View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19240_high_14 (Length: 362)

Name: NF19240_high_14
Description: NF19240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19240_high_14
NF19240_high_14
[»] chr1 (12 HSPs)
chr1 (9-265)||(9849941-9850197)
chr1 (112-247)||(18655439-18655572)
chr1 (109-187)||(9822701-9822778)
chr1 (109-187)||(30743137-30743214)
chr1 (109-187)||(43808510-43808587)
chr1 (108-196)||(21246463-21246550)
chr1 (109-193)||(43807479-43807562)
chr1 (113-219)||(40721802-40721909)
chr1 (113-219)||(40723025-40723131)
chr1 (112-142)||(18656690-18656720)
chr1 (113-166)||(49784979-49785032)
chr1 (156-252)||(52439320-52439417)
[»] chr4 (21 HSPs)
chr4 (14-245)||(54822370-54822601)
chr4 (9-243)||(54823146-54823381)
chr4 (112-242)||(21570414-21570544)
chr4 (112-221)||(31205700-31205809)
chr4 (112-206)||(31204585-31204679)
chr4 (112-219)||(44219019-44219126)
chr4 (112-221)||(21569266-21569375)
chr4 (112-220)||(42698652-42698760)
chr4 (116-219)||(42713481-42713584)
chr4 (109-196)||(5417345-5417431)
chr4 (109-187)||(26045182-26045259)
chr4 (109-187)||(43709863-43709940)
chr4 (109-187)||(47243979-47244056)
chr4 (110-187)||(47573634-47573710)
chr4 (109-193)||(43708880-43708963)
chr4 (109-161)||(47243027-47243079)
chr4 (109-196)||(11482837-11482924)
chr4 (109-159)||(50497072-50497122)
chr4 (51-97)||(54372886-54372932)
chr4 (40-97)||(20945396-20945453)
chr4 (180-224)||(17522619-17522663)
[»] chr3 (20 HSPs)
chr3 (19-251)||(50003121-50003354)
chr3 (112-243)||(27225427-27225558)
chr3 (112-221)||(21247252-21247361)
chr3 (112-247)||(21248248-21248383)
chr3 (112-247)||(27226530-27226665)
chr3 (112-197)||(50002453-50002538)
chr3 (112-246)||(5411230-5411363)
chr3 (110-187)||(50765764-50765840)
chr3 (112-166)||(5409409-5409463)
chr3 (109-159)||(32999874-32999924)
chr3 (109-187)||(50150771-50150848)
chr3 (112-245)||(55387637-55387770)
chr3 (109-159)||(2088919-2088969)
chr3 (112-220)||(5384437-5384546)
chr3 (107-187)||(33000787-33000866)
chr3 (113-187)||(39530845-39530918)
chr3 (18-94)||(14206677-14206754)
chr3 (18-94)||(14214425-14214502)
chr3 (108-196)||(45730678-45730765)
chr3 (109-161)||(53901644-53901696)
[»] chr7 (25 HSPs)
chr7 (112-245)||(43704443-43704576)
chr7 (9-243)||(36584793-36585027)
chr7 (112-219)||(35045885-35045992)
chr7 (25-243)||(40321063-40321281)
chr7 (16-219)||(42521153-42521357)
chr7 (112-240)||(47536841-47536969)
chr7 (112-221)||(47535675-47535784)
chr7 (40-221)||(42520239-42520418)
chr7 (18-174)||(40322132-40322288)
chr7 (108-196)||(33070646-33070733)
chr7 (112-243)||(35044613-35044745)
chr7 (18-243)||(43703045-43703272)
chr7 (9-221)||(36583872-36584086)
chr7 (112-196)||(23153621-23153705)
chr7 (109-196)||(47537029-47537115)
chr7 (115-248)||(16955681-16955814)
chr7 (147-241)||(16957432-16957526)
chr7 (109-187)||(40881141-40881218)
chr7 (112-174)||(29103301-29103365)
chr7 (109-145)||(29345068-29345104)
chr7 (108-183)||(37783635-37783709)
chr7 (18-96)||(35045791-35045869)
chr7 (109-187)||(37782007-37782084)
chr7 (169-221)||(25734784-25734835)
chr7 (113-141)||(29657085-29657113)
[»] chr5 (17 HSPs)
chr5 (112-221)||(39051663-39051772)
chr5 (112-220)||(38603741-38603849)
chr5 (112-241)||(5163656-5163785)
chr5 (112-244)||(39050681-39050813)
chr5 (112-243)||(42962017-42962148)
chr5 (18-247)||(8359311-8359540)
chr5 (112-243)||(42963206-42963337)
chr5 (111-239)||(8358166-8358294)
chr5 (112-223)||(301376-301485)
chr5 (109-196)||(11907150-11907236)
chr5 (112-220)||(38602679-38602788)
chr5 (109-159)||(39135637-39135687)
chr5 (148-220)||(30673336-30673408)
chr5 (109-196)||(23679188-23679274)
chr5 (109-196)||(23855538-23855624)
chr5 (109-196)||(39134708-39134794)
chr5 (109-159)||(24071432-24071482)
[»] chr8 (18 HSPs)
chr8 (11-221)||(44770504-44770714)
chr8 (112-221)||(43415959-43416068)
chr8 (112-244)||(41767155-41767287)
chr8 (120-244)||(43414374-43414498)
chr8 (112-243)||(41766116-41766247)
chr8 (112-174)||(44769742-44769804)
chr8 (108-183)||(4535017-4535091)
chr8 (109-196)||(4534075-4534161)
chr8 (110-185)||(23768475-23768549)
chr8 (109-187)||(9189444-9189521)
chr8 (109-187)||(9190431-9190508)
chr8 (109-159)||(22913269-22913319)
chr8 (108-196)||(16346140-16346227)
chr8 (110-196)||(12818795-12818880)
chr8 (110-187)||(12820088-12820164)
chr8 (108-192)||(22914178-22914261)
chr8 (156-243)||(11081067-11081154)
chr8 (18-70)||(44769845-44769897)
[»] chr2 (12 HSPs)
chr2 (112-245)||(38593023-38593156)
chr2 (112-245)||(38596619-38596752)
chr2 (112-221)||(10330723-10330831)
chr2 (112-221)||(38594038-38594147)
chr2 (112-221)||(38597634-38597743)
chr2 (112-206)||(371958-372052)
chr2 (110-187)||(33553355-33553431)
chr2 (111-159)||(30178622-30178670)
chr2 (109-187)||(20630660-20630737)
chr2 (112-166)||(370838-370892)
chr2 (108-161)||(30179540-30179593)
chr2 (40-97)||(12364330-12364387)
[»] chr6 (18 HSPs)
chr6 (112-243)||(10673603-10673734)
chr6 (112-219)||(13561296-13561403)
chr6 (112-221)||(13562287-13562396)
chr6 (116-243)||(24318059-24318186)
chr6 (112-221)||(25437800-25437907)
chr6 (136-254)||(10674493-10674611)
chr6 (109-187)||(11724285-11724362)
chr6 (112-221)||(24317066-24317174)
chr6 (109-196)||(1757483-1757569)
chr6 (108-159)||(27107258-27107309)
chr6 (108-159)||(27149064-27149115)
chr6 (110-196)||(14174144-14174229)
chr6 (110-196)||(14178680-14178765)
chr6 (109-161)||(1692149-1692200)
chr6 (147-221)||(18230338-18230412)
chr6 (112-178)||(25439098-25439164)
chr6 (108-196)||(1692969-1693056)
chr6 (183-247)||(4030137-4030201)
[»] scaffold0013 (2 HSPs)
scaffold0013 (109-228)||(27841-27959)
scaffold0013 (112-221)||(32120-32227)
[»] scaffold0009 (2 HSPs)
scaffold0009 (109-159)||(204615-204665)
scaffold0009 (108-196)||(205540-205627)
[»] scaffold0041 (2 HSPs)
scaffold0041 (109-187)||(85065-85142)
scaffold0041 (190-249)||(1193-1252)


Alignment Details
Target: chr1 (Bit Score: 201; Significance: 1e-109; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 9 - 265
Target Start/End: Complemental strand, 9850197 - 9849941
Alignment:
Q  9 gaagaatatgaagatgaggaagaaagtaatttaaattatgtattggtgatacatagttagatccaattgacctcatttttccaacggtcnnnnnnnngtt 108  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||| ||||| ||||||||        |||    
T  9850197 gaagaatatgaagatgaggaagaaagtaatttaaattatgtgttggtgatacatggttagatccaattgacctccttttttcaacggtcttctttttgtt 9850098  T
Q  109 ggatttaaaattaataaaataggatcaaattgatgactaaaacaaatataaaggaccattttgaaacgttcaatagttattggaccaattcgaaaaaagg 208  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |    
T  9850097 ggatttaaaattaataaaataggatcaaattgatgactaaaacaaatataaaggaccattttgaaacgttcaatagttatgggaccaattcgaaaaaaag 9849998  T
Q  209 aattaagttaaggaatcatacgatgaattaagcctaaaataaaataatcaaagtaag 265  Q
    |||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||    
T  9849997 aattaagttaaggaatcatatgatgaattaagcctaaaataaaatagtcaaagtaag 9849941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 112 - 247
Target Start/End: Complemental strand, 18655572 - 18655439
Alignment:
Q  112 tttaaaattaataaaataggatcaaattgatgactaaaacaaatataaaggaccattttgaaacgttcaatagttattggaccaattcgaaaaaaggaat 211  Q
    |||||||||||||||| ||||  |||||||| | ||||||||| |||||  | |||||||||||||| ||||||||  | | |||||  ||| ||  |||    
T  18655572 tttaaaattaataaaaaaggactaaattgatcattaaaacaaagataaataaacattttgaaacgtttaatagttagagaatcaatttaaaataaaaaat 18655473  T
