View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1923_low_3 (Length: 533)
Name: NF1923_low_3
Description: NF1923
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1923_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 395; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 111 - 517
Target Start/End: Complemental strand, 4418718 - 4418312
Alignment:
| Q |
111 |
ttggcctacttgtttaatcataaaacaaaagtccaggcaaatgtttggtgaatattgaaaattaaaagcatgtcattccaaatgaaaggataatgttaaa |
210 |
Q |
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| T |
4418718 |
ttggcctacttgtttaatcataaaataaaagtccaggcaaatgtttggtgaatattgaaaattaaaagcatgtcattccaaatgaaaggatgatgttaaa |
4418619 |
T |
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| Q |
211 |
gccggaataagaagagttacgacaaaaaccatgaaaagttgtatatacatttttgtaatttagttaatgtgttagtgtggtagggtagtaggtttgtagg |
310 |
Q |
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| T |
4418618 |
gccggaataagaagagttacgacaaaaaccatgaaaagttgtatatacatttttgtaatttagttaatgtgttagtgtggtagggtagtaggtttgtagg |
4418519 |
T |
|
| Q |
311 |
gactaatgtcttgtatagatcaaaaacatgcattttgttaaatgcatctgctttattacaggagagcagtttatattctaaagcagacaattagattcat |
410 |
Q |
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| T |
4418518 |
gactaatgtcttgtatagatcaaaaacatgcattttgttaaatgcatctgctttattacaggagagcagtttatattctaaagcagacaattagattcat |
4418419 |
T |
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| Q |
411 |
tggtcggttttttgtcacattcattgggtccattttcttcgaccgtatcaagtcatataggaattgaatcacctaaaccaagtctccatccccataccaa |
510 |
Q |
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| T |
4418418 |
tggtcggttttttgtcacattcattgggtccattttcttcgaccgtatcaagtcatataggaattgaatcacctaaaccaagtctccatcaccataccaa |
4418319 |
T |
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| Q |
511 |
caatttg |
517 |
Q |
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| T |
4418318 |
caatttg |
4418312 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 16 - 66
Target Start/End: Complemental strand, 4418813 - 4418763
Alignment:
| Q |
16 |
atgaacttgaggtttttcaaataaacactagtagacactaggaagctactc |
66 |
Q |
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| T |
4418813 |
atgaacttgaggtttttcaaataaacactagtagacactaggaagctactc |
4418763 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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