View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1923_low_9 (Length: 301)
Name: NF1923_low_9
Description: NF1923
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1923_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 1 - 291
Target Start/End: Original strand, 29138664 - 29138954
Alignment:
| Q |
1 |
ctagggagggtttggttatatattcagtagcttatattgatggaagtcgtggccgaaggcctgtggcccacagattgagttttgttgagatggttgtccc |
100 |
Q |
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| T |
29138664 |
ctagggagggtttggttatttattcagtagcttatattgatggaagtcgtggccgaaggcctgtggcccacagattgagttttgttgagatggttgtccc |
29138763 |
T |
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| Q |
101 |
ttatggagatccaaatgatcctcattataggaaaaatgcttttgatgccggggaagatggcctcggtaaaaatgctcattcactcaagaaggtcaaggca |
200 |
Q |
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| T |
29138764 |
ttatggagatccaaatgatcctcattataggaaaaatgcttttgatgccggggaagatggcctcggtaaaaatgctcattcactcaagaaggtcaaggca |
29138863 |
T |
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| Q |
201 |
tttatttggacgcagttccgaccattcatatcttagttttctctaattttttctttagtttagaagttattgaatttcttttccttgatga |
291 |
Q |
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| T |
29138864 |
tttatttggacatagttccgaccattcatatcttagttttctctaattttttctttagtttagaagttattgaatttcttttccttgatga |
29138954 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 123; Significance: 3e-63; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 9 - 203
Target Start/End: Original strand, 14296643 - 14296837
Alignment:
| Q |
9 |
ggtttggttatatattcagtagcttatattgatggaagtcgtggccgaaggcctgtggcccacagattgagttttgttgagatggttgtcccttatggag |
108 |
Q |
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| T |
14296643 |
ggtttagttatttattcagtagcatatattgatggaagtcgaggccgaaggccagtggcacacagattgagtttcgttgagatggtggtcccgtacggag |
14296742 |
T |
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| Q |
109 |
atccaaatgatcctcattataggaaaaatgcttttgatgccggggaagatggcctcggtaaaaatgctcattcactcaagaaggtcaaggcattt |
203 |
Q |
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| T |
14296743 |
atccaaatgatcctcactataggaagaatgcatttgatgcaggagaagatggccttggtaaaaatgctcattctctcaaaaaggtcaaggcattt |
14296837 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 81; Significance: 4e-38; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 9 - 193
Target Start/End: Original strand, 34613482 - 34613666
Alignment:
| Q |
9 |
ggtttggttatatattcagtagcttatattgatggaagtcgtggccgaaggcctgtggcccacagattgagttttgttgagatggttgtcccttatggag |
108 |
Q |
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|||||| |||||||||| || || ||| ||||||| ||||| || ||||||||||||| || || |||||||||| ||||||||||| || ||||||| |
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| T |
34613482 |
ggtttgattatatattctgttgcatatgttgatggtagtcgagggagaaggcctgtggctcataggctgagttttgtggagatggttgtaccctatggag |
34613581 |
T |
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| Q |
109 |
atccaaatgatcctcattataggaaaaatgcttttgatgccggggaagatggcctcggtaaaaatgctcattcactcaagaaggt |
193 |
Q |
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|||||| ||| || ||||||||||||||||||||||||||||| || |||||| | || |||||||| ||||| ||||||||||| |
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| T |
34613582 |
atccaactgaaccacattataggaaaaatgcttttgatgccggcgaggatggcttgggaaaaaatgcacattccctcaagaaggt |
34613666 |
T |
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