca 45652113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000005; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 386 - 446
Target Start/End: Complemental strand, 16577915 - 16577857
Alignment:
Q  386 ttagctcagttggtagggacaatacacataatatatgtaaggtctgaggttcgaacctcgg 446  Q
    |||||||||||||||||||||||  |||||||||||| |||||||| ||||| ||||||||    
T  16577915 ttagctcagttggtagggacaat--acataatatatgcaaggtctggggttcaaacctcgg 16577857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 386 - 446
Target Start/End: Original strand, 16587747 - 16587805
Alignment:
Q  386 ttagctcagttggtagggacaatacacataatatatgtaaggtctgaggttcgaacctcgg 446  Q
    |||||||||||||||||||||||  |||||||||||| |||||||| ||||| ||||||||    
T  16587747 ttagctcagttggtagggacaat--acataatatatgcaaggtctggggttcaaacctcgg 16587805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 594 - 680
Target Start/End: Complemental strand, 37923338 - 37923252
Alignment:
Q  594 tggtctgacaatgtgtttataaataggg-caatcttcacctcctaaactaatttttgtgaaattgtattagatccaaccacgatttct 680  Q
    |||||||||||||||||||||||||||| ||||| ||| |||  |||||   |||||||||| ||| ||||||| |||||||||||||    
T  37923338 tggtctgacaatgtgtttataaatagggacaatcatcatctcacaaact-ggttttgtgaaactgtgttagatctaaccacgatttct 37923252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 386 - 452
Target Start/End: Original strand, 38553824 - 38553888
Alignment:
Q  386 ttagctcagttggtagggacaatacacataatatatgtaaggtctgaggttcgaacctcggacatca 452  Q
    ||||||||||||||| | ||||| ||  ||||||||||||||| || ||||||||||||||||||||    
T  38553824 ttagctcagttggtaagaacaatgca--taatatatgtaaggtttggggttcgaacctcggacatca 38553888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 411 - 445
Target Start/End: Original strand, 35165562 - 35165596
Alignment:
Q  411 acataatatatgtaaggtctgaggttcgaacctcg 445  Q
    |||||||||||||||||||||||||||||||||||    
T  35165562 acataatatatgtaaggtctgaggttcgaacctcg 35165596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 503 - 615
Target Start/End: Original strand, 2401263 - 2401376
Alignment:
Q  503 gttatcggtccatccaccatttatgttcaggctccagatgtccagtcatgagcttcaggggggtgttaa-gagccttacgtcggataaaaggtggtctga 601  Q
    |||||||| ||| | ||||||||||| || | ||||||| ||||||| || |  | ||||| ||||||| |||  | || |||||||| ||| |||||||    
T  2401263 gttatcggaccaccgaccatttatgtccacgttccagatatccagtcctgggtatgaggggtgtgttaaagagtttcacatcggataagaggcggtctga 2401362  T
Q  602 caatgtgtttataa 615  Q
    ||||||||||||||    
T  2401363 caatgtgtttataa 2401376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 412 - 449
Target Start/End: Complemental strand, 6768738 - 6768701
Alignment:
Q  412 cataatatatgtaaggtctgaggttcgaacctcggaca 449  Q
    ||||||||||| ||||||||||||||||| ||||||||    
T  6768738 cataatatatgcaaggtctgaggttcgaatctcggaca 6768701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 386 - 442
Target Start/End: Complemental strand, 7872803 - 7872749
Alignment:
Q  386 ttagctcagttggtagggacaatacacataatatatgtaaggtctgaggttcgaacc 442  Q
    ||||||||||||||| ||||||| ||  ||||||||| |||||||| ||||||||||    
T  7872803 ttagctcagttggtaaggacaatgca--taatatatgcaaggtctggggttcgaacc 7872749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 390 - 442
Target Start/End: Complemental strand, 7994935 - 7994885
Alignment:
Q  390 ctcagttggtagggacaatacacataatatatgtaaggtctgaggttcgaacc 442  Q
    |||||||||||||||||| |||  |||||||||||||||||| ||||| ||||    
T  7994935 ctcagttggtagggacaaaaca--taatatatgtaaggtctggggttcaaacc 7994885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 566 - 631
Target Start/End: Original strand, 28080632 - 28080697
Alignment:
Q  566 tgttaagagccttacgtcggataaaaggtggtctgacaatgtgtttataaatagggcaatcttcac 631  Q