Q  212 taagttaaggaatcatacgatgaattaagcctaaaa 247  Q
    |||||||||  | || ||||| ||||||||||||||    
T  18655472 taagttaag--accaaacgattaattaagcctaaaa 18655439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 109 - 187
Target Start/End: Complemental strand, 9822778 - 9822701
Alignment:
Q  109 ggatttaaaattaataaaataggatcaaattgatgactaaaacaaatataaaggaccattttgaaacgttcaatagtta 187  Q
    |||||||||||||||||||||| | |||||  ||||| |||||||| || ||||||||  |||||||||| ||||||||    
T  9822778 ggatttaaaattaataaaatagaaccaaatcaatgacgaaaacaaagat-aaggaccaaattgaaacgtttaatagtta 9822701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 109 - 187
Target Start/End: Complemental strand, 30743214 - 30743137
Alignment:
Q  109 ggatttaaaattaataaaataggatcaaattgatgactaaaacaaatataaaggaccattttgaaacgttcaatagtta 187  Q
    |||||||||||||||||||| ||| ||||| |||||| |||||||| || ||||||||  ||||||| || ||||||||    
T  30743214 ggatttaaaattaataaaattggaccaaatcgatgacgaaaacaaagat-aaggaccaaattgaaacatttaatagtta 30743137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 109 - 187
Target Start/End: Original strand, 43808510 - 43808587
Alignment:
Q  109 ggatttaaaattaataaaataggatcaaattgatgactaaaacaaatataaaggaccattttgaaacgttcaatagtta 187  Q
    ||||||||||||||||||||| || ||||| |||||| |||||||| || || |||||  |||||||||| ||||||||    
T  43808510 ggatttaaaattaataaaatatgaccaaatcgatgacgaaaacaaagat-aatgaccaaattgaaacgtttaatagtta 43808587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 108 - 196
Target Start/End: Original strand, 21246463 - 21246550
Alignment:
Q  108 tggatttaaaattaataaaataggatcaaattgatgactaaaacaaatataaaggaccattttgaaacgttcaatagttattggaccaa 196  Q
    ||||||| ||||||||||||||||| ||||| |||||| |||||||| || || ||||   |||||||||| ||||||||  |||||||    
T  21246463 tggattttaaattaataaaataggaccaaatcgatgacgaaaacaaagat-aatgaccgaattgaaacgtttaatagttaagggaccaa 21246550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 109 - 193
Target Start/End: Complemental strand, 43807562 - 43807479
Alignment:
Q  109 ggatttaaaattaataaaataggatcaaattgatgactaaaacaaatataaaggaccattttgaaacgttcaatagttattggac 193  Q
    |||||||| ||||||||||| ||||||||| |||||  |||||||| || ||||||||  ||||||| || |||||||| |||||    
T  43807562 ggatttaatattaataaaattggatcaaatcgatgatgaaaacaaagat-aaggaccaaattgaaacatttaatagttaatggac 43807479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 113 - 219
Target Start/End: Complemental strand, 40721909 - 40721802
Alignment:
Q  113 ttaaaattaataaaataggatcaaattgat-gactaaaacaaatataaaggaccattttgaaacgttcaatagttattggaccaattcgaaaaaaggaat 211  Q
    ||||||||||  |||||||| ||||||||  |||| ||||| |||||||||||||  ||||||| || || ||| ||  |||||||| ||||||| ||||    
T  40721909 ttaaaattaacgaaataggaccaaattgaccgacttaaacacatataaaggaccaaattgaaacttttaaaagtaatatgaccaatttgaaaaaaagaat 40721810  T
Q  212 taagttaa 219  Q
    ||| ||||    
T  40721809 taaattaa 40721802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 113 - 219
Target Start/End: Original strand, 40723025 - 40723131
Alignment:
Q  113 ttaaaattaataaaataggatcaaattga-tgactaaaacaaatataaaggaccattttgaaacgttcaatagttattggaccaattcgaaaaaaggaat 211  Q
    ||||||||||| |||||||| |||||||| ||| |  | || |||||||||||||  ||||||| || || |||||| ||| ||||| ||||||| ||||    
T  40723025 ttaaaattaatgaaataggaccaaattgactgattgca-catatataaaggaccaaattgaaacttttaaaagttataggatcaatttgaaaaaaagaat 40723123  T
Q  212 taagttaa 219  Q
    ||||||||    
T  40723124 taagttaa 40723131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 112 - 142
Target Start/End: Original strand, 18656690 - 18656720
Alignment:
Q  112 tttaaaattaataaaataggatcaaattgat 142  Q
    |||||||||||||||||||||||||||||||    
T  18656690 tttaaaattaataaaataggatcaaattgat 18656720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 113 - 166
Target Start/End: Original strand, 49784979 - 49785032
Alignment:
Q  113 ttaaaattaataaaataggatcaaattgatgactaaaacaaatataaaggacca 166  Q
    ||||||||| |||||| |||||||||||  ||| |||||||| |||||||||||    
T  49784979 ttaaaattattaaaattggatcaaattgcggacgaaaacaaagataaaggacca 49785032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 156 - 252
Target Start/End: Original strand, 52439320 - 52439417
Alignment:
Q  156 ataaaggaccattttgaaacgttcaatagttattggaccaattcgaaaaaaggaattaagttaaggaatcatacgatgaattaagcc-taaaataaaa 252  Q
    |||||||| || ||||||||||| ||||||||  ||||||| | ||||| || || |||||||||| | || | |||| |||||||| ||||||||||    
T  52439320 ataaaggatcaatttgaaacgtttaatagttagaggaccaaattgaaaacagaaaataagttaagggaccaaatgatgtattaagccataaaataaaa 52439417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 164; Significance: 1e-87; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 14 - 245
Target Start/End: Complemental strand, 54822601 - 54822370
Alignment:
Q  14 atatgaagatgaggaagaaagtaatttaaattatgtattggtgatacatagttagatccaattgacctcatttttccaacggtcnnnnnnnngttggatt 113  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||| |||||| ||| |||||| |||        ||||||||    
T  54822601 atatgaagatgaggaagaaagtaatttaaattatgtgttggtgatacatggttagatccaatggacctcctttatccaacagtcttctttttgttggatt 54822502  T
Q  114 taaaattaataaaataggatcaaattgatgactaaaacaaatataaaggaccattttgaaacgttcaatagttattggaccaattcgaaaaaaggaatta 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||| ||||||    
T  54822501 taaaattaataaaataggatcaaattgatgactaaaacaaatataaaggaccattttgaaacgttcaatagttatgggaccaattcaaaaaaaagaatta 54822402  T
Q  214 agttaaggaatcatacgatgaattaagcctaa 245  Q
    |||||||| ||||||| |||||||||||||||    
T  54822401 agttaagggatcatacaatgaattaagcctaa 54822370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 9 - 243
Target Start/End: Original strand, 54823146 - 54823381
Alignment:
Q  9 gaagaatatgaagatgaggaagaaagtaatttaaattatgtattggtgatacatagttagatccaattgacctcatttttccaacggtcnnnnnnnngtt 108  Q
    |||||| ||||||||||||||||||  ||| |||||||||| ||||| |||||| |||||||||||| ||||||  || ||||||||||         ||    
T  54823146 gaagaagatgaagatgaggaagaaatcaatataaattatgtgttggtaatacatggttagatccaatggacctccattatccaacggtcttctttttatt 54823245  T
Q  109 ggatttaaaattaataaaataggatcaaattgatgactaaaacaaatataaaggaccattttgaaacgttcaatagttattggaccaattc-gaaaaaag 207  Q
    ||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||| ||||||| ||||||||| ||||||||||  ||||||     
T  54823246 ggatttaaaattaataaaatatgatcaaattgatgactaaaacaaagataaaggaccattttaaaacgtttaatagttatgggaccaattcaaaaaaaaa 54823345  T
Q  208 gaattaagttaaggaatcatacgatgaattaagcct 243  Q
    ||||||||||| || | | || ||| ||||||||||    
T  54823346 gaattaagttatgggaccttatgataaattaagcct 54823381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 112 - 242
Target Start/End: Original strand, 21570414 - 21570544
Alignment:
Q  112 tttaaaattaataaaataggatcaaattgatgactaaaacaaatataaaggaccattttgaaacgttcaatagttattggaccaattcgaaaaaaggaat 211  Q
    |||||||||||||||||||||||||||||||||  |||||||| ||||| |||||  |||||||||| ||||||||  ||||||||||||||||| ||||    
T  21570414 tttaaaattaataaaataggatcaaattgatgatgaaaacaaagataaatgaccaaattgaaacgtttaatagttaggggaccaattcgaaaaaaagaat 21570513  T
Q  212 taagttaaggaatcatacgatgaattaagcc 242  Q
    |||||||||| | || |||||| ||||||||    
T  21570514 taagttaagggaccaaacgatgtattaagcc 21570544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 112 - 221
Target Start/End: Original strand, 31205700 - 31205809
