View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1923_low_2 (Length: 645)
Name: NF1923_low_2
Description: NF1923
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1923_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 265; Significance: 1e-147; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 265; E-Value: 1e-147
Query Start/End: Original strand, 349 - 629
Target Start/End: Complemental strand, 1483148 - 1482868
Alignment:
| Q |
349 |
tcacaatggacatcatgcctagcaactcccagaaacccctaacccttaaaacctacacactaatttggttcaatgcacattttacccagcaactcccaaa |
448 |
Q |
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| T |
1483148 |
tcacaatggacatcatgcctagcaactcccagaaacccctaatccttaaatcctacacactaatttggttcaatgcacattttacccagcaactccctaa |
1483049 |
T |
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| Q |
449 |
aaccattagctgaccatgcatacacctacactttctttccacgcttcctctcaaataaaaattatcaagtaatatagaagaatatattatatcaaagaaa |
548 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
1483048 |
aaccattagctgaccatgcatacacctacactttctttccacgcttcctctcaaataaaaattatcaagtaatatagaagaatatattatatcaaacaaa |
1482949 |
T |
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| Q |
549 |
gagtcatggtgaattccaaacaatttgattaagagaaaagaaacaggtgtcattcaattcaaaattatagtcatacattgt |
629 |
Q |
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| T |
1482948 |
gagtcatggtgaattccaaacaatttgattaagagaaaagaaacaggtgtcattcaattcaaaattatagtcatacattgt |
1482868 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 12 - 305
Target Start/End: Complemental strand, 1483450 - 1483148
Alignment:
| Q |
12 |
tcatcatgttcaaatgaggctagattggagaaggtgatcatacattcaagcaagaaacaatttttg---------acaattttctgttaaaacaataatg |
102 |
Q |
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| T |
1483450 |
tcatcatgttcaaatgaggctagattggagaaggtgatcatacatttaagcaagaaacaatttttgcttcaatgtacaattttctgttaaaacaataata |
1483351 |
T |
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| Q |
103 |
tgatcaaatacttcaaattataaaatcatcatagaatgatggtgcaaggaaaaatttaaaatgtttacaactgtaatcttcaagtggaagttaagcttct |
202 |
Q |
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| T |
1483350 |
tgatcaaatacttcaaattataaaatcatcatagaatgatggtgcaaggaaaaatttaaaatgtttacaactgtaatcttcaagtggaagttaagcttct |
1483251 |
T |
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| Q |
203 |
tcaaaaaagagtagaagattaagcaaacaggnnnnnnnngtttgaggcctgttgtggaaattgattgcaaatatgcactcagctgaaacttatttgcttc |
302 |
Q |
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| T |
1483250 |
ttaaaaaagagtagaagattaagcaaacaggaaaaaaaagtttgaggcctgttgtggaaattgattgcacatatgcactcagctgaaacttatttgcttc |
1483151 |
T |
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| Q |
303 |
tct |
305 |
Q |
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||| |
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| T |
1483150 |
tct |
1483148 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 249 - 629
Target Start/End: Complemental strand, 36717980 - 36717601
Alignment:
| Q |
249 |
gcctgttgtggaaattgattgcaaatatgcactcagctgaaacttatttgcttctctttaaatcaagtttaccccccaaatttctacacactaatttgat |
348 |
Q |
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| T |
36717980 |
gcctgttgtggaaattgattgaatatttgtactcagctgaaacatttttgcttctctttaaatcaagtttaccccc-aaattcctacacactagtttgat |
36717882 |
T |
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| Q |
349 |
tcacaatggacatcatgcctagcaactcccagaaacccctaacccttaaaacctacacactaatttggttcaatgcacattttacccagcaactcccaaa |
448 |
Q |
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|||||||||||||||||| ||||| ||||| |||||||| | |||| |||||| |||||||| |||||||||||||||| |
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| T |
36717881 |
--------------------agcaactcccagaaacccttaacc-ttaaatcctacacattggtttgattcaatacacattttgcccagcaactcccaaa |
36717803 |
T |
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| Q |
449 |
aaccattagctgaccatgcatacac--ctacactttctttccacgcttcctctca-------------------aataaaaattatcaagtaatatagaa |
527 |
Q |
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|||| ||| | ||||||||||||| |||||||||| ||||||||||||||||| || ||||| ||||||||||| |||| |
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| T |
36717802 |
aacccttacccaaccatgcatacacagctacactttccttccacgcttcctctcagaaagagaaaaaaaaaaaaaaaaaaaacaatcaagtaatagagaa |
36717703 |
T |
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| Q |
528 |
gaatatattatatcaaagaaagagtcatggtgaattccaaacaatttgattaagagaaaagaaacaggtgtcattcaattcaaaattatagtcatacatt |
627 |
Q |
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| T |
36717702 |
ccatatatcttatcaaacaaagaatcatggtgaattccaaacaatttgattaagagaaaagaaataggtgtcattcgattcaaaactatagtcatacatt |
36717603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 124 - 192
Target Start/End: Complemental strand, 36717567 - 36717499
Alignment:
| Q |
124 |
aaaatcatcatagaatgatggtgcaaggaaaaatttaaaatgtttacaactgtaatcttcaagtggaag |
192 |
Q |
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|||||||||| ||||||||| ||||||||||||| |||||||| |||| || |||||||||||| |||| |
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| T |
36717567 |
aaaatcatcaaagaatgatgatgcaaggaaaaatctaaaatgtatacagctataatcttcaagtagaag |
36717499 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 124 - 186
Target Start/End: Complemental strand, 1482834 - 1482772
Alignment:
| Q |
124 |
aaaatcatcatagaatgatggtgcaaggaaaaatttaaaatgtttacaactgtaatcttcaag |
186 |
Q |
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|||||||||| |||||| || ||||||||||||| |||||||| |||| || ||||||||||| |
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| T |
1482834 |
aaaatcatcaaagaatggtgatgcaaggaaaaatctaaaatgtatacagctttaatcttcaag |
1482772 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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