    ||||||||| || || |||||||| || ||  |||||||||||||||||| ||||||||| |||||    
T  28080632 tgttaagagtctcacatcggataagagatgacctgacaatgtgtttataagtagggcaattttcac 28080697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 389 - 442
Target Start/End: Complemental strand, 31533447 - 31533394
Alignment:
Q  389 gctcagttggtagggacaatacacataatatatgtaaggtctgaggttcgaacc 442  Q
    ||||||||| || |||||||| |||||||||||| ||||| || ||||||||||    
T  31533447 gctcagttgataaggacaatatacataatatatgcaaggtttggggttcgaacc 31533394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 390 - 442
Target Start/End: Complemental strand, 40187687 - 40187637
Alignment:
Q  390 ctcagttggtagggacaatacacataatatatgtaaggtctgaggttcgaacc 442  Q
    ||||||||||||||||||| ||  |||||||||||||||||| ||||| ||||    
T  40187687 ctcagttggtagggacaatgca--taatatatgtaaggtctgcggttcaaacc 40187637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000005; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 386 - 442
Target Start/End: Complemental strand, 10564520 - 10564466
Alignment:
Q  386 ttagctcagttggtagggacaatacacataatatatgtaaggtctgaggttcgaacc 442  Q
    ||||||||||||||| ||||||||||  |||||||||||||||||||||||| ||||    
T  10564520 ttagctcagttggtatggacaataca--taatatatgtaaggtctgaggttcaaacc 10564466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 412 - 452
Target Start/End: Complemental strand, 34968040 - 34968000
Alignment:
Q  412 cataatatatgtaaggtctgaggttcgaacctcggacatca 452  Q
    ||||||||||||||||| ||||||||||||||||| |||||    
T  34968040 cataatatatgtaaggtttgaggttcgaacctcggccatca 34968000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 386 - 452
Target Start/End: Complemental strand, 21623474 - 21623410
Alignment:
Q  386 ttagctcagttggtagggacaatacacataatatatgtaaggtctgaggttcgaacctcggacatca 452  Q
    |||| |||||||||||||||||| ||  ||||||||| |||||||||||||  |||||||| |||||    
T  21623474 ttagttcagttggtagggacaatgca--taatatatgcaaggtctgaggtttaaacctcggccatca 21623410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 387 - 437
Target Start/End: Original strand, 23160047 - 23160095
Alignment:
Q  387 tagctcagttggtagggacaatacacataatatatgtaaggtctgaggttc 437  Q
    ||||||||||||||||||||||   |||||||||||||||||| |||||||    
T  23160047 tagctcagttggtagggacaat--gcataatatatgtaaggtccgaggttc 23160095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 386 - 449
Target Start/End: Original strand, 32139345 - 32139407
Alignment:
Q  386 ttagctcagttggtagggacaatacacataatatatgtaaggtctgaggttcgaacctcggaca 449  Q
    |||||||||||| ||||||||||||| | |||||||| |||||| | |||||||||| ||||||    
T  32139345 ttagctcagttgatagggacaatacata-aatatatgcaaggtccggggttcgaaccccggaca 32139407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 386 - 440
Target Start/End: Original strand, 43539821 - 43539873
Alignment:
Q  386 ttagctcagttggtagggacaatacacataatatatgtaaggtctgaggttcgaa 440  Q
    |||| ||||||||||||||||||  |||||||||||||| || ||||||||||||    
T  43539821 ttagttcagttggtagggacaat--acataatatatgtaggggctgaggttcgaa 43539873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 412 - 446
Target Start/End: Original strand, 9783929 - 9783963
Alignment:
Q  412 cataatatatgtaaggtctgaggttcgaacctcgg 446  Q
    |||||||||||||||||||||||||| ||||||||    
T  9783929 cataatatatgtaaggtctgaggttcaaacctcgg 9783963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 412 - 449
Target Start/End: Original strand, 9990296 - 9990333
Alignment:
Q  412 cataatatatgtaaggtctgaggttcgaacctcggaca 449  Q
    ||||||||||| ||| ||||||||||||||||||||||    
T  9990296 cataatatatgcaagatctgaggttcgaacctcggaca 9990333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 411 - 452
Target Start/End: Complemental strand, 19124654 - 19124614