Alignment:
Q  112 tttaaaattaataaaataggatcaaattgatgactaaaacaaatataaaggaccattttgaaacgttcaatagttattggaccaattcgaaaaaaggaat 211  Q
    |||||||||||||||||| || |||||| || | ||||||||| ||||||||||||||||||||||| ||||||||  ||||||||||||||||| ||||    
T  31205700 tttaaaattaataaaatatgaccaaattaataattaaaacaaagataaaggaccattttgaaacgtttaatagttaggggaccaattcgaaaaaaagaat 31205799  T
Q  212 taagttaagg 221  Q
    ||||||||||    
T  31205800 taagttaagg 31205809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 112 - 206
Target Start/End: Complemental strand, 31204679 - 31204585
Alignment:
Q  112 tttaaaattaataaaataggatcaaattgatgactaaaacaaatataaaggaccattttgaaacgttcaatagttattggaccaattcgaaaaaa 206  Q
    ||||||||||||||||||||| ||||||||||| ||||| ||| ||||| ||||||||||||||||| ||||||||  |||||||||||||||||    
T  31204679 tttaaaattaataaaataggaccaaattgatgattaaaataaagataaatgaccattttgaaacgtttaatagttaggggaccaattcgaaaaaa 31204585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 112 - 219
Target Start/End: Original strand, 44219019 - 44219126
Alignment:
Q  112 tttaaaattaataaaataggatcaaattgatgactaaaacaaatataaaggaccattttgaaacgttcaatagttattggaccaattcgaaaaaaggaat 211  Q
    |||||||| |||||||||||| |||||||||||  |||||||| ||||||||||| ||| ||  ||| ||||||||  ||||||||||||||||| ||||    
T  44219019 tttaaaatcaataaaataggaccaaattgatgataaaaacaaagataaaggaccaatttaaagtgtttaatagttaggggaccaattcgaaaaaaagaat 44219118  T
Q  212 taagttaa 219  Q
    ||||||||    
T  44219119 taagttaa 44219126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 112 - 221
Target Start/End: Complemental strand, 21569375 - 21569266
Alignment:
Q  112 tttaaaattaataaaataggatcaaattgatgactaaaacaaatataaaggaccattttgaaacgttcaatagttattggaccaattcgaaaaaaggaat 211  Q
    |||||||||||||||||| ||| |||| |||||  |||||||| ||||| |||||  |||||||||| ||||||||  |||||||||| | |||| ||||    
T  21569375 tttaaaattaataaaatatgattaaatagatgatgaaaacaaagataaatgaccaaattgaaacgtttaatagttaggggaccaattcaataaaaagaat 21569276  T
Q  212 taagttaagg 221  Q
    ||||||||||    
T  21569275 taagttaagg 21569266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 112 - 220
Target Start/End: Original strand, 42698652 - 42698760
Alignment:
Q  112 tttaaaattaataaaataggatcaaattgatgactaaaacaaatataaaggaccattttgaaacgttcaatagttattggaccaattcgaaaaaaggaat 211  Q
    |||||||| |||||||| |||  ||||||||||  |||||||| ||||| |||||  |||||||||| |||| |||   || ||||||||||||| ||||    
T  42698652 tttaaaataaataaaatgggactaaattgatgatgaaaacaaagataaatgaccaaattgaaacgtttaataattaaatgatcaattcgaaaaaaagaat 42698751  T
Q  212 taagttaag 220  Q
    |||||||||    
T  42698752 taagttaag 42698760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 116 - 219
Target Start/End: Complemental strand, 42713584 - 42713481
Alignment:
Q  116 aaattaataaaataggatcaaattgatgactaaaacaaatataaaggaccattttgaaacgttcaatagttattggaccaattcgaaaaaaggaattaag 215  Q
    ||||||||||||||| | |||||||||| | |||||||| |||||  ||||  |||||||| | ||||||||  ||| ||| ||||||||| ||||||||    
T  42713584 aaattaataaaatagaaccaaattgatggcaaaaacaaagataaaaaaccaaattgaaacgcttaatagttaagggatcaaatcgaaaaaaagaattaag 42713485  T
Q  216 ttaa 219  Q
    ||||    
T  42713484 ttaa 42713481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 109 - 196
Target Start/End: Complemental strand, 5417431 - 5417345
Alignment:
Q  109 ggatttaaaattaataaaataggatcaaattgatgactaaaacaaatataaaggaccattttgaaacgttcaatagttattggaccaa 196  Q
    ||||||||||||||||||||| || |||||||||||| |||||||| || ||||| ||  ||||||| || ||||||||  |||||||    
T  5417431 ggatttaaaattaataaaatatgaccaaattgatgacgaaaacaaagat-aaggatcaaattgaaacatttaatagttaagggaccaa 5417345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 109 - 187
Target Start/End: Complemental strand, 26045259 - 26045182
Alignment:
Q  109 ggatttaaaattaataaaataggatcaaattgatgactaaaacaaatataaaggaccattttgaaacgttcaatagtta 187  Q
    |||||||||||||||||||| ||| ||||| |||||| |||||||| || |||||| |  |||||||||| ||||||||    
T  26045259 ggatttaaaattaataaaattggaccaaatcgatgacgaaaacaaagat-aaggactaaattgaaacgtttaatagtta 26045182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 109 - 187
Target Start/End: Original strand, 43709863 - 43709940
Alignment:
Q  109 ggatttaaaattaataaaataggatcaaattgatgactaaaacaaatataaaggaccattttgaaacgttcaatagtta 187  Q
    |||||||||||||||||||| ||  ||||| |||||| |||||||| ||||| |||||  |||||||||| ||||||||    
T  43709863 ggatttaaaattaataaaattggtccaaatcgatgacgaaaacaaagataaa-gaccaaattgaaacgtttaatagtta 43709940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 109 - 187
Target Start/End: Original strand, 47243979 - 47244056
Alignment:
Q  109 ggatttaaaattaataaaataggatcaaattgatgactaaaacaaatataaaggaccattttgaaacgttcaatagtta 187  Q
    ||||||||||||||||||||| || ||||| |||||| |||||||| || ||||||||  |||||| ||| ||||||||    
T  47243979 ggatttaaaattaataaaatatgaccaaatcgatgacgaaaacaaagat-aaggaccaaattgaaatgtttaatagtta 47244056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 110 - 187
Target Start/End: Original strand, 47573634 - 47573710
Alignment:
Q  110 gatttaaaattaataaaataggatcaaattgatgactaaaacaaatataaaggaccattttgaaacgttcaatagtta 187  Q
    |||||||||||||||||||| || ||||| |||||| |||||||| || ||||||||  || ||||||| ||||||||    
T  47573634 gatttaaaattaataaaatatgaccaaatcgatgacaaaaacaaagat-aaggaccaaattaaaacgtttaatagtta 47573710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 109 - 193
Target Start/End: Complemental strand, 43708963 - 43708880
Alignment:
Q  109 ggatttaaaattaataaaataggatcaaattgatgactaaaacaaatataaaggaccattttgaaacgttcaatagttattggac 193  Q
    |||||||||||||||||| | ||| ||||| |||||| |||||||| || ||||||||  ||||||| || |||||||| |||||    
T  43708963 ggatttaaaattaataaatttggaccaaatcgatgacgaaaacaaagat-aaggaccaaattgaaacatttaatagttaatggac 43708880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 109 - 161
Target Start/End: Complemental strand, 47243079 - 47243027
Alignment:
Q  109 ggatttaaaattaataaaataggatcaaattgatgactaaaacaaatataaag 161  Q
    |||||||||||||||||||| ||| ||||| |||||| |||||||| ||||||    
T  47243079 ggatttaaaattaataaaattggaccaaatcgatgacgaaaacaaagataaag 47243027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 109 - 196
Target Start/End: Complemental strand, 11482924 - 11482837
Alignment:
Q  109 ggatttaaaattaataaaataggatcaaattgatgactaaaacaaatataaaggaccattttgaaacgttcaatagttattggaccaa 196  Q
    ||||||||||||| |||||| ||| |||||||||||| |||| ||| |  ||||||||  ||||||| || ||||||||  |||||||    
T  11482924 ggatttaaaattactaaaatcggaccaaattgatgacgaaaaaaaaaaataaggaccaaattgaaacatttaatagttaagggaccaa 11482837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 109 - 159
Target Start/End: Complemental strand, 50497122 - 50497072
Alignment:
Q  109 ggatttaaaattaataaaataggatcaaattgatgactaaaacaaatataa 159  Q
    |||||||||||||||||||| ||| ||||| |||||| |||||||| ||||    
T  50497122 ggatttaaaattaataaaattggaccaaatcgatgacgaaaacaaagataa 50497072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 51 - 97
Target Start/End: Complemental strand, 54372932 - 54372886
Alignment:
Q  51 ttggtgatacatagttagatccaattgacctcatttttccaacggtc 97  Q
    ||||||||||| ||||||||| ||| |||||||||| ||||||||||    
T  54372932 ttggtgatacacagttagatctaatagacctcatttatccaacggtc 54372886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 40 - 97
Target Start/End: Original strand, 20945396 - 20945453
Alignment:
