View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1923_low_4 (Length: 495)

Name: NF1923_low_4
Description: NF1923
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1923_low_4
NF1923_low_4
[»] chr6 (13 HSPs)
chr6 (158-372)||(9075084-9075298)
chr6 (20-109)||(9074945-9075034)
chr6 (377-490)||(9075237-9075350)
chr6 (287-370)||(9074073-9074156)
chr6 (274-319)||(9194420-9194465)
chr6 (375-430)||(9074079-9074134)
chr6 (287-352)||(30003249-30003314)
chr6 (274-366)||(33532432-33532524)
chr6 (280-370)||(1912443-1912533)
chr6 (409-451)||(5730118-5730160)
chr6 (267-332)||(19390965-19391030)
chr6 (290-335)||(24812534-24812579)
chr6 (286-334)||(3784911-3784959)
[»] chr7 (10 HSPs)
chr7 (288-366)||(48517386-48517464)
chr7 (280-372)||(2219461-2219552)
chr7 (267-364)||(18749198-18749297)
chr7 (288-368)||(23117298-23117378)
chr7 (280-365)||(24673366-24673451)
chr7 (379-432)||(31809136-31809189)
chr7 (403-451)||(2219448-2219496)
chr7 (375-431)||(24673366-24673422)
chr7 (408-452)||(27720473-27720517)
chr7 (274-370)||(32612398-32612494)
[»] chr1 (7 HSPs)
chr1 (267-334)||(6025943-6026010)
chr1 (378-452)||(12764631-12764706)
chr1 (273-359)||(8856780-8856866)
chr1 (378-432)||(46937627-46937681)
chr1 (286-331)||(17204675-17204720)
chr1 (380-431)||(3234585-3234636)
chr1 (253-367)||(24808356-24808470)
[»] chr8 (7 HSPs)
chr8 (388-452)||(11813980-11814044)
chr8 (253-335)||(45371070-45371152)
chr8 (285-334)||(16690945-16690994)
chr8 (266-368)||(42822605-42822707)
chr8 (382-430)||(4050512-4050560)
chr8 (274-334)||(21226953-21227013)
chr8 (285-365)||(41686218-41686298)
[»] chr5 (11 HSPs)
chr5 (290-373)||(5987329-5987412)
chr5 (280-330)||(22532590-22532640)
chr5 (280-357)||(4787946-4788023)
chr5 (267-328)||(5516022-5516083)
chr5 (272-368)||(6586544-6586640)
chr5 (387-431)||(42440170-42440214)
chr5 (311-365)||(9634890-9634944)
chr5 (388-454)||(13898736-13898802)
chr5 (296-370)||(42440145-42440219)
chr5 (406-451)||(29466272-29466317)
chr5 (375-420)||(34556526-34556571)
[»] chr4 (7 HSPs)
chr4 (274-333)||(34581607-34581666)
chr4 (268-329)||(4762529-4762590)
chr4 (285-357)||(4683769-4683841)
chr4 (292-330)||(3304270-3304308)
chr4 (275-329)||(13256204-13256258)
chr4 (285-326)||(682009-682050)
chr4 (285-366)||(42647417-42647498)
[»] chr3 (8 HSPs)
chr3 (280-367)||(24830171-24830258)
chr3 (253-330)||(50402630-50402707)
chr3 (253-356)||(7877781-7877884)
chr3 (280-322)||(8788959-8789001)
chr3 (285-330)||(43307604-43307649)
chr3 (290-335)||(43307667-43307712)
chr3 (285-358)||(54838621-54838694)
chr3 (295-327)||(402793-402825)
[»] chr2 (4 HSPs)
chr2 (384-431)||(17505001-17505048)
chr2 (274-335)||(36300410-36300474)
chr2 (274-311)||(24097778-24097815)
chr2 (407-452)||(29378606-29378651)


Alignment Details
Target: chr6 (Bit Score: 203; Significance: 1e-110; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 203; E-Value: 1e-110
Query Start/End: Original strand, 158 - 372
Target Start/End: Original strand, 9075084 - 9075298
Alignment:
158 tgacactgaatacagatgaaacataaatatataaagtgtaagacaaatgagtcaagttggctatatggatcaatcaatggttactaggctctttcacaaa 257  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
9075084 tgacactgaatacagatgaaacataaatatataaagtgtaagacaaatgactcaagttggctatatggatcaatcaatggttactaggctctttcacaaa 9075183  T
258 tcactaattttccgcaatacggtattaagtacaaaatgttgtcaaatagaggttatagcggcgctatagcactgttgtctaacggaatgtgaacaaaccg 357  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||     
9075184 tcactaattttccgcaatacggtattaagtacaaaatgttgtcaaatagaggttatagcggcgctatagcactgttgtataacggaatgtgaacaaacca 9075283  T
358 ctgttttccgcgacc 372  Q
    |||||||||||||||    