Alignment:
Q  411 acataatatatgtaaggtctgaggttcgaacctcggacatca 452  Q
    |||||||||||| ||||||||||||||||||| |||||||||    
T  19124654 acataatatatgcaaggtctgaggttcgaacc-cggacatca 19124614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 412 - 445
Target Start/End: Original strand, 37735819 - 37735852
Alignment:
Q  412 cataatatatgtaaggtctgaggttcgaacctcg 445  Q
    |||||||||||||||||||||||||| |||||||    
T  37735819 cataatatatgtaaggtctgaggttcaaacctcg 37735852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 570 - 634
Target Start/End: Complemental strand, 41037136 - 41037071
Alignment:
Q  570 aagagccttacgtcggataaaaggtggtctgacaatgtgtttataaataggg-caatcttcacctc 634  Q
    ||||| ||||| ||||||||||| | |||||||| ||||||||||||  ||| |||||||||||||    
T  41037136 aagagtcttacatcggataaaagatagtctgacagtgtgtttataaacggggacaatcttcacctc 41037071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 582 - 615
Target Start/End: Original strand, 44249096 - 44249129
Alignment:
Q  582 tcggataaaaggtggtctgacaatgtgtttataa 615  Q
    ||||||||||| ||||||||||||||||||||||    
T  44249096 tcggataaaagatggtctgacaatgtgtttataa 44249129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.00000000002; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 386 - 445
Target Start/End: Original strand, 27185483 - 27185540
Alignment:
Q  386 ttagctcagttggtagggacaatacacataatatatgtaaggtctgaggttcgaacctcg 445  Q
    |||||||||||||||||||||||  |||||||||||| |||||||| ||||| |||||||    
T  27185483 ttagctcagttggtagggacaat--acataatatatgcaaggtctggggttcaaacctcg 27185540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 386 - 446
Target Start/End: Complemental strand, 35863868 - 35863810
Alignment:
Q  386 ttagctcagttggtagggacaatacacataatatatgtaaggtctgaggttcgaacctcgg 446  Q
    ||||||||||||||| ||||||||||  ||||||||| |||||||| ||||| ||||||||    
T  35863868 ttagctcagttggtaaggacaataca--taatatatgcaaggtctggggttcaaacctcgg 35863810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 386 - 440
Target Start/End: Original strand, 5117214 - 5117266
Alignment:
Q  386 ttagctcagttggtagggacaatacacataatatatgtaaggtctgaggttcgaa 440  Q
    |||||||||||| || ||||||||||  ||||||||||||||| |||||||||||    
T  5117214 ttagctcagttgataaggacaataca--taatatatgtaaggtttgaggttcgaa 5117266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 387 - 444
Target Start/End: Original strand, 55494696 - 55494751
Alignment:
Q  387 tagctcagttggtagggacaatacacataatatatgtaaggtctgaggttcgaacctc 444  Q
    ||||||| |||||||||||||| ||  |||||||||||||| ||| ||||||||||||    
T  55494696 tagctcaattggtagggacaatgca--taatatatgtaaggactggggttcgaacctc 55494751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 390 - 442
Target Start/End: Complemental strand, 2186478 - 2186428
Alignment:
Q  390 ctcagttggtagggacaatacacataatatatgtaaggtctgaggttcgaacc 442  Q
    ||||||||||| ||||||||||  |||||||||||||||||| ||||| ||||    
T  2186478 ctcagttggtatggacaataca--taatatatgtaaggtctggggttcaaacc 2186428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 412 - 449
Target Start/End: Complemental strand, 15507302 - 15507265
Alignment:
Q  412 cataatatatgtaaggtctgaggttcgaacctcggaca 449  Q
    ||||||||||||||||||||||||||||| | ||||||    
T  15507302 cataatatatgtaaggtctgaggttcgaatcccggaca 15507265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 386 - 442
Target Start/End: Complemental strand, 35191872 - 35191818
Alignment:
Q  386 ttagctcagttggtagggacaatacacataatatatgtaaggtctgaggttcgaacc 442  Q
    ||||||||||||||| ||||||| ||  ||||||||| |||||||| ||||||||||    
T  35191872 ttagctcagttggtaaggacaatgca--taatatatgcaaggtctggggttcgaacc 35191818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.000000001; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 565 - 634