Q  40 taaattatgtattggtgatacatagttagatccaattgacctcatttttccaacggtc 97  Q
    ||||||| || ||||||||||| ||||||||| ||| || ||||||| ||||||||||    
T  20945396 taaattaggtgttggtgatacacagttagatctaatagaactcatttatccaacggtc 20945453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 180 - 224
Target Start/End: Original strand, 17522619 - 17522663
Alignment:
Q  180 aatagttattggaccaattcgaaaaaaggaattaagttaaggaat 224  Q
    |||||||||| ||||||||  |||||| |||||||||||||||||    
T  17522619 aatagttatttgaccaatttaaaaaaaagaattaagttaaggaat 17522663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 94; Significance: 8e-46; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 19 - 251
Target Start/End: Original strand, 50003121 - 50003354
Alignment:
Q  19 aagatgaggaagaaagtaatttaaattatgtattggtgatacatagttagatccaattgacctcatttttccaacggtcnnnnnnnngttggatttaaaa 118  Q
    |||| ||||||||||||||| |||||||||| |||||||||||  ||||||||  ||||||||| ||| ||||||||||           |  |||||||    
T  50003121 aagaagaggaagaaagtaatataaattatgtgttggtgatacaccgttagatctgattgacctcctttatccaacggtcttatttttaaggagtttaaaa 50003220  T
Q  119 ttaataaaataggatcaaattgatgactaaaacaaatataaaggaccattttgaaacgttcaatagttattggaccaattcgaaaaaaggaattaagtta 218  Q
    |||||||||||||| ||||||||||| ||||||||| ||||||||||||||||||||||| ||||||||  |||||||||||||| || |||||||||||    
T  50003221 ttaataaaataggaccaaattgatgattaaaacaaacataaaggaccattttgaaacgtttaatagttaggggaccaattcgaaataaagaattaagtta 50003320  T
Q  219 aggaatcatacgatgaattaagcc-taaaataaa 251  Q
    ||| | || | ||| ||||||||| |||||||||    
T  50003321 agggaccaaatgatcaattaagccttaaaataaa 50003354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 112 - 243
Target Start/End: Complemental strand, 27225558 - 27225427
Alignment:
Q  112 tttaaaattaataaaataggatcaaattgatgactaaaacaaatataaaggaccattttgaaacgttcaatagttattggaccaattcgaaaaaaggaat 211  Q
    |||||||||||||||||||||  ||||||||||| |||||||| |||||| ||||  |||||||||| | ||||||   |||||||||||||||| ||||    
T  27225558 tttaaaattaataaaataggactaaattgatgacgaaaacaaacataaagaaccaaattgaaacgtttattagttaagagaccaattcgaaaaaaagaat 27225459  T
Q  212 taagttaaggaatcatacgatgaattaagcct 243  Q
    ||| |||||||| | |||||| ||||||||||    
T  27225458 taaattaaggaaccgtacgataaattaagcct 27225427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 112 - 221
Target Start/End: Complemental strand, 21247361 - 21247252
Alignment:
Q  112 tttaaaattaataaaataggatcaaattgatgactaaaacaaatataaaggaccattttgaaacgttcaatagttattggaccaattcgaaaaaaggaat 211  Q
    ||||||||||||||||||| | |||| | |||||||||||||| |||| |||||||||||||||||| ||||||||  ||||||||| |||| || ||||    
T  21247361 tttaaaattaataaaatagaaccaaaattatgactaaaacaaagataagggaccattttgaaacgtttaatagttaggggaccaatttgaaataaagaat 21247262  T
Q  212 taagttaagg 221  Q
    ||||||||||    
T  21247261 taagttaagg 21247252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 112 - 247
Target Start/End: Original strand, 21248248 - 21248383
Alignment:
Q  112 tttaaaattaataaaataggatcaaattgatgactaaaacaaatataaaggaccattttgaaacgttcaatagttattggaccaattcgaaaaaaggaat 211  Q
    ||||||||||||||||||||| |||| | |||||||||||||| |||| |||||||||||||||||| ||||||||   || |||||||||| || ||||    
T  21248248 tttaaaattaataaaataggaccaaaataatgactaaaacaaagataagggaccattttgaaacgtttaatagttaggagatcaattcgaaataaagaat 21248347  T
Q  212 taagttaaggaatcatacgatgaattaagcctaaaa 247  Q
    ||| |||||| | || | ||| ||||||||| ||||    
T  21248348 taaattaagggaccaaatgatcaattaagccaaaaa 21248383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 112 - 247
Target Start/End: Original strand, 27226530 - 27226665
Alignment:
Q  112 tttaaaattaataaaataggatcaaattgatgactaaaacaaatataaaggaccattttgaaacgttcaatagttattggaccaattcgaaaaaaggaat 211  Q
    ||||||||||||||||||||| |||||||||||  |||||||| |||||||||||  |||||||||| | || |||  | ||||||||| ||||| ||||    
T  27226530 tttaaaattaataaaataggaccaaattgatgatgaaaacaaacataaaggaccaaattgaaacgtttattatttaaggtaccaattcgcaaaaaagaat 27226629  T
Q  212 taagttaaggaatcatacgatgaattaagcctaaaa 247  Q
    |||||||||| | || | ||| ||||||||||||||    
T  27226630 taagttaagggaccaaatgatcaattaagcctaaaa 27226665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 112 - 197
Target Start/End: Complemental strand, 50002538 - 50002453
Alignment:
Q  112 tttaaaattaataaaataggatcaaattgatgactaaaacaaatataaaggaccattttgaaacgttcaatagttattggaccaat 197  Q
    |||||||||||||||||||||  |||||||||| ||||||||| |||||||||||||| |||||||| ||||||||  ||||||||    
T  50002538 tttaaaattaataaaataggactaaattgatgattaaaacaaacataaaggaccatttcgaaacgtttaatagttaggggaccaat 50002453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 112 - 246
Target Start/End: Original strand, 5411230 - 5411363
Alignment:
Q  112 tttaaaattaataaaataggatcaaattgatgactaaaacaaatataaaggaccattttgaaacgttcaatagttattggaccaattcgaaaaaaggaat 211  Q
    ||||||||||||||||||||| || ||||||| | |||||||| ||||| |||||  || |||| || ||||||||   || ||||| ||||||| ||||    
T  5411230 tttaaaattaataaaataggaccacattgatggcgaaaacaaagataaaagaccaaattaaaacatttaatagtta-aagatcaatttgaaaaaaagaat 5411328  T
Q  212 taagttaaggaatcatacgatgaattaagcctaaa 246  Q
    |||||||||| | || |||||| ||||||||||||    
T  5411329 taagttaagggaccaaacgatgtattaagcctaaa 5411363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 110 - 187
Target Start/End: Original strand, 50765764 - 50765840
Alignment:
Q  110 gatttaaaattaataaaataggatcaaattgatgactaaaacaaatataaaggaccattttgaaacgttcaatagtta 187  Q
    ||||||||||||||||||||| ||||||| |||||| |||||||| || ||||||||  |||||||||| ||||||||    
T  50765764 gatttaaaattaataaaatagaatcaaatcgatgaccaaaacaaagat-aaggaccaaattgaaacgtttaatagtta 50765840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 112 - 166
Target Start/End: Complemental strand, 5409463 - 5409409
Alignment:
Q  112 tttaaaattaataaaataggatcaaattgatgactaaaacaaatataaaggacca 166  Q
    ||||||||||||||||| |||||||||||||||  |||||||| |||||||||||    
T  5409463 tttaaaattaataaaattggatcaaattgatgatgaaaacaaagataaaggacca 5409409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 109 - 159
Target Start/End: Complemental strand, 32999924 - 32999874
Alignment:
Q  109 ggatttaaaattaataaaataggatcaaattgatgactaaaacaaatataa 159  Q
    |||||||||||||||||||||||| |||||||||||| |||||||| ||||    
T  32999924 ggatttaaaattaataaaataggaccaaattgatgacgaaaacaaagataa 32999874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 109 - 187
Target Start/End: Complemental strand, 50150848 - 50150771
Alignment:
Q  109 ggatttaaaattaataaaataggatcaaattgatgactaaaacaaatataaaggaccattttgaaacgttcaatagtta 187  Q
    |||||||||||||||||||||||| |||||||||||| |||||||| |  ||||||||  ||||||| || ||||||||    
T  50150848 ggatttaaaattaataaaataggaccaaattgatgacgaaaacaaaga-caaggaccaaattgaaacatttaatagtta 50150771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 112 - 245
Target Start/End: Original strand, 55387637 - 55387770
Alignment:
Q  112 tttaaaattaataaaataggatcaaattgatgactaaaacaaatataaaggaccattttgaaacgttcaatagttattggaccaattcgaaaaaaggaat 211  Q
    |||||||| ||||||||| || ||||||||||| ||||||||| ||||| || ||| || ||||||| ||||||||    |||||||  ||| || ||||    
T  55387637 tttaaaatcaataaaatatgaccaaattgatgattaaaacaaagataaaagatcatcttaaaacgtttaatagttagaaaaccaatttaaaataaagaat 55387736  T
Q  212 taagttaaggaatcatacgatgaattaagcctaa 245  Q
    |||||||||  | || | ||| ||||||||||||    