9075284 ctgttttccgcgacc 9075298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 20 - 109
Target Start/End: Original strand, 9074945 - 9075034
Alignment:
20 agttgcaggttccaataagcatccaaagaggttgaacaagtcactgcataaataaaataaattgaatcaaatgtttgatgtatgaggttg 109  Q
    |||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||| |||||    
9074945 agttgcaggttccaataagcatccaaagaggttgaacaagtcactgtaaaaataaaataaattgaatcaaatgtttgatgtatgtggttg 9075034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 377 - 490
Target Start/End: Original strand, 9075237 - 9075350
Alignment:
377 tatagtggcactataacactgttgtataacggaatttgaacaaaccactgttttccacgacccgcgattgacaacatttatcaatcactatcttagagta 476  Q
    ||||| ||| ||||| ||||||||||||||||||| |||||||||||||||||||| ||||||| |||||||||||| || |||||||||||||||||||    
9075237 tatagcggcgctatagcactgttgtataacggaatgtgaacaaaccactgttttccgcgacccgtgattgacaacatgtaacaatcactatcttagagta 9075336  T
477 tttttcatctcact 490  Q
    |||||||| |||||    
9075337 tttttcatatcact 9075350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 287 - 370
Target Start/End: Complemental strand, 9074156 - 9074073
Alignment:
287 tacaaaatgttgtcaaatagaggttatagcggcgctatagcactgttgtctaacggaatgtgaacaaaccgctgttttccgcga 370  Q
    ||||||||||| ||||||||||| ||||||||||||||||||||||||| ||| ||||| |||||||| | ||||||| |||||    
9074156 tacaaaatgttatcaaatagaggctatagcggcgctatagcactgttgtataatggaatttgaacaaaacactgtttttcgcga 9074073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 274 - 319
Target Start/End: Complemental strand, 9194465 - 9194420
Alignment:
274 atacggtattaagtacaaaatgttgtcaaatagaggttatagcggc 319  Q
    |||||||||| |||||||||||||||||||||| ||||||||||||    
9194465 atacggtatttagtacaaaatgttgtcaaatagtggttatagcggc 9194420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 375 - 430
Target Start/End: Complemental strand, 9074134 - 9074079
Alignment:
375 gctatagtggcactataacactgttgtataacggaatttgaacaaaccactgtttt 430  Q
    ||||||| ||| ||||| ||||||||||||| |||||||||||||| |||||||||    
9074134 gctatagcggcgctatagcactgttgtataatggaatttgaacaaaacactgtttt 9074079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 287 - 352
Target Start/End: Complemental strand, 30003314 - 30003249
Alignment:
287 tacaaaatgttgtcaaatagaggttatagcggcgctatagcactgttgtctaacggaatgtgaaca 352  Q
    ||||||||||||||||||||||| || |||||| |||||||| |||||| || | |||| ||||||    
30003314 tacaaaatgttgtcaaatagaggctaaagcggctctatagcattgttgtatagcagaatttgaaca 30003249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 274 - 366
Target Start/End: Complemental strand, 33532524 - 33532432
Alignment:
274 atacggtattaagtacaaaatgttgtcaaatagaggttatagcggcgctatagcactgttgtctaacggaatgtgaacaaaccgctgttttcc 366  Q
    ||||| |||| |||||| |||||||||||| ||  | |||||  |||||||||||||||||  || | |||| ||||||||||||| ||||||    
33532524 atacgctatttagtacagaatgttgtcaaacagcagctatagttgcgctatagcactgttgagtagcagaatttgaacaaaccgctattttcc 33532432  T

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Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 280 - 370
Target Start/End: Complemental strand, 1912533 - 1912443
Alignment:
280 tattaagtacaaaatgttgtcaaatagaggttatagcggcgctatagcactgttgtctaacggaatgtgaacaaaccgctgttttccgcga 370  Q
    |||| |||||||| | ||||||||||| |  ||||| | ||||||||||| ||||  || |||||| |||||||||| || ||||||||||    
1912533 tatttagtacaaattattgtcaaatagcgactatagtgacgctatagcaccgttgcatagcggaatttgaacaaacctctattttccgcga 1912443  T

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Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 409 - 451
Target Start/End: Complemental strand, 5730160 - 5730118
Alignment:
409 aatttgaacaaaccactgttttccacgacccgcgattgacaac 451  Q
    ||||||||||||||||| |||||||||| || |||||||||||    
5730160 aatttgaacaaaccactattttccacgaaccacgattgacaac 5730118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 267 - 332
Target Start/End: Original strand, 19390965 - 19391030
Alignment:
267 ttccgcaatacggtattaagtacaaaatgttgtcaaatagaggttatagcggcgctatagcactgt 332  Q
    |||| ||||| | |||| |||||||| | |||||||||||  ||||||| ||||||||||||||||    
19390965 ttccacaataagctatttagtacaaagtattgtcaaatagcagttatagtggcgctatagcactgt 19391030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 290 - 335
Target Start/End: Complemental strand, 24812579 - 24812534
Alignment:
290 aaaatgttgtcaaatagaggttatagcggcgctatagcactgttgt 335  Q
    ||||| ||| ||||||||| |||||||||||||||||| |||||||    
24812579 aaaatattgccaaatagagattatagcggcgctatagcgctgttgt 24812534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 286 - 334
Target Start/End: Complemental strand, 3784959 - 3784911
Alignment:
286 gtacaaaatgttgtcaaatagaggttatagcggcgctatagcactgttg 334  Q
    ||||||||  |||||||| ||||| |||||||||||| |||||||||||    
3784959 gtacaaaacattgtcaaacagaggctatagcggcgctctagcactgttg 3784911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 47; Significance: 1e-17; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 288 - 366
Target Start/End: Complemental strand, 48517464 - 48517386
Alignment:
288 acaaaatgttgtcaaatagaggttatagcggcgctatagcactgttgtctaacggaatgtgaacaaaccgctgttttcc 366  Q
    |||||||||| |||||||| ||||||||||||||||||||| |||||| || || ||| ||||||||||||| ||||||    
48517464 acaaaatgttttcaaatagtggttatagcggcgctatagcaatgttgtatagcgaaatttgaacaaaccgctattttcc 48517386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 280 - 372
Target Start/End: Complemental strand, 2219552 - 2219461
Alignment:
280 tattaagtacaaaatgttgtcaaatagaggttatagcggcgctatagcactgttgtctaacggaatgtgaacaaaccgctgttttccgcgacc 372  Q
    |||| |||||||||| ||||||||||| ||||||| ||| ||||||||| |||||  |||| |||| |||||||| | || |||||| |||||    
2219552 tatttagtacaaaatattgtcaaatagcggttataacggtgctatagcattgttg-gtaacagaatttgaacaaatcactattttccacgacc 2219461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 267 - 364
Target Start/End: Complemental strand, 18749297 - 18749198
Alignment:
267 ttccgcaatacggtattaagtacaaaatgttgtcaaatagaggttatagcggc--gctatagcactgttgtctaacggaatgtgaacaaaccgctgtttt 364  Q
    |||||| ||||| |||| |||||| |||||||||||| || || |||||| ||  |||||||||||||||| ||||  ||| ||||||||| ||| ||||    
18749297 ttccgctatacgatatttagtacagaatgttgtcaaacagcggctatagcagcacgctatagcactgttgtgtaacataatttgaacaaactgctatttt 18749198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 288 - 368
Target Start/End: Complemental strand, 23117378 - 23117298
Alignment:
288 acaaaatgttgtcaaatagaggttatagcggcgctatagcactgttgtctaacggaatgtgaacaaaccgctgttttccgc 368  Q
    |||||||||||| |||||| || |||||| |||||||||||||||    || |||||| |||||||||| || ||||||||    
23117378 acaaaatgttgtgaaatagtgggtatagcagcgctatagcactgtcacgtagcggaatttgaacaaaccactattttccgc 23117298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 280 - 365
Target Start/End: Complemental strand, 24673451 - 24673366
Alignment:
280 tattaagtacaaaatgttgtcaaatagaggttatagcggcgctatagcactgttgtctaacggaatgtgaacaaaccgctgttttc 365  Q
    |||| ||||||||||||||||||||||  | ||||||||| | ||| ||||||||  || | |||| |||||||||| || |||||    
24673451 tattcagtacaaaatgttgtcaaatagccgctatagcggcaccatatcactgttgcatagctgaatttgaacaaaccactattttc 24673366  T

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Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 379 - 432
Target Start/End: Original strand, 31809136 - 31809189