Target Start/End: Complemental strand, 6542826 - 6542757
Alignment:
Q  565 gtgttaagagccttacgtcggataaaaggtggtctgacaatgtgtttataaatagggcaatcttcacctc 634  Q
    |||||||||| || || |||||||  || |||||||||||| ||||||||||| |||||||| |||||||    
T  6542826 gtgttaagagtctcacatcggataggagatggtctgacaatctgtttataaatggggcaatcatcacctc 6542757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 412 - 449
Target Start/End: Complemental strand, 28592718 - 28592681
Alignment:
Q  412 cataatatatgtaaggtctgaggttcgaacctcggaca 449  Q
    |||||||||||||||||||| |||||||||||||||||    
T  28592718 cataatatatgtaaggtctggggttcgaacctcggaca 28592681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 386 - 449
Target Start/End: Complemental strand, 30639481 - 30639420
Alignment:
Q  386 ttagctcagttggtagggacaatacacataatatatgtaaggtctgaggttcgaacctcggaca 449  Q
    ||||||||||||||||| | ||| ||  ||||||||| ||||||||||||||||| ||||||||    
T  30639481 ttagctcagttggtaggaataatgca--taatatatgcaaggtctgaggttcgaatctcggaca 30639420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 504 - 555
Target Start/End: Complemental strand, 15082088 - 15082037
Alignment:
Q  504 ttatcggtccatccaccatttatgttcaggctccagatgtccagtcatgagc 555  Q
    ||||||| ||| |||||||||||||||| ||| ||||||||||||| |||||    
T  15082088 ttatcgggccacccaccatttatgttcacgcttcagatgtccagtcttgagc 15082037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 386 - 442
Target Start/End: Original strand, 34828312 - 34828367
Alignment:
Q  386 ttagctcagttggtagggacaatacacataata-tatgtaaggtctgaggttcgaacc 442  Q
    ||||||||||||||| ||||||| ||  ||||| ||||||||||||||||||||||||    
T  34828312 ttagctcagttggtatggacaatgca--taataatatgtaaggtctgaggttcgaacc 34828367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 412 - 449
Target Start/End: Complemental strand, 9334011 - 9333974
Alignment:
Q  412 cataatatatgtaaggtctgaggttcgaacctcggaca 449  Q
    ||||||||||||||||| || |||||||||||||||||    
T  9334011 cataatatatgtaaggtttggggttcgaacctcggaca 9333974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 390 - 446
Target Start/End: Original strand, 16390439 - 16390493
Alignment:
Q  390 ctcagttggtagggacaatacacataatatatgtaaggtctgaggttcgaacctcgg 446  Q
    ||||||||||||||||||| ||  |||||||||||||||| | ||||| ||||||||    
T  16390439 ctcagttggtagggacaatgca--taatatatgtaaggtccggggttcaaacctcgg 16390493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 386 - 446
Target Start/End: Original strand, 17151242 - 17151300
Alignment:
Q  386 ttagctcagttggtagggacaatacacataatatatgtaaggtctgaggttcgaacctcgg 446  Q
    |||||| ||||||||| |||||||||  ||||||||| |||||||| ||||| ||||||||    
T  17151242 ttagctaagttggtagtgacaataca--taatatatgcaaggtctggggttcaaacctcgg 17151300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000005; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 409 - 445
Target Start/End: Complemental strand, 13032396 - 13032360
Alignment:
Q  409 acacataatatatgtaaggtctgaggttcgaacctcg 445  Q
    |||||||||||||| ||||||||||||||||||||||    
T  13032396 acacataatatatgcaaggtctgaggttcgaacctcg 13032360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 386 - 448
Target Start/End: Complemental strand, 42208524 - 42208464
Alignment:
Q  386 ttagctcagttggtagggacaatacacataatatatgtaaggtctgaggttcgaacctcggac 448  Q
    ||||||||||||||| ||||||| ||  ||||||||| |||||| ||||||| ||||||||||    
T  42208524 ttagctcagttggtaaggacaatgca--taatatatgcaaggtccgaggttcaaacctcggac 42208464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 386 - 446
Target Start/End: Original strand, 13575295 - 13575353
Alignment:
Q  386 ttagctcagttggtagggacaatacacataatatatgtaaggtctgaggttcgaacctcgg 446  Q