T  55387737 taagttaagacaccaaatgatcaattaagcctaa 55387770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 109 - 159
Target Start/End: Complemental strand, 2088969 - 2088919
Alignment:
Q  109 ggatttaaaattaataaaataggatcaaattgatgactaaaacaaatataa 159  Q
    |||||||||||||||||||||||| |||||||||||  |||||||| ||||    
T  2088969 ggatttaaaattaataaaataggaccaaattgatgatgaaaacaaagataa 2088919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 112 - 220
Target Start/End: Complemental strand, 5384546 - 5384437
Alignment:
Q  112 tttaaaattaataaaataggatcaaattgatgactaaaacaaatataaaggaccattttgaaacgttcaatagttattggaccaatt-cgaaaaaaggaa 210  Q
    ||||||||||||||||| ||| ||||||||||   |||||||| ||| |||||||  ||||||||||  ||| |||  |||||||||   |||||| |||    
T  5384546 tttaaaattaataaaattggaccaaattgatgttgaaaacaaagatagaggaccaaattgaaacgttttataattaaaggaccaattaaaaaaaaaagaa 5384447  T
Q  211 ttaagttaag 220  Q
    ||||||||||    
T  5384446 ttaagttaag 5384437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 107 - 187
Target Start/End: Original strand, 33000787 - 33000866
Alignment:
Q  107 ttggatttaaaattaataaaataggatcaaattgatgactaaaacaaatataaaggaccattttgaaacgttcaatagtta 187  Q
    |||||||| |||||||||||||||||  |||| |||||| ||||||||  | ||||||||  |||||||||| ||||||||    
T  33000787 ttggatttcaaattaataaaataggactaaatcgatgaccaaaacaaaggt-aaggaccaaattgaaacgtttaatagtta 33000866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 113 - 187
Target Start/End: Complemental strand, 39530918 - 39530845
Alignment:
Q  113 ttaaaattaataaaataggatcaaattgatgactaaaacaaatataaaggaccattttgaaacgttcaatagtta 187  Q
    ||||||||||||||||| || ||||| |||||| |||||||| || ||||| ||  |||||||||| ||||||||    
T  39530918 ttaaaattaataaaatatgaccaaatcgatgacgaaaacaaagat-aaggatcaaattgaaacgtttaatagtta 39530845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 94
Target Start/End: Original strand, 14206677 - 14206754
Alignment:
Q  18 gaagatgaggaagaaa-gtaatttaaattatgtattggtgatacatagttagatccaattgacctcatttttccaacg 94  Q
    |||||||| ||||||| ||||  |||||||  ||||||||||||| |||||||||  || |||||||||| |||||||    
T  14206677 gaagatgatgaagaaaagtaaaataaattagatattggtgatacacagttagatctgatagacctcatttatccaacg 14206754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 94
Target Start/End: Original strand, 14214425 - 14214502
Alignment:
Q  18 gaagatgaggaagaaa-gtaatttaaattatgtattggtgatacatagttagatccaattgacctcatttttccaacg 94  Q
    |||||||| ||||||| ||||  |||||||  ||||||||||||| |||||||||  || |||||||||| |||||||    
T  14214425 gaagatgatgaagaaaagtaaaataaattagatattggtgatacacagttagatctgatagacctcatttatccaacg 14214502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 108 - 196
Target Start/End: Complemental strand, 45730765 - 45730678
Alignment:
Q  108 tggatttaaaattaataaaataggatcaaattgatgactaaaacaaatataaaggaccattttgaaacgttcaatagttattggaccaa 196  Q
    ||||||| |||||||||||||||||  |||| |||||  |||||||| || |||| |||  |||||||||| ||||||||  |||||||    
T  45730765 tggatttcaaattaataaaataggactaaatcgatgatgaaaacaaagat-aaggtccaaattgaaacgtttaatagttaagggaccaa 45730678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 109 - 161
Target Start/End: Complemental strand, 53901696 - 53901644
Alignment:
Q  109 ggatttaaaattaataaaataggatcaaattgatgactaaaacaaatataaag 161  Q
    |||||||||||||||||||  ||| ||||| |||||| |||||||| ||||||    
T  53901696 ggatttaaaattaataaaagtggaccaaatcgatgacgaaaacaaagataaag 53901644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 82; Significance: 1e-38; HSPs: 25)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 112 - 245
Target Start/End: Original strand, 43704443 - 43704576
Alignment:
Q  112 tttaaaattaataaaataggatcaaattgatgactaaaacaaatataaaggaccattttgaaacgttcaatagttattggaccaattcgaaaaaaggaat 211  Q
    |||||||||||||||||||||| ||| |||||||||||||||| ||||||||||||||||||||||| ||||||||  |||||||||||||||||  |||    
T  43704443 tttaaaattaataaaataggattaaaatgatgactaaaacaaagataaaggaccattttgaaacgtttaatagttaggggaccaattcgaaaaaaataat 43704542  T
Q  212 taagttaaggaatcatacgatgaattaagcctaa 245  Q
    |||||||||| | || | ||| ||||||||||||    
T  43704543 taagttaagggaccaaatgatcaattaagcctaa 43704576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 9 - 243
Target Start/End: Original strand, 36584793 - 36585027
Alignment:
Q  9 gaagaatatgaagatgaggaagaaagtaatttaaattatgtattggtgatacatagttagatccaattgacctcatttttccaacggtcnnnnnnnngtt 108  Q
    |||||| | ||||| ||||||||||| ||| |||||||||| |||||||| ||   ||||||  ||| |||||| ||| ||||||||||               
T  36584793 gaagaagaggaagaagaggaagaaagcaatataaattatgtgttggtgatccactcttagatataatggacctcctttatccaacggtcttcgttttaag 36584892  T
Q  109 ggatttaaaattaataaaataggatcaaattgatgactaaaacaaatataaaggaccattttgaaacgttcaatagttattggaccaattcgaaaaaagg 208  Q
    || |||||||||||||||||| || ||||||||||||||||| ||| ||||||||||||||||||| ||| ||||||||  ||||||||||||||||| |    
T  36584893 ggctttaaaattaataaaatatgaccaaattgatgactaaaataaagataaaggaccattttgaaatgtttaatagttaggggaccaattcgaaaaaaag 36584992  T
Q  209 aattaagttaaggaatcatacgatgaattaagcct 243  Q
    ||||||||||||| | || | ||| ||||||||||    
T  36584993 aattaagttaagggaccaaatgatcaattaagcct 36585027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 112 - 219
Target Start/End: Original strand, 35045885 - 35045992
Alignment:
Q  112 tttaaaattaataaaataggatcaaattgatgactaaaacaaatataaaggaccattttgaaacgttcaatagttattggaccaattcgaaaaaaggaat 211  Q
    ||||||||||||||||||||||||||||||||| ||||||||| ||||| ||||||||||||||||| ||||||||   ||||||||||||| || ||||    
T  35045885 tttaaaattaataaaataggatcaaattgatgattaaaacaaagataaatgaccattttgaaacgtttaatagttagaagaccaattcgaaataaagaat 35045984  T
Q  212 taagttaa 219  Q
    ||||||||    
T  35045985 taagttaa 35045992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 25 - 243
Target Start/End: Complemental strand, 40321281 - 40321063
Alignment:
Q  25 aggaagaaagtaatttaaattatgtattggtgatacatagttagatccaattgacctcatttttccaacggtcnnnnnnnngttggatttaaaattaata 124  Q
    |||||||||| ||| |||||||||| |||||||||||  |||||||| ||| |||||| ||| ||||||||||          ||  |||||||||||||    
T  40321281 aggaagaaagcaatataaattatgtgttggtgatacactgttagatctaatggacctcctttatccaacggtcttctttttaatgattttaaaattaata 40321182  T
Q  125 aaataggatcaaattgatgactaaaacaaatataaaggaccattttgaaacgttcaatagttattggaccaattcgaaaaaaggaattaagttaaggaat 224  Q
    ||| |||  ||||||||||| ||||||||| |||||||| |||||||||||||| ||||||||  | |||||||  ||| || ||||||||||||||||     
T  40321181 aaaaaggcccaaattgatgattaaaacaaagataaaggatcattttgaaacgtttaatagttaaggaaccaatttaaaataaagaattaagttaaggaac 40321082  T
Q  225 catacgatgaattaagcct 243  Q
    || || || ||||||||||    
T  40321081 caaacaattaattaagcct 40321063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 16 - 219
Target Start/End: Original strand, 42521153 - 42521357
Alignment:
Q  16 atgaagatgaggaagaaagtaatttaaattatgtattggtgatacatagttagatccaattgacctcatttttccaacggtcnnnnnnnngttggattta 115  Q
    ||||||| |||||||||||  || ||| |||||| |||||||||||  ||||||||| || |||||| ||| ||||||||||           |  ||||    
T  42521153 atgaagaagaggaagaaagcgatataagttatgtgttggtgatacactgttagatccgatggacctcctttatccaacggtcttatttttaaggatttta 42521252  T
Q  116 aaattaataaaataggatcaaattgatgactaaaacaaatataaaggaccattttgaaacgttcaatagtta-ttggaccaattcgaaaaaaggaattaa 214  Q
    ||||| ||||||||||| |||||||||||||||||||||  || ||||||||||||||||||| |||| |||   ||||||||||||||||| |||||||    
