View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1923_low_5 (Length: 439)

Name: NF1923_low_5
Description: NF1923
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1923_low_5
NF1923_low_5
[»] chr3 (5 HSPs)
chr3 (67-187)||(7301224-7301344)
chr3 (273-424)||(7301430-7301583)
chr3 (97-186)||(31106093-31106182)
chr3 (273-362)||(31106267-31106356)
chr3 (108-179)||(20880404-20880474)
[»] chr8 (2 HSPs)
chr8 (105-179)||(1058146-1058220)
chr8 (138-179)||(10758328-10758369)
[»] chr1 (2 HSPs)
chr1 (109-179)||(27976523-27976593)
chr1 (109-179)||(37473327-37473397)
[»] chr7 (5 HSPs)
chr7 (122-187)||(40252171-40252236)
chr7 (105-178)||(46078071-46078144)
chr7 (135-186)||(20269530-20269581)
chr7 (138-180)||(8960698-8960740)
chr7 (149-186)||(28613599-28613636)
[»] chr5 (2 HSPs)
chr5 (122-177)||(35445996-35446051)
chr5 (149-177)||(37112332-37112360)
[»] chr6 (2 HSPs)
chr6 (108-178)||(24626222-24626292)
chr6 (108-178)||(30536405-30536475)
[»] chr4 (4 HSPs)
chr4 (111-179)||(19494844-19494912)
chr4 (109-179)||(54069489-54069559)
chr4 (107-179)||(17204064-17204136)
chr4 (149-185)||(41336728-41336764)
[»] chr2 (5 HSPs)
chr2 (106-178)||(42868534-42868606)
chr2 (108-180)||(45229439-45229511)
chr2 (105-179)||(42659223-42659297)
chr2 (110-179)||(41812162-41812231)
chr2 (109-177)||(13325498-13325566)


Alignment Details
Target: chr3 (Bit Score: 117; Significance: 2e-59; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 67 - 187
Target Start/End: Original strand, 7301224 - 7301344
Alignment:
Q  67 tgtttttgtaggttatattacaatcatttttcacgtttagcgcttatgtatgagtttacatatgctaattttatagctaataataaaacaaagttaaatt 166  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7301224 tgtttttgtaggttatattacaatcatttttcacgtttagcgcttatgtatgagtttacatatgctaattttatagctaataataaaacaaagttaaatt 7301323  T
Q  167 gtttttgtatatgtcataagc 187  Q
    |||||| ||||||||||||||    
T  7301324 gtttttttatatgtcataagc 7301344  T

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Target: chr3; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 273 - 424
Target Start/End: Original strand, 7301430 - 7301583
Alignment:
Q  273 ctcccaaagagtcttataaaatgtatgcctatatataagctcgaataaactaattgtaataggcccttatttccatatagaataatctttttag--nnnn 370  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          
T  7301430 ctcccaaagagtcttataaaatgtatgcctatgtataagctcgaataaactaattgtaataggcccttatttccatatagaataatctttttaggttttt 7301529  T
Q  371 nnnnnagttcagattaaaacttctctatttctttgaaggttacttggttaaaac 424  Q
         |||||| |||||||||||||| |||||||||||||||||||||||||||    
T  7301530 tttttagttcaaattaaaacttctctttttctttgaaggttacttggttaaaac 7301583  T

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Target: chr3; HSP #3
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 97 - 186
Target Start/End: Original strand, 31106093 - 31106182
Alignment:
Q  97 tcacgtttagcgcttatgtatgagtttacatatgctaattttatagctaataataaaacaaagttaaattgtttttgtatatgtcataag 186  Q
    |||| ||||| ||||||||||||| ||||||| |||||||||||||||||||||| ||  |||||||||| ||||||||||||| |||||    
T  31106093 tcacatttagtgcttatgtatgagcttacataagctaattttatagctaataatataatgaagttaaattatttttgtatatgttataag 31106182  T

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Target: chr3; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 273 - 362
Target Start/End: Original strand, 31106267 - 31106356
Alignment:
Q  273 ctcccaaagagtcttataaaatgtatgcctatatataagctcgaataaactaattgtaataggcccttatttccatatagaataatcttt 362  Q
    |||||||| ||||||||||||  |||||| |||||||||||||||||| ||||||  |||| |||||||||| ||||||| |||||||||    
T  31106267 ctcccaaacagtcttataaaacatatgccgatatataagctcgaataagctaattcaaataagcccttattttcatatagtataatcttt 31106356  T