    |||||||||||||||||||||||   ||||| ||||| ||| || ||||||||||||||||    
T  13575295 ttagctcagttggtagggacaat--gcataacatatgcaagttccgaggttcgaacctcgg 13575353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 412 - 449
Target Start/End: Complemental strand, 27044921 - 27044884
Alignment:
Q  412 cataatatatgtaaggtctgaggttcgaacctcggaca 449  Q
    |||||||||||||||||||||||||| |||| ||||||    
T  27044921 cataatatatgtaaggtctgaggttcaaaccccggaca 27044884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 386 - 442
Target Start/End: Original strand, 30623299 - 30623353
Alignment:
Q  386 ttagctcagttggtagggacaatacacataatatatgtaaggtctgaggttcgaacc 442  Q
    ||||||||||||||| ||||||| ||  ||||||||| |||||||| ||||||||||    
T  30623299 ttagctcagttggtaaggacaatgca--taatatatgcaaggtctggggttcgaacc 30623353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 386 - 442
Target Start/End: Original strand, 39821890 - 39821944
Alignment:
Q  386 ttagctcagttggtagggacaatacacataatatatgtaaggtctgaggttcgaacc 442  Q
    |||||||||||||||||||||||   ||||||||||| |||||||| ||||| ||||    
T  39821890 ttagctcagttggtagggacaat--gcataatatatgcaaggtctggggttcaaacc 39821944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000005; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 386 - 441
Target Start/End: Complemental strand, 2705571 - 2705518
Alignment:
Q  386 ttagctcagttggtagggacaatacacataatatatgtaaggtctgaggttcgaac 441  Q
    |||||||||||| || | ||||||||  ||||||||||||||||||||||||||||    
T  2705571 ttagctcagttgataagaacaataca--taatatatgtaaggtctgaggttcgaac 2705518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 386 - 449
Target Start/End: Original strand, 11017182 - 11017243
Alignment:
Q  386 ttagctcagttggtagggacaatacacataatatatgtaaggtctgaggttcgaacctcggaca 449  Q
    ||||||||||||||||||| ||| ||  ||||||||| ||||||||||||||||| | ||||||    
T  11017182 ttagctcagttggtagggataatgca--taatatatgcaaggtctgaggttcgaatcccggaca 11017243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 387 - 449
Target Start/End: Complemental strand, 5195206 - 5195145
Alignment:
Q  387 tagctcagttggtagggacaatacacataatatatgtaaggtctgaggttcgaacctcggaca 449  Q
    ||||||||||||||| ||||| || ||||||||||||| ||  ||||||||||||||| ||||    
T  5195206 tagctcagttggtagagacaa-acgcataatatatgtaggggttgaggttcgaacctcagaca 5195145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 386 - 442
Target Start/End: Original strand, 6489013 - 6489067
Alignment:
Q  386 ttagctcagttggtagggacaatacacataatatatgtaaggtctgaggttcgaacc 442  Q
    |||||||||||||||||||||||   ||||||||||| |||||||| ||||| ||||    
T  6489013 ttagctcagttggtagggacaat--gcataatatatgcaaggtctggggttcaaacc 6489067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 386 - 442
Target Start/End: Original strand, 26409259 - 26409313
Alignment:
Q  386 ttagctcagttggtagggacaatacacataatatatgtaaggtctgaggttcgaacc 442  Q
    ||||||||||||||| ||||||| ||  |||||||||||||||| | ||||||||||    
T  26409259 ttagctcagttggtatggacaatgca--taatatatgtaaggtccggggttcgaacc 26409313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 412 - 449
Target Start/End: Complemental strand, 31708177 - 31708140
Alignment:
Q  412 cataatatatgtaaggtctgaggttcgaacctcggaca 449  Q
    ||||||||||| |||||||| |||||||||||||||||    
T  31708177 cataatatatgcaaggtctggggttcgaacctcggaca 31708140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 413 - 450
Target Start/End: Original strand, 38031443 - 38031480
Alignment:
Q  413 ataatatatgtaaggtctgaggttcgaacctcggacat 450  Q
    ||||||||||||||||||||||||||||  ||||||||    
T  38031443 ataatatatgtaaggtctgaggttcgaatttcggacat 38031480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 386 - 442