T  42521253 aaattgataaaataggaccaaattgatgactaaaacaaaggtagaggaccattttgaaacgtttaataattagggggaccaattcgaaaaaaagaattaa 42521352  T
Q  215 gttaa 219  Q
    |||||    
T  42521353 gttaa 42521357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 112 - 240
Target Start/End: Original strand, 47536841 - 47536969
Alignment:
Q  112 tttaaaattaataaaataggatcaaattgatgactaaaacaaatataaaggaccattttgaaacgttcaatagttattggaccaattcgaaaaaaggaat 211  Q
    |||||||| |||||||||||| |||||||||||  |||||||| ||||||||||| ||| ||  ||| ||||||||  ||||||||||||||||| ||||    
T  47536841 tttaaaatcaataaaataggaccaaattgatgataaaaacaaagataaaggaccaatttaaagtgtttaatagttaggggaccaattcgaaaaaaagaat 47536940  T
Q  212 taagttaaggaatcatacgatgaattaag 240  Q
    |||||||||| | || |||||| ||||||    
T  47536941 taagttaagggaccaaacgatgtattaag 47536969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 112 - 221
Target Start/End: Complemental strand, 47535784 - 47535675
Alignment:
Q  112 tttaaaattaataaaataggatcaaattgatgactaaaacaaatataaaggaccattttgaaacgttcaatagttattggaccaattcgaaaaaaggaat 211  Q
    ||||||||||||||||||||| |||||||||||  |||||||| |||||||||||  |||||||||| ||||||||  |||| |||| ||||||| ||||    
T  47535784 tttaaaattaataaaataggaccaaattgatgataaaaacaaagataaaggaccaaattgaaacgtttaatagttaggggactaatttgaaaaaaagaat 47535685  T
Q  212 taagttaagg 221  Q
    ||| ||||||    
T  47535684 taaattaagg 47535675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 40 - 221
Target Start/End: Complemental strand, 42520418 - 42520239
Alignment:
Q  40 taaattatgtattggtgatacatagttagatccaattgacctcatttttccaacggtcnnnnnnnngttggatttaaaattaataaaataggatcaaatt 139  Q
    |||||||||| |||||||||||  ||||||||  || |||||| ||| ||||||||||          ||| ||||||||| |||||||| ||  |||||    
T  42520418 taaattatgtgttggtgatacaccgttagatctgatagacctcctttatccaacggtctactttttaatgggtttaaaattgataaaatatgacaaaatt 42520319  T
Q  140 gatgactaaaacaaatataaaggaccattttgaaacgttcaatagttattggaccaattcgaaaaaaggaattaagttaagg 221  Q
    ||||||||||||||| ||| ||||||| ||||||||||| |||| |||  |||||||||||||||||  |||||||||||||    
T  42520318 gatgactaaaacaaagatacaggacca-tttgaaacgtttaatatttaggggaccaattcgaaaaaa-aaattaagttaagg 42520239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 18 - 174
Target Start/End: Original strand, 40322132 - 40322288
Alignment:
Q  18 gaagatgaggaagaaagtaatttaaattatgtattggtgatacatagttagatccaattgacctcatttttccaacggtcnnnnnnnngttggatttaaa 117  Q
    ||||| ||||| ||||  |||||||||||||| |||||||||||| ||||||||| || |||||| ||| |||||  |||           |  ||||||    
T  40322132 gaagaagaggaggaaaacaatttaaattatgtgttggtgatacatcgttagatccgatggacctcctttatccaattgtcttctttttaaggagtttaaa 40322231  T
Q  118 attaataaaataggatcaaattgatgactaaaacaaatataaaggaccattttgaaa 174  Q
    ||||||||||||||||||||||||||| ||||||||| ||||| |||||||||||||    
T  40322232 attaataaaataggatcaaattgatgattaaaacaaagataaaagaccattttgaaa 40322288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 108 - 196
Target Start/End: Complemental strand, 33070733 - 33070646
Alignment:
Q  108 tggatttaaaattaataaaataggatcaaattgatgactaaaacaaatataaaggaccattttgaaacgttcaatagttattggaccaa 196  Q
    |||||||||||||||||||||| ||||||||||||||| |||||||| ||||| |||||  |||||||||| ||||||||  |||||||    
T  33070733 tggatttaaaattaataaaatatgatcaaattgatgacaaaaacaaagataaa-gaccaaattgaaacgtttaatagttaagggaccaa 33070646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 112 - 243
Target Start/End: Complemental strand, 35044745 - 35044613
Alignment:
Q  112 tttaaaattaataaaatag-gatcaaattgatgactaaaacaaatataaaggaccattttgaaacgttcaatagttattggaccaattcgaaaaaaggaa 210  Q
    |||||||||||||||| |  || ||||||||||| ||||||||| |||||||| |||||||||||||| ||||||||  | |||||||  ||| || |||    
T  35044745 tttaaaattaataaaaaaatgaccaaattgatgattaaaacaaagataaaggatcattttgaaacgtttaatagttagggaaccaatttaaaataaagaa 35044646  T
Q  211 ttaagttaaggaatcatacgatgaattaagcct 243  Q
    ||||||||||| | || || || ||||||||||    
T  35044645 ttaagttaagggaccaaacaattaattaagcct 35044613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 18 - 243
Target Start/End: Complemental strand, 43703272 - 43703045
Alignment:
Q  18 gaagatgaggaagaaagtaatttaaattatgtattggtgatacatagttagatccaattgacctcatttttccaacggtcnnnnnnnngttggatttaaa 117  Q
    ||||| ||||||||||  ||| |||||||||| |||||||||||  ||||||||| ||  ||||| ||| ||||||||||             |||||||    
T  43703272 gaagaagaggaagaaaacaatataaattatgtgttggtgatacaccgttagatccgatgcacctcctttatccaacggtcttctttttaagaaatttaaa 43703173  T
Q  118 attaataaaataggatcaaattgatgactaaaacaaatataaaggaccattttgaaacgttcaatagttattggaccaattcgaa--aaaaggaattaag 215  Q
    ||||||||||||| | |||||||||||  ||| || | ||||| ||||||||| |||| || ||||||||  |||||||||||||  |||| ||||||||    
T  43703172 attaataaaatagtaccaaattgatgatgaaagcatagataaaagaccattttaaaacatttaatagttaggggaccaattcgaaaaaaaaagaattaag 43703073  T
Q  216 ttaaggaatcatacgatgaattaagcct 243  Q
    |||||| | || | ||| ||||||||||    
T  43703072 ttaagggaccaaatgatcaattaagcct 43703045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 9 - 221
Target Start/End: Complemental strand, 36584086 - 36583872
Alignment:
Q  9 gaagaatatgaagatgaggaagaaagtaatttaaattatgtattggtgatacatagttagatccaattgacctcatttttccaacggtcnnnnnnnngtt 108  Q
    |||||| ||||||| |||||||| || ||| |||||||||| ||| |||||||  ||||||||| || || ||| ||| |||||| |||               
T  36584086 gaagaagatgaagaagaggaagagagaaatataaattatgtgttgatgatacactgttagatccgatagatctcttttatccaacagtcttctttttaag 36583987  T
Q  109 ggatttaaaattaataaaatagg--atcaaattgatgactaaaacaaatataaaggaccattttgaaacgttcaatagttattggaccaattcgaaaaaa 206  Q
    || |||||||||||||||||||   | |||||||||||||||| ||||  ||||| |  ||||| ||| ||| ||||||||  | |||||||| ||||||    
T  36583986 gggtttaaaattaataaaatagagaaccaaattgatgactaaatcaaagctaaagaattattttaaaatgtttaatagttagagaaccaattcaaaaaaa 36583887  T
Q  207 ggaattaagttaagg 221  Q
    |||||||||||||||    
T  36583886 ggaattaagttaagg 36583872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 112 - 196
Target Start/End: Original strand, 23153621 - 23153705
Alignment:
Q  112 tttaaaattaataaaataggatcaaattgatgactaaaacaaatataaaggaccattttgaaacgttcaatagttattggaccaa 196  Q
    |||||||||||||||||| ||| ||||||||||  |||||||| ||||| |||||  |||||||||| ||||||||  |||||||    
T  23153621 tttaaaattaataaaatatgattaaattgatgataaaaacaaagataaatgaccaaattgaaacgtttaatagttaggggaccaa 23153705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 109 - 196
Target Start/End: Original strand, 47537029 - 47537115
Alignment:
Q  109 ggatttaaaattaataaaataggatcaaattgatgactaaaacaaatataaaggaccattttgaaacgttcaatagttattggaccaa 196  Q
    |||||||||||||||||||||||| | |||||||||| |||| ||| || ||||||||  ||||||| || ||||||||  |||||||    
T  47537029 ggatttaaaattaataaaataggaccgaattgatgacgaaaataaagat-aaggaccaaattgaaacatttaatagttaagggaccaa 47537115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 115 - 248
Target Start/End: Complemental strand, 16955814 - 16955681
Alignment:
Q  115 aaaattaataaaataggatcaaattgat-gactaaaacaaatataaaggaccattttgaaacgttcaatagttattggaccaattcgaaaaaaggaatta 213  Q
    |||| |||| |||||||||||| ||||| ||  |||||||| ||||| |||||  |||||||||| ||||| ||  | ||||||| ||||||| ||||||    
T  16955814 aaaaataatgaaataggatcaa-ttgatcgaggaaaacaaagataaatgaccaaattgaaacgtttaatagctagggaaccaatttgaaaaaaagaatta 16955716  T
Q  214 agttaaggaatcatacgatgaattaagcctaaaat 248  Q
    |||||||| | || | ||| ||||||||| |||||    