Alignment:
379 tagtggcactataacactgttgtataacggaatttgaacaaaccactgttttcc 432  Q
    ||||||||||||| ||||||||  || |||||||||| |||||| |||||||||    
31809136 tagtggcactatagcactgttgcgtagcggaatttgatcaaaccgctgttttcc 31809189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 403 - 451
Target Start/End: Complemental strand, 2219496 - 2219448
Alignment:
403 taacggaatttgaacaaaccactgttttccacgacccgcgattgacaac 451  Q
    |||| ||||||||||||| |||| |||||||||||| || |||||||||    
2219496 taacagaatttgaacaaatcactattttccacgacctgcaattgacaac 2219448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 375 - 431
Target Start/End: Complemental strand, 24673422 - 24673366
Alignment:
375 gctatagtggcactataacactgttgtataacggaatttgaacaaaccactgttttc 431  Q
    ||||||| ||||| ||| |||||||| ||| | |||||||||||||||||| |||||    
24673422 gctatagcggcaccatatcactgttgcatagctgaatttgaacaaaccactattttc 24673366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 408 - 452
Target Start/End: Original strand, 27720473 - 27720517
Alignment:
408 gaatttgaacaaaccactgttttccacgacccgcgattgacaaca 452  Q
    |||||||||||||||||| ||||||| || |||| ||||||||||    
27720473 gaatttgaacaaaccactattttccatgatccgcaattgacaaca 27720517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 274 - 370
Target Start/End: Complemental strand, 32612494 - 32612398
Alignment:
274 atacggtattaagtacaaaatgttgtcaaatagaggttatagcggcgctatagcactgttgtctaacggaatgtgaacaaaccgctgttttccgcga 370  Q
    ||||| |||| |||||||||| |||| || ||  || ||| | ||||||||||||||||||| || |||||| |||  |||||||| ||||| ||||    
32612494 atacgctatttagtacaaaatattgtgaagtaccggctatggtggcgctatagcactgttgtgtagcggaatttgactaaaccgctattttctgcga 32612398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 267 - 334
Target Start/End: Complemental strand, 6026010 - 6025943
Alignment:
267 ttccgcaatacggtattaagtacaaaatgttgtcaaatagaggttatagcggcgctatagcactgttg 334  Q
    |||||| ||| | |||| |||||||||||||||||||||| || |||||| |||||||||||||||||    
6026010 ttccgcgatatgctatttagtacaaaatgttgtcaaatagtggctatagcagcgctatagcactgttg 6025943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 378 - 452
Target Start/End: Complemental strand, 12764706 - 12764631
Alignment:
378 atagtggcactataacactgttgtataac-ggaatttgaacaaaccactgttttccacgacccgcgattgacaaca 452  Q
    |||||||||||||||||||| || ||| | ||||||||||||||||||| || | || || |||||||||||||||    
12764706 atagtggcactataacactggtgcatagctggaatttgaacaaaccactattatacatgatccgcgattgacaaca 12764631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 273 - 359
Target Start/End: Original strand, 8856780 - 8856866
Alignment:
273 aatacggtattaagtacaaaatgttgtcaaatagaggttatagcggcgctatagcactgttgtctaacggaatgtgaacaaaccgct 359  Q
    |||||| |||| |||||| | |||||||||||||| | ||||||||| ||||||||||||  | ||  ||||| |||||||||||||    
8856780 aatacgctattcagtacagagtgttgtcaaatagaagctatagcggcactatagcactgtattgtagtggaatttgaacaaaccgct 8856866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 378 - 432
Target Start/End: Original strand, 46937627 - 46937681
Alignment:
378 atagtggcactataacactgttgtataacggaatttgaacaaaccactgttttcc 432  Q
    |||||||| |||||||||||||| ||| ||||||||||||||||| || ||||||    
46937627 atagtggcgctataacactgttgcatagcggaatttgaacaaaccgctattttcc 46937681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 286 - 331
Target Start/End: Complemental strand, 17204720 - 17204675
Alignment:
286 gtacaaaatgttgtcaaatagaggttatagcggcgctatagcactg 331  Q
    ||||||||||||||||||||| |||||||||||||| || ||||||    
17204720 gtacaaaatgttgtcaaatagtggttatagcggcgcaatggcactg 17204675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 380 - 431
