View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1923_low_7 (Length: 377)
Name: NF1923_low_7
Description: NF1923
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1923_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 342; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 13 - 362
Target Start/End: Complemental strand, 10985273 - 10984924
Alignment:
| Q |
13 |
tgaatgtattggaccgagatctataggagcagcttgtgagaattcttacaaagccggcatgtgagatgtggattgtcctcacttacaaacacacgttcat |
112 |
Q |
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| T |
10985273 |
tgaatgtattggaccgagatctataggagcagcttgtgagaattcttacaaagccggcatgtgagatgtggattatcctcacttacaaacacacgttcat |
10985174 |
T |
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| Q |
113 |
accatattttgttcaatgtgaggctccttaacattgaataaacattaagtctcatattgcaaatattaggattcatagattacctagttaaaataggttc |
212 |
Q |
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| T |
10985173 |
accatattttgttcaatgtgaggctccttaacattgaataaacattaagtctcatattgcaaatattaggattcatagattacctagttaaaataggttc |
10985074 |
T |
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| Q |
213 |
aaatatgatcatcatccaatcctaatttaacgaatataaccgttcataatagctaacaacttaattaaatgtataaaaaacaatacatttaattgagatg |
312 |
Q |
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| T |
10985073 |
aaatatgatcatcatccaatcctaatttaacgaatataaccgttcataatagctaacaacttaattaaatgtataagaaacaatacatttaattgagatg |
10984974 |
T |
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| Q |
313 |
ttatatatcttcaatcttgtcttgaatgaaaatcgccaccttataggttg |
362 |
Q |
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| T |
10984973 |
ttatatatcttcaatcttgtcttgaatgaaaatcgccaccttataggttg |
10984924 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 84 - 127
Target Start/End: Original strand, 7429794 - 7429837
Alignment:
| Q |
84 |
attgtcctcacttacaaacacacgttcataccatattttgttca |
127 |
Q |
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| T |
7429794 |
attgtcctcacttacaaacacatgttcatgccatattttgttca |
7429837 |
T |
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