T  16955715 agttaagggaccagatgatcaattaagccaaaaat 16955681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 147 - 241
Target Start/End: Original strand, 16957432 - 16957526
Alignment:
Q  147 aaaacaaatataaaggaccattttgaaacgttcaatagttattggaccaattcgaaaaaaggaattaagttaaggaatcatacgatgaattaagc 241  Q
    |||||||| |||||||||||  |||||||||| ||||||||  | | ||||| ||||||| |||||||||||||  |||| | ||| ||||||||    
T  16957432 aaaacaaaaataaaggaccaaattgaaacgtttaatagttagagaatcaatttgaaaaaaagaattaagttaagagatcaaatgatcaattaagc 16957526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 109 - 187
Target Start/End: Complemental strand, 40881218 - 40881141
Alignment:
Q  109 ggatttaaaattaataaaataggatcaaattgatgactaaaacaaatataaaggaccattttgaaacgttcaatagtta 187  Q
    ||||||||||||||||||||| || |||||||||||| |||| ||| || ||||||||  |||||||| | ||||||||    
T  40881218 ggatttaaaattaataaaatatgaccaaattgatgacaaaaataaagat-aaggaccaaattgaaacggttaatagtta 40881141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 112 - 174
Target Start/End: Original strand, 29103301 - 29103365
Alignment:
Q  112 tttaaaattaataaaataggatcaaattgat--gactaaaacaaatataaaggaccattttgaaa 174  Q
    |||||||||||||||||||||  ||||||||  |||||| ||||| ||||||||| |||||||||    
T  29103301 tttaaaattaataaaataggactaaattgatgagactaagacaaagataaaggactattttgaaa 29103365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 109 - 145
Target Start/End: Original strand, 29345068 - 29345104
Alignment:
Q  109 ggatttaaaattaataaaataggatcaaattgatgac 145  Q
    ||||||||||||||||||||| |||||||||||||||    
T  29345068 ggatttaaaattaataaaatacgatcaaattgatgac 29345104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 108 - 183
Target Start/End: Original strand, 37783635 - 37783709
Alignment:
Q  108 tggatttaaaattaataaaataggatcaaattgatgactaaaacaaatataaaggaccattttgaaacgttcaata 183  Q
    ||||||| ||||||||||||||||| ||| | |||||| |||||||| ||||| |||||  |||||||||| ||||    
T  37783635 tggatttcaaattaataaaataggaccaactcgatgacgaaaacaaagataaa-gaccaaattgaaacgtttaata 37783709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 96
Target Start/End: Original strand, 35045791 - 35045869
Alignment:
Q  18 gaagatgaggaagaaagtaatttaaattatgtattggtgatacatagttagatccaattgacctcatttttccaacggt 96  Q
    ||||| ||||| ||||  ||| |||||||||| |||||||||||| ||||||||| || || ||| ||| |||||||||    
T  35045791 gaagaagaggaggaaaacaatataaattatgtgttggtgatacatcgttagatccgatggatctcctttatccaacggt 35045869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 109 - 187
Target Start/End: Complemental strand, 37782084 - 37782007
Alignment:
Q  109 ggatttaaaattaataaaataggatcaaattgatgactaaaacaaatataaaggaccattttgaaacgttcaatagtta 187  Q
    |||||||||||||||||||||||| || ||| || || |||||||| || ||||||||  ||||||| || ||||||||    
T  37782084 ggatttaaaattaataaaataggaccatatttatcacgaaaacaaagat-aaggaccaaattgaaacatttaatagtta 37782007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 169 - 221
Target Start/End: Complemental strand, 25734835 - 25734784
Alignment:
Q  169 ttgaaacgttcaatagttattggaccaattcgaaaaaaggaattaagttaagg 221  Q
    |||||| ||| ||||||||  ||||||||||||||||| ||||||||||||||    
T  25734835 ttgaaatgtttaatagttaagggaccaattcgaaaaaa-gaattaagttaagg 25734784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 113 - 141
Target Start/End: Complemental strand, 29657113 - 29657085
Alignment:
Q  113 ttaaaattaataaaataggatcaaattga 141  Q
    |||||||||||||||||||||||||||||    
T  29657113 ttaaaattaataaaataggatcaaattga 29657085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 82; Significance: 1e-38; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 112 - 221
Target Start/End: Original strand, 39051663 - 39051772
Alignment:
Q  112 tttaaaattaataaaataggatcaaattgatgactaaaacaaatataaaggaccattttgaaacgttcaatagttattggaccaattcgaaaaaaggaat 211  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| || ||||||||   |||||||||||||||| ||||    
T  39051663 tttaaaattaataaaataggatcaaattgatgactaaaacaaagataaaggaccattttgaaacatttaatagttaagagaccaattcgaaaaaaagaat 39051762  T
Q  212 taagttaagg 221  Q
    ||||||||||    
T  39051763 taagttaagg 39051772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 112 - 220
Target Start/End: Original strand, 38603741 - 38603849
Alignment:
Q  112 tttaaaattaataaaataggatcaaattgatgactaaaacaaatataaaggaccattttgaaacgttcaatagttattggaccaattcgaaaaaaggaat 211  Q
    ||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||| ||| ||||||||   |||||||||||||||| ||||    
T  38603741 tttaaaattaataaaataggaccaaattgatgactaaaacaaagataaaggaccattttgaaaagtttaatagttaagagaccaattcgaaaaaaagaat 38603840  T
Q  212 taagttaag 220  Q
    |||||||||    
T  38603841 taagttaag 38603849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 112 - 241
Target Start/End: Complemental strand, 5163785 - 5163656
Alignment:
Q  112 tttaaaattaataaaataggatcaaattgatgactaaaacaaatataaaggaccattttgaaacgttcaatagttattggaccaattcgaaaaaaggaat 211  Q
    |||||||||||||||||| || ||||||||| | ||||||||| |||||||| ||||||||||| || ||||||||  ||||||||||||||||| ||||    
T  5163785 tttaaaattaataaaatatgaccaaattgataattaaaacaaagataaaggatcattttgaaacatttaatagttaggggaccaattcgaaaaaaagaat 5163686  T
Q  212 taagttaaggaatcatacgatgaattaagc 241  Q
    |||||||||| |||| | ||| ||||||||    
T  5163685 taagttaagggatcaaatgattaattaagc 5163656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 112 - 244
Target Start/End: Complemental strand, 39050813 - 39050681
Alignment:
Q  112 tttaaaattaataaaataggatcaaattgatgactaaaacaaatataaaggaccattttgaaacgttcaatagttattggaccaattcgaaaaaaggaat 211  Q
    |||||||||||||||||| || |||||| |||||||||| ||| ||||||||||||||||||||||| ||||||||  |||||||||  |||||| ||||    
T  39050813 tttaaaattaataaaatatgaccaaatttatgactaaaataaagataaaggaccattttgaaacgtttaatagttaagggaccaatttaaaaaaaagaat 39050714  T
Q  212 taagttaaggaatcatacgatgaattaagccta 244  Q
    ||||||||||  ||| | ||| |||||||||||    
T  39050713 taagttaaggggtcaaatgattaattaagccta 39050681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 112 - 243
Target Start/End: Complemental strand, 42962148 - 42962017
Alignment:
Q  112 tttaaaattaataaaataggatcaaattgatgactaaaacaaatataaaggaccattttgaaacgttcaatagttattggaccaattcgaaaaaaggaat 211  Q
    ||||||||||||||||||||| |||||||||||  |||||||| ||||||||||| ||| || |||| ||||||||  ||||||||||||||||| ||||    
T  42962148 tttaaaattaataaaataggaccaaattgatgatgaaaacaaagataaaggaccaatttaaagcgtttaatagttaggggaccaattcgaaaaaaagaat 42962049  T
Q  212 taagttaaggaatcatacgatgaattaagcct 243  Q
    |||||||||| |  | |||||| |||||||||    
T  42962048 taagttaagggacaaaacgatgtattaagcct 42962017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 18 - 247
Target Start/End: Original strand, 8359311 - 8359540
Alignment:
Q  18 gaagatgaggaagaaagtaatttaaattatgtattggtgatacatagttagatccaattgacctcatttttccaacggtcnnnnnnnngttggatttaaa 117  Q
    ||||| ||||||||||| ||| |||||||||| |||||||||||  |||| |||| |  |||||| ||| ||||||| ||           |||||||||    
T  8359311 gaagaagaggaagaaagcaatataaattatgtgttggtgatacaccgttaaatccgacggacctcctttatccaacgatcttctttttaagggatttaaa 8359410  T
Q  118 attaataaaataggatcaaattgatgactaaaacaaatataaaggaccattttgaaacgttcaatagttattggaccaattcgaaaaaaggaattaagtt 217  Q
    ||| ||||||||||| |||| |||||||||||||||| ||||| ||||||||| |||| || ||||||||  ||||| |||||||| ||  |||||||||    
T  8359411 atttataaaataggaccaaaatgatgactaaaacaaagataaaagaccattttaaaacttttaatagttaggggaccgattcgaaataaataattaagtt 8359510  T