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Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 108 - 179
Target Start/End: Original strand, 20880404 - 20880474
Alignment:
Q  108 gcttatgtatgagtttacatatgctaattttatagctaataataaaacaaagttaaattgtttttgtatatg 179  Q
    |||||||||| || ||||||| |||| ||||||||| ||| ||||||||| |||||||||||||||||||||    
T  20880404 gcttatgtataagcttacataagctatttttatagcaaatgataaaacaa-gttaaattgtttttgtatatg 20880474  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 105 - 179
Target Start/End: Complemental strand, 1058220 - 1058146
Alignment:
Q  105 agcgcttatgtatgagtttacatatgctaattttatagctaataataaaacaaagttaaattgtttttgtatatg 179  Q
    ||||||||||||| || ||||||| |||| ||||||||| ||| |||||| ||||||||  ||||||||||||||    
T  1058220 agcgcttatgtataagcttacataagctatttttatagcaaatcataaaataaagttaatctgtttttgtatatg 1058146  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 138 - 179
Target Start/End: Complemental strand, 10758369 - 10758328
Alignment:
Q  138 tatagctaataataaaacaaagttaaattgtttttgtatatg 179  Q
    |||||| ||| |||||| ||||||||||||||||||||||||    
T  10758369 tatagcaaatcataaaataaagttaaattgtttttgtatatg 10758328  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 109 - 179
Target Start/End: Original strand, 27976523 - 27976593
Alignment:
Q  109 cttatgtatgagtttacatatgctaattttatagctaataataaaacaaagttaaattgtttttgtatatg 179  Q
    ||||||||| || ||||||| |||| ||||||||| ||| ||  |||||||||||||||||||||||||||    
T  27976523 cttatgtataagcttacataagctatttttatagcaaatgattgaacaaagttaaattgtttttgtatatg 27976593  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 109 - 179
Target Start/End: Original strand, 37473327 - 37473397
Alignment:
Q  109 cttatgtatgagtttacatatgctaattttatagctaataataaaacaaagttaaattgtttttgtatatg 179  Q
    ||||||||| || ||||||| |||| ||||||||| ||| ||||||||||||||| | |||| ||||||||    
T  37473327 cttatgtataagcttacataagctatttttatagcaaatgataaaacaaagttaagtcgtttatgtatatg 37473397  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000003; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 122 - 187
Target Start/End: Complemental strand, 40252236 - 40252171
Alignment:
Q  122 ttacatatgctaattttatagctaataataaaacaaagttaaattgtttttgtatatgtcataagc 187  Q
    ||||||| |||| |||||| || ||| ||||||||||||||||| |||||||||||||| ||||||    
T  40252236 ttacataagctagttttattgcaaatgataaaacaaagttaaatcgtttttgtatatgttataagc 40252171  T