Target Start/End: Original strand, 39143720 - 39143774
Alignment:
Q  386 ttagctcagttggtagggacaatacacataatatatgtaaggtctgaggttcgaacc 442  Q
    ||||||||||||||| ||||| | ||  ||||||||||||||| |||||||||||||    
T  39143720 ttagctcagttggtatggacattgca--taatatatgtaaggtttgaggttcgaacc 39143774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000005; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 386 - 449
Target Start/End: Original strand, 24393251 - 24393312
Alignment:
Q  386 ttagctcagttggtagggacaatacacataatatatgtaaggtctgaggttcgaacctcggaca 449  Q
    |||||||||||| || ||||||| ||  ||||||||| ||||||||||||||||||| ||||||    
T  24393251 ttagctcagttgttaaggacaatgca--taatatatgcaaggtctgaggttcgaaccccggaca 24393312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 386 - 440
Target Start/End: Complemental strand, 43826497 - 43826445
Alignment:
Q  386 ttagctcagttggtagggacaatacacataatatatgtaaggtctgaggttcgaa 440  Q
    ||||||||||||||| ||||||||||  ||||||||||||||| ||| |||||||    
T  43826497 ttagctcagttggtaaggacaataca--taatatatgtaaggtatgatgttcgaa 43826445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 390 - 442
Target Start/End: Original strand, 7640668 - 7640718
Alignment:
Q  390 ctcagttggtagggacaatacacataatatatgtaaggtctgaggttcgaacc 442  Q
    |||| |||||| ||||||||||  |||||||||||||| ||||||||||||||    
T  7640668 ctcaattggtaaggacaataca--taatatatgtaaggcctgaggttcgaacc 7640718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 386 - 442
Target Start/End: Complemental strand, 24592901 - 24592847
Alignment:
Q  386 ttagctcagttggtagggacaatacacataatatatgtaaggtctgaggttcgaacc 442  Q
    |||||||||||||||||||||||   ||||||||||| |||||||| ||||| ||||    
T  24592901 ttagctcagttggtagggacaat--gcataatatatgcaaggtctggggttcaaacc 24592847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 386 - 442
Target Start/End: Complemental strand, 25274884 - 25274830
Alignment:
Q  386 ttagctcagttggtagggacaatacacataatatatgtaaggtctgaggttcgaacc 442  Q
    ||||||||||||||| | ||||| ||  |||||||||||||||||| ||||||||||    
T  25274884 ttagctcagttggtaagaacaatgca--taatatatgtaaggtctggggttcgaacc 25274830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 412 - 449
Target Start/End: Original strand, 34903547 - 34903584
Alignment:
Q  412 cataatatatgtaaggtctgaggttcgaacctcggaca 449  Q
    ||||||||||| ||||||||||||||||||| ||||||    
T  34903547 cataatatatgcaaggtctgaggttcgaaccccggaca 34903584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 386 - 442
Target Start/End: Complemental strand, 43117245 - 43117191
Alignment:
Q  386 ttagctcagttggtagggacaatacacataatatatgtaaggtctgaggttcgaacc 442  Q
    ||||||||||||||| ||||||| ||  ||||||||| |||||||||||||| ||||    
T  43117245 ttagctcagttggtaaggacaatgca--taatatatgcaaggtctgaggttcaaacc 43117191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0118 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0118
Description:

Target: scaffold0118; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 386 - 452
Target Start/End: Original strand, 40004 - 40068
Alignment:
Q  386 ttagctcagttggtagggacaatacacataatatatgtaaggtctgaggttcgaacctcggacatca 452  Q
    ||||||||||||||| ||||||| ||  ||||||||| |||||  ||||||| ||||||||||||||    
T  40004 ttagctcagttggtatggacaatgca--taatatatgcaaggttagaggttcaaacctcggacatca 40068  T

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Target: scaffold0045 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 450 - 484
Target Start/End: Complemental strand, 41223 - 41189
Alignment:
Q  450 tcaactacgatttctaagatggtatcaaagcctct 484  Q
    ||||||||||||||||||||||||||| |||||||    
T  41223 tcaactacgatttctaagatggtatcagagcctct 41189  T

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