Target Start/End: Original strand, 3234585 - 3234636
Alignment:
380 agtggcactataacactgttgtataacggaatttgaacaaaccactgttttc 431  Q
    ||||||||||||||| ||| || || ||||||||||||||| ||||||||||    
3234585 agtggcactataacattgtagtgtagcggaatttgaacaaagcactgttttc 3234636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 253 - 367
Target Start/End: Original strand, 24808356 - 24808470
Alignment:
253 acaaatcactaattttccgcaatacggtattaagtacaaaatgttgtcaaatagaggttatagcggcgctatagcactgttgtctaacggaatgtgaaca 352  Q
    |||||| |||| | |||||| ||| |||||| ||| |||| ||||||||||||  ||| ||||| | |||| |||||||| |  || | |||| ||||||    
24808356 acaaattactattattccgcgatatggtatttagttcaaagtgttgtcaaataatggtcatagcagtgctaaagcactgtagcatagcagaatttgaaca 24808455  T
353 aaccgctgttttccg 367  Q
    |||| ||||||||||    
24808456 aaccactgttttccg 24808470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 388 - 452
Target Start/End: Original strand, 11813980 - 11814044
Alignment:
388 tataacactgttgtataacggaatttgaacaaaccactgttttccacgacccgcgattgacaaca 452  Q
    |||||||||||  | ||||||||||||||||||||||| |||||||| |  ||||||||||||||    
11813980 tataacactgtaatgtaacggaatttgaacaaaccactattttccactaatcgcgattgacaaca 11814044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 253 - 335
Target Start/End: Complemental strand, 45371152 - 45371070
Alignment:
253 acaaatcactaattttccgcaatacggtattaagtacaaaatgttgtcaaatagaggttatagcggcgctatagcactgttgt 335  Q
    ||||| ||||| | |||||||||| | |||| ||||||||||||||||||||||    |||| |||| |||||||||||||||    
45371152 acaaaccactattgttccgcaatatgctatttagtacaaaatgttgtcaaatagctactataacggcactatagcactgttgt 45371070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 285 - 334
Target Start/End: Complemental strand, 16690994 - 16690945
Alignment:
285 agtacaaaatgttgtcaaatagaggttatagcggcgctatagcactgttg 334  Q
    ||||||||||||| ||||||||||| |||| |||| ||||||||||||||    
16690994 agtacaaaatgttttcaaatagagggtataacggcactatagcactgttg 16690945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 266 - 368
Target Start/End: Original strand, 42822605 - 42822707
Alignment:
266 tttccgcaatacggtattaagtacaaaatgttgtcaaatagaggttatagcggcgctatagcactgttgtctaacggaatgtgaacaaaccgctgttttc 365  Q
    |||||||||| |  |||| || |||||||  ||| |||||| || ||||||||||||||||||||||||  ||  ||||| ||||||||| | | |||||    
42822605 tttccgcaatccactatttaggacaaaatactgtgaaatagtggctatagcggcgctatagcactgttgcatagtggaatttgaacaaactgatattttc 42822704  T
366 cgc 368  Q
    |||    
42822705 cgc 42822707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 382 - 430
Target Start/End: Original strand, 4050512 - 4050560
Alignment:
382 tggcactataacactgttgtataacggaatttgaacaaaccactgtttt 430  Q
    |||| ||||| ||||||||| |||| |||||||||||||||||| ||||    
4050512 tggcgctatatcactgttgtgtaacagaatttgaacaaaccactatttt 4050560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 274 - 334
Target Start/End: Original strand, 21226953 - 21227013
Alignment:
274 atacggtattaagtacaaaatgttgtcaaatagaggttatagcggcgctatagcactgttg 334  Q
    ||||| |||| ||||||||||||||||||||||  | |||||  |||||||| ||||||||    
21226953 atacgctattcagtacaaaatgttgtcaaatagctgctatagtagcgctatatcactgttg 21227013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 285 - 365
Target Start/End: Complemental strand, 41686298 - 41686218
Alignment:
285 agtacaaaatgttgtcaaatagaggttatagcggcgctatagcactgttgtctaacggaatgtgaacaaaccgctgttttc 365  Q
    |||||||||| |||| || |||  | |||||||||| |||||||||||||  || || ||| ||||||||||||| |||||    
41686298 agtacaaaatattgtgaagtagctgctatagcggcgttatagcactgttgcatagcgaaatttgaacaaaccgctcttttc 41686218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000005; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 290 - 373