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Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 105 - 178
Target Start/End: Original strand, 46078071 - 46078144
Alignment:
Q  105 agcgcttatgtatgagtttacatatgctaattttatagctaataataaaacaaagttaaattgtttttgtatat 178  Q
    ||||||||||||| || ||||||| | || ||||||||  ||  ||||||||||||||||||||||||||||||    
T  46078071 agcgcttatgtataagcttacataagttatttttatagaaaaagataaaacaaagttaaattgtttttgtatat 46078144  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 135 - 186
Target Start/End: Original strand, 20269530 - 20269581
Alignment:
Q  135 ttttatagctaataataaaacaaagttaaattgtttttgtatatgtcataag 186  Q
    ||||||||| ||  ||||||||||||||||||||||||||| |||| |||||    
T  20269530 ttttatagcaaaagataaaacaaagttaaattgtttttgtaaatgttataag 20269581  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 138 - 180
Target Start/End: Complemental strand, 8960740 - 8960698
Alignment:
Q  138 tatagctaataataaaacaaagttaaattgtttttgtatatgt 180  Q
    |||||| ||| |||||| |||||||||||||||||||||||||    
T  8960740 tatagcaaatgataaaataaagttaaattgtttttgtatatgt 8960698  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 149 - 186
Target Start/End: Complemental strand, 28613636 - 28613599
Alignment:
Q  149 ataaaacaaagttaaattgtttttgtatatgtcataag 186  Q
    ||||||||||||||||||||||||||||| || |||||    
T  28613636 ataaaacaaagttaaattgtttttgtataagttataag 28613599  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 122 - 177
Target Start/End: Original strand, 35445996 - 35446051
Alignment:
Q  122 ttacatatgctaattttatagctaataataaaacaaagttaaattgtttttgtata 177  Q
    ||||||| |||| ||||||||| ||| |||||| ||||||||||||||||||||||    
T  35445996 ttacataagctatttttatagcaaatgataaaataaagttaaattgtttttgtata 35446051  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 149 - 177
Target Start/End: Complemental strand, 37112360 - 37112332
Alignment:
Q  149 ataaaacaaagttaaattgtttttgtata 177  Q
    |||||||||||||||||||||||||||||    
T  37112360 ataaaacaaagttaaattgtttttgtata 37112332  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 108 - 178
Target Start/End: Original strand, 24626222 - 24626292
Alignment:
Q  108 gcttatgtatgagtttacatatgctaattttatagctaataataaaacaaagttaaattgtttttgtatat 178  Q
    |||||||||| || ||||||| |||| || |||||  ||  ||||||||||||||||||||||||||||||    
T  24626222 gcttatgtataagcttacataagctatttctataggaaaggataaaacaaagttaaattgtttttgtatat 24626292  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 108 - 178
Target Start/End: Original strand, 30536405 - 30536475
Alignment:
Q  108 gcttatgtatgagtttacatatgctaattttatagctaataataaaacaaagttaaattgtttttgtatat 178  Q
    |||||||||| ||||| |||| |||| | ||||||| ||| |||||| || ||||||||||||||||||||    
T  30536405 gcttatgtataagtttgcataagctattattatagcaaatgataaaataatgttaaattgtttttgtatat 30536475  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 111 - 179
Target Start/End: Original strand, 19494844 - 19494912
Alignment:
Q  111 tatgtatgagtttacatatgctaattttatagctaataataaaacaaagttaaattgtttttgtatatg 179  Q
    ||||||| || ||||||| |||| || |||||| ||| |||||| |||| |||||||||||||||||||    
T  19494844 tatgtataaggttacataagctagttctatagcaaatgataaaataaagctaaattgtttttgtatatg 19494912  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 109 - 179
Target Start/End: Complemental strand, 54069559 - 54069489
Alignment:
Q  109 cttatgtatgagtttacatatgctaattttatagctaataataaaacaaagttaaattgtttttgtatatg 179  Q
    ||||||||| || || ||||||||| ||||||| | ||  |||||| || |||||||||||||||||||||    
T  54069559 cttatgtataagcttgcatatgctatttttatatcaaaagataaaataatgttaaattgtttttgtatatg 54069489  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 107 - 179
Target Start/End: Original strand, 17204064 - 17204136
Alignment:
Q  107 cgcttatgtatgagtttacatatgctaattttatagctaataataaaacaaagttaaattgtttttgtatatg 179  Q
    ||||||||| | || ||||||| |||  ||||||||| |||  ||||| ||||||| ||||||||||||||||    
T  17204064 cgcttatgtgttagcttacataagctgtttttatagcaaatgttaaaataaagttatattgtttttgtatatg 17204136  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 149 - 185
Target Start/End: Original strand, 41336728 - 41336764
Alignment:
Q  149 ataaaacaaagttaaattgtttttgtatatgtcataa 185  Q
    |||||| ||||||||||||||||||||||||| ||||    
T  41336728 ataaaataaagttaaattgtttttgtatatgttataa 41336764  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 106 - 178
Target Start/End: Complemental strand, 42868606 - 42868534
Alignment:
Q  106 gcgcttatgtatgagtttacatatgctaattttatagctaataataaaacaaagttaaattgtttttgtatat 178  Q
    ||||||||| || |||||||||| |||| ||| ||||  ||  |||||| |||||||||||||||||||||||    
T  42868606 gcgcttatgcataagtttacataagctattttcatagaaaaagataaaataaagttaaattgtttttgtatat 42868534  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 108 - 180
Target Start/End: Original strand, 45229439 - 45229511
Alignment:
Q  108 gcttatgtatgagtttacatatgctaattttatagctaataataaaacaaagttaaattgtttttgtatatgt 180  Q
    |||||||||| |||||||||| |||| || |||||| ||  ||||||  | ||||||||||||||||||||||    
T  45229439 gcttatgtataagtttacataagctatttctatagcaaacgataaaatgaggttaaattgtttttgtatatgt 45229511  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 105 - 179
Target Start/End: Complemental strand, 42659297 - 42659223
Alignment:
Q  105 agcgcttatgtatgagtttacatatgctaattttatagctaataataaaacaaagttaaattgtttttgtatatg 179  Q
    ||||||||||||| || ||||||| |||| |||||| |  |||  ||||| ||||| ||||||||||||||||||    
T  42659297 agcgcttatgtataagcttacataagctatttttatggaaaatggtaaaataaagtgaaattgtttttgtatatg 42659223  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 110 - 179
Target Start/End: Complemental strand, 41812231 - 41812162
Alignment:
Q  110 ttatgtatgagtttacatatgctaattttatagctaataataaaacaaagttaaattgtttttgtatatg 179  Q
    |||||||| || ||||||| |||| |||||| || |||  |||||  |||||||||||||||||||||||    
T  41812231 ttatgtataagcttacataagctatttttatggcaaatggtaaaatgaagttaaattgtttttgtatatg 41812162  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 109 - 177
Target Start/End: Original strand, 13325498 - 13325566
Alignment:
Q  109 cttatgtatgagtttacatatgctaattttatagctaataataaaacaaagttaaattgtttttgtata 177  Q
    |||||||||||| | ||||| |||| ||||||||  ||| |||||| ||||||||||| |||| |||||    
T  13325498 cttatgtatgaggtaacataagctagttttatagaaaatgataaaataaagttaaattattttcgtata 13325566  T

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