Target Start/End: Original strand, 5987329 - 5987412
Alignment:
290 aaaatgttgtcaaatagaggttatagcggcgctatagcactgttgtctaacggaatgtgaacaaaccgctgttttccgcgaccg 373  Q
    ||||||||||||| ||| || |||||||||||||||||||| |||  ||| ||||| ||| ||||| ||| ||||| |||||||    
5987329 aaaatgttgtcaagtagtggctatagcggcgctatagcactattgcataatggaatttgatcaaactgctattttctgcgaccg 5987412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 280 - 330
Target Start/End: Original strand, 22532590 - 22532640
Alignment:
280 tattaagtacaaaatgttgtcaaatagaggttatagcggcgctatagcact 330  Q
    ||||||||||||||| ||||| |||||||||||||| ||| ||||||||||    
22532590 tattaagtacaaaatattgtcgaatagaggttatagtggcactatagcact 22532640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 280 - 357
Target Start/End: Original strand, 4787946 - 4788023
Alignment:
280 tattaagtacaaaatgttgtcaaatagaggttatagcggcgctatagcactgttgtctaacggaatgtgaacaaaccg 357  Q
    |||| |||||||||||||||||||||| || || |  ||| ||||||||||||| | || |||||| |||||||||||    
4787946 tatttagtacaaaatgttgtcaaatagtggctacacaggcactatagcactgttttatatcggaatttgaacaaaccg 4788023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 267 - 328
Target Start/End: Original strand, 5516022 - 5516083
Alignment:
267 ttccgcaatacggtattaagtacaaaatgttgtcaaatagaggttatagcggcgctatagca 328  Q
    |||||||||||  ||||||||||| |||| ||||||||||||| |||||| || ||||||||    
5516022 ttccgcaatacactattaagtacacaatggtgtcaaatagaggctatagcagcactatagca 5516083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 272 - 368
Target Start/End: Original strand, 6586544 - 6586640
Alignment:
272 caatacggtattaagtacaaaatgttgtcaaatagaggttatagcggcgctatagcactgttgtctaacggaatgtgaacaaaccgctgttttccgc 368  Q
    ||||| |||||| ||| |||||| |||||||| || |||||||| | |||||||| ||| |||  ||  ||||| ||||||||||||| ||||||||    
6586544 caatatggtatttagtgcaaaatattgtcaaacagcggttatagtgccgctatagaactattgcatagaggaatttgaacaaaccgctattttccgc 6586640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 387 - 431
Target Start/End: Original strand, 42440170 - 42440214
Alignment:
387 ctataacactgttgtataacggaatttgaacaaaccactgttttc 431  Q
    |||||||||||| | ||| ||||||||||||||||||||||||||    
42440170 ctataacactgtagcatagcggaatttgaacaaaccactgttttc 42440214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 311 - 365
Target Start/End: Complemental strand, 9634944 - 9634890
Alignment:
311 tatagcggcgctatagcactgttgtctaacggaatgtgaacaaaccgctgttttc 365  Q
    |||||||||||||||||| |||||  || |||||| ||||||||||||| |||||    
9634944 tatagcggcgctatagcaatgttgcgtagcggaatttgaacaaaccgctattttc 9634890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 388 - 454
Target Start/End: Original strand, 13898736 - 13898802
Alignment:
388 tataacactgttgtataacggaatttgaacaaaccactgttttccacgacccgcgattgacaacatt 454  Q
    |||| ||||||||| || |||||||| ||||| ||||| |||||||| | ||| |||||||||||||    
13898736 tatagcactgttgtgtagcggaattttaacaacccactattttccactatccgtgattgacaacatt 13898802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 296 - 370
Target Start/End: Original strand, 42440145 - 42440219
Alignment:
296 ttgtcaaatagaggttatagcggcgctatagcactgttgtctaacggaatgtgaacaaaccgctgttttccgcga 370  Q
    |||||||||||||| |||||| | |||||| |||||| |  || |||||| |||||||||| |||||||| ||||    
42440145 ttgtcaaatagaggctatagcagtgctataacactgtagcatagcggaatttgaacaaaccactgttttctgcga 42440219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 406 - 451
Target Start/End: Original strand, 29466272 - 29466317
Alignment:
406 cggaatttgaacaaaccactgttttccacgacccgcgattgacaac 451  Q
    |||||||||||||||||| | ||||||| || ||||||||||||||    
29466272 cggaatttgaacaaaccattattttccaggatccgcgattgacaac 29466317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 375 - 420
Target Start/End: Original strand, 34556526 - 34556571
Alignment:
375 gctatagtggcactataacactgttgtataacggaatttgaacaaa 420  Q
    ||||||||||||||||| |||| ||| |||| ||||||||||||||    
34556526 gctatagtggcactatagcactattgcataatggaatttgaacaaa 34556571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000005; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 274 - 333
Target Start/End: Original strand, 34581607 - 34581666
Alignment:
274 atacggtattaagtacaaaatgttgtcaaatagaggttatagcggcgctatagcactgtt 333  Q
    ||||| |||| |||||||||||||||||||||| || |||||  ||||||||||||||||    
34581607 atacgctatttagtacaaaatgttgtcaaatagcggctatagtagcgctatagcactgtt 34581666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 268 - 329
Target Start/End: Complemental strand, 4762590 - 4762529
Alignment:
268 tccgcaatacggtattaagtacaaaatgttgtcaaatagaggttatagcggcgctatagcac 329  Q
    ||||||||||| |||| ||||||||||||||||||||||  ||||||| ||| | |||||||    
4762590 tccgcaatacgctatttagtacaaaatgttgtcaaatagccgttatagtggcaccatagcac 4762529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 285 - 357
Target Start/End: Complemental strand, 4683841 - 4683769
Alignment:
285 agtacaaaatgttgtcaaatagaggttatagcggcgctatagcactgttgtctaacggaatgtgaacaaaccg 357  Q
    |||||||||| ||||||||||| || |||| |||||||||||| | ||||| |||| |||| | |||||||||    
4683841 agtacaaaatattgtcaaataggggctatatcggcgctatagcgcagttgtgtaacagaattttaacaaaccg 4683769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 292 - 330
Target Start/End: Complemental strand, 3304308 - 3304270
Alignment:
292 aatgttgtcaaatagaggttatagcggcgctatagcact 330  Q
    |||||||||||||||  ||||||||||||||||||||||    
3304308 aatgttgtcaaatagcagttatagcggcgctatagcact 3304270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 275 - 329
Target Start/End: Original strand, 13256204 - 13256258
Alignment:
275 tacggtattaagtacaaaatgttgtcaaatagaggttatagcggcgctatagcac 329  Q
    |||| |||| |||||||||||||| ||||||| | ||||||||||| ||||||||    
13256204 tacgctattcagtacaaaatgttgccaaatagtgattatagcggcgttatagcac 13256258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 285 - 326
Target Start/End: Original strand, 682009 - 682050
Alignment:
285 agtacaaaatgttgtcaaatagaggttatagcggcgctatag 326  Q
    ||||||| |||||||||||||||||||||||| | |||||||    
682009 agtacaacatgttgtcaaatagaggttatagcagtgctatag 682050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 285 - 366
Target Start/End: Original strand, 42647417 - 42647498
Alignment:
285 agtacaaaatgttgtcaaatagaggttatagcggcgctatagcactgttgtctaacggaatgtgaacaaaccgctgttttcc 366  Q
    |||||||||| |||||||| ||  ||||||||||| ||| |||  |||||  || |||||| ||||||||||||| ||||||    
42647417 agtacaaaatattgtcaaacagtagttatagcggcactagagctttgttgcgtagcggaatttgaacaaaccgctattttcc 42647498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000005; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 280 - 367
Target Start/End: Original strand, 24830171 - 24830258
Alignment:
280 tattaagtacaaaatgttgtcaaatagaggttatagcggcgctatagcactgttgtctaacggaatgtgaacaaaccgctgttttccg 367  Q
    |||| |||| |||||||||||||||| ||| |||| ||||||||||||||| |||| || |  ||| ||||||||| | |||||||||    
24830171 tatttagtataaaatgttgtcaaataaaggctatatcggcgctatagcactcttgtgtagcaaaatttgaacaaactgttgttttccg 24830258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 253 - 330
Target Start/End: Complemental strand, 50402707 - 50402630
Alignment:
253 acaaatcactaattttccgcaatacggtattaagtacaaaatgttgtcaaatagaggttatagcggcgctatagcact 330  Q
    ||||||||||| | |||||||||| | |||| |||| ||| |||||||||||||  | |||||| |||||||||||||    
50402707 acaaatcactattgttccgcaatatgctatttagtataaagtgttgtcaaatagcagctatagctgcgctatagcact 50402630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 253 - 356
Target Start/End: Original strand, 7877781 - 7877884
Alignment:
253 acaaatcactaattttccgcaatacggtattaagtacaaaatgttgtcaaatagaggttatagcggcgctatagcactgttgtctaacggaatgtgaaca 352  Q
    ||||||||||| | |||| ||||||| |||| ||||||   |||| ||||||||||| ||| | | |||||||||||||| || ||  ||||| ||||||    
7877781 acaaatcactattgttccacaatacgctatttagtacagtttgttatcaaatagaggctattgggacgctatagcactgtagtgtagtggaatttgaaca 7877880  T
353 aacc 356  Q
    ||||    
7877881 aacc 7877884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 280 - 322
Target Start/End: Complemental strand, 8789001 - 8788959
Alignment:
280 tattaagtacaaaatgttgtcaaatagaggttatagcggcgct 322  Q
    |||||| ||||||||||||||||||||||| ||||| ||||||    
8789001 tattaaatacaaaatgttgtcaaatagaggctatagtggcgct 8788959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 285 - 330
Target Start/End: Complemental strand, 43307649 - 43307604
Alignment:
285 agtacaaaatgttgtcaaatagaggttatagcggcgctatagcact 330  Q
    ||||||||||||||| | |||| |||||||| ||||||||||||||    
43307649 agtacaaaatgttgttagatagtggttatagtggcgctatagcact 43307604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 290 - 335
Target Start/End: Complemental strand, 43307712 - 43307667
Alignment:
290 aaaatgttgtcaaatagaggttatagcggcgctatagcactgttgt 335  Q
    |||||||||||| |||| |||||||| |||||||||||||| ||||    
43307712 aaaatgttgtcagatagcggttatagtggcgctatagcactattgt 43307667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 285 - 358
Target Start/End: Original strand, 54838621 - 54838694
Alignment:
285 agtacaaaatgttgtcaaatagaggttatagcggcgctatagcactgttgtctaacggaatgtgaacaaaccgc 358  Q
    |||||||||||||||||||||| || || |  | ||||||||||||||||   | |||||| ||||||||||||    
54838621 agtacaaaatgttgtcaaatagtggctaaaatgccgctatagcactgttgcacagcggaatttgaacaaaccgc 54838694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 295 - 327
Target Start/End: Original strand, 402793 - 402825
Alignment:
295 gttgtcaaatagaggttatagcggcgctatagc 327  Q
    ||||||||||||| |||||||||||||||||||    
402793 gttgtcaaatagaagttatagcggcgctatagc 402825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 384 - 431
Target Start/End: Original strand, 17505001 - 17505048
Alignment:
384 gcactataacactgttgtataacggaatttgaacaaaccactgttttc 431  Q
    |||||||||||||||||| || |||||||||||||||| ||| |||||    
17505001 gcactataacactgttgtgtagcggaatttgaacaaacaactattttc 17505048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 274 - 335
Target Start/End: Original strand, 36300410 - 36300474
Alignment:
274 atacggtattaagtacaaaatgttgtcaaatagaggttata---gcggcgctatagcactgttgt 335  Q
    ||||| |||| |||||||||||||||||||||| || ||||   |||||||||||||||| ||||    
36300410 atacgctatttagtacaaaatgttgtcaaatagtggatatagtggcggcgctatagcactattgt 36300474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 274 - 311
Target Start/End: Original strand, 24097778 - 24097815
Alignment:
274 atacggtattaagtacaaaatgttgtcaaatagaggtt 311  Q
    |||||||||| |||||||||||||||||||||| ||||    
24097778 atacggtatttagtacaaaatgttgtcaaatagcggtt 24097815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 407 - 452
Target Start/End: Original strand, 29378606 - 29378651
Alignment:
407 ggaatttgaacaaaccactgttttccacgacccgcgattgacaaca 452  Q
    |||||||||||||||| || ||| |||||| |||||||||||||||    
29378606 ggaatttgaacaaaccgctatttcccacgatccgcgattgacaaca 29378651  T

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