Q  218 aaggaatcatacgatgaattaagcctaaaa 247  Q
    |||| | || | ||| ||||||||| ||||    
T  8359511 aagggaccaaatgattaattaagccaaaaa 8359540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 112 - 243
Target Start/End: Original strand, 42963206 - 42963337
Alignment:
Q  112 tttaaaattaataaaataggatcaaattgatgactaaaacaaatataaaggaccattttgaaacgttcaatagttattggaccaattcgaaaaaaggaat 211  Q
    |||||||||||||||||||||| ||||||||||  |||||||| ||||| |||||  |||||||||| ||||||||  ||||||||| ||||||| ||||    
T  42963206 tttaaaattaataaaataggattaaattgatgatgaaaacaaagataaatgaccaaattgaaacgtttaatagttagaggaccaatttgaaaaaaagaat 42963305  T
Q  212 taagttaaggaatcatacgatgaattaagcct 243  Q
    | | |||||| | || |||||| |||||||||    
T  42963306 tcaattaagggaccaaacgatgtattaagcct 42963337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 111 - 239
Target Start/End: Complemental strand, 8358294 - 8358166
Alignment:
Q  111 atttaaaattaataaaataggatcaaattgatgactaaaacaaatataaaggaccattttgaaacgttcaatagttattggaccaattcgaaaaaaggaa 210  Q
    ||||||||||||||||||| || |||| |||||||||||||||| ||||| ||||||||| ||||||| |||| |||  ||| |||||| ||| || |||    
T  8358294 atttaaaattaataaaatatgaccaaaatgatgactaaaacaaagataaaagaccattttaaaacgtttaataattaggggatcaattcaaaataaagaa 8358195  T
Q  211 ttaagttaaggaatcatacgatgaattaa 239  Q
    ||||||||||| |||| | ||| ||||||    
T  8358194 ttaagttaagggatcaaatgatcaattaa 8358166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 112 - 223
Target Start/End: Complemental strand, 301485 - 301376
Alignment:
Q  112 tttaaaattaataaaataggatcaaattgatgactaaaacaaatataaaggaccattttgaaacgttcaatagttattggaccaattcgaaaaaaggaat 211  Q
    |||||||||||||||||||||||||||||||| |||||||||| | ||| || ||||||  |||||| ||||||||  ||| |||||||||| ||  |||    
T  301485 tttaaaattaataaaataggatcaaattgatggctaaaacaaagagaaaagatcattttataacgtttaatagttagaggatcaattcgaaataa--aat 301388  T
Q  212 taagttaaggaa 223  Q
    ||||||||||||    
T  301387 taagttaaggaa 301376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 109 - 196
Target Start/End: Original strand, 11907150 - 11907236
Alignment:
Q  109 ggatttaaaattaataaaataggatcaaattgatgactaaaacaaatataaaggaccattttgaaacgttcaatagttattggaccaa 196  Q
    ||||||||||||||||||||| || |||||||||||| |||||||| || ||||||||  ||||||| || ||||||||  |||||||    
T  11907150 ggatttaaaattaataaaatatgaccaaattgatgacgaaaacaaagat-aaggaccaaattgaaacatttaatagttaagggaccaa 11907236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 112 - 220
Target Start/End: Complemental strand, 38602788 - 38602679
Alignment:
Q  112 tttaaaattaataaaataggatcaaattgatgactaaaa-caaatataaaggaccattttgaaacgttcaatagttattggaccaattcgaaaaaaggaa 210  Q
    |||||||||||||||||| || |||||| ||||||||||  ||| ||| ||||||||||| ||||||| ||||||||  || | |||| |||| || |||    
T  38602788 tttaaaattaataaaatatgaccaaatttatgactaaaataaaagatagaggaccattttaaaacgtttaatagttaaggggctaatttgaaacaaagaa 38602689  T
Q  211 ttaagttaag 220  Q
    |||| |||||    
T  38602688 ttaatttaag 38602679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 109 - 159
Target Start/End: Original strand, 39135637 - 39135687
Alignment:
Q  109 ggatttaaaattaataaaataggatcaaattgatgactaaaacaaatataa 159  Q
    |||||||||||||||||||||||| |||||||||||  |||||||| ||||    
T  39135637 ggatttaaaattaataaaataggaccaaattgatgaggaaaacaaagataa 39135687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 148 - 220
Target Start/End: Complemental strand, 30673408 - 30673336
Alignment:
Q  148 aaacaaatataaaggaccattttgaaacgttcaatagttattggaccaattcgaaaaaaggaattaagttaag 220  Q
    ||||| ||||||||||||| ||||| || || || |||||  |||||||||| |||||| |||||||||||||    
T  30673408 aaacacatataaaggaccaatttgagacttttaagagttacaggaccaattcaaaaaaaagaattaagttaag 30673336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 109 - 196
Target Start/End: Complemental strand, 23679274 - 23679188
Alignment:
Q  109 ggatttaaaattaataaaataggatcaaattgatgactaaaacaaatataaaggaccattttgaaacgttcaatagttattggaccaa 196  Q
    |||||||| ||||||||||||||||||||| |||||| |||| ||| || ||| || |  |||||||||| ||||||||  |||||||    
T  23679274 ggatttaatattaataaaataggatcaaatcgatgacgaaaataaagat-aagaactaaattgaaacgtttaatagttaagggaccaa 23679188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 109 - 196
Target Start/End: Original strand, 23855538 - 23855624
Alignment:
Q  109 ggatttaaaattaataaaataggatcaaattgatgactaaaacaaatataaaggaccattttgaaacgttcaatagttattggaccaa 196  Q
    |||||||| ||||||||||||||||||||| |||||| |||| ||| || ||| || |  |||||||||| ||||||||  |||||||    
T  23855538 ggatttaatattaataaaataggatcaaatcgatgacgaaaataaagat-aagaactaaattgaaacgtttaatagttaagggaccaa 23855624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 109 - 196
Target Start/End: Complemental strand, 39134794 - 39134708
Alignment:
Q  109 ggatttaaaattaataaaataggatcaaattgatgactaaaacaaatataaaggaccattttgaaacgttcaatagttattggaccaa 196  Q
    |||||| ||||||||||||||| | |||||||||| | |||||||| || ||| ||||  |||||||||| ||||||||  |||||||    
T  39134794 ggatttcaaattaataaaatagcaccaaattgatgtcgaaaacaaagat-aagaaccaaattgaaacgtttaatagttaagggaccaa 39134708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 109 - 159
Target Start/End: Original strand, 24071432 - 24071482
Alignment:
Q  109 ggatttaaaattaataaaataggatcaaattgatgactaaaacaaatataa 159  Q
    |||||||||||||||||||| ||| ||||| |||||| |||||||| ||||    
T  24071432 ggatttaaaattaataaaattggaccaaatggatgacgaaaacaaagataa 24071482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 79; Significance: 7e-37; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 11 - 221
Target Start/End: Original strand, 44770504 - 44770714
Alignment:
Q  11 agaatatgaagatgaggaagaaagtaatttaaattatgtattggtgatacatagttagatccaattgacctcatttttccaacggtcnnnnnnnngttgg 110  Q
    |||| ||||||| |||||||| || ||| |||||||||| | ||| |||||  ||||||||| || |||||||||| ||||||||||           ||    
T  44770504 agaagatgaagaagaggaagagagaaatataaattatgtgtcggttatacactgttagatccgatagacctcatttatccaacggtcttctttttaaggg 44770603  T
Q  111 atttaaaattaataaaataggatcaaattgatgactaaaacaaatataaaggaccattttgaaacgttcaatagttattggaccaattcgaaaaaaggaa 210  Q
     |||||||||||||||||||||||||||||||||||||||||||  |||||||||||||| |||| || ||||||||  ||||||||||| ||||| |||    
T  44770604 gtttaaaattaataaaataggatcaaattgatgactaaaacaaagctaaaggaccattttaaaacatttaatagttagaggaccaattcgtaaaaaagaa 44770703  T
Q  211 ttaagttaagg 221  Q
    |||| ||||||    
T  44770704 ttaaattaagg 44770714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 112 - 221
Target Start/End: Original strand, 43415959 - 43416068
Alignment:
Q  112 tttaaaattaataaaataggatcaaattgatgactaaaacaaatataaaggaccattttgaaacgttcaatagttattggaccaattcgaaaaaaggaat 211  Q
    ||||||||||||||||| |||  ||| |||||||||||||||| ||||| ||||||||||||||||| ||||||||  ||||||||||||||||| ||||    
T  43415959 tttaaaattaataaaatcggactaaaatgatgactaaaacaaagataaaagaccattttgaaacgtttaatagttaagggaccaattcgaaaaaaagaat 43416058  T
Q  212 taagttaagg 221  Q
    ||||||||||    
T  43416059 taagttaagg 43416068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 112 - 244
Target Start/End: Original strand, 41767155 - 41767287
Alignment:
Q  112 tttaaaattaataaaataggatcaaattgatgactaaaacaaatataaaggaccattttgaaacgttcaatagttattggaccaattcgaaaaaaggaat 211  Q
    ||||||||||||||||||||| |||| | |||||||||| ||| |||| |||||||||||||||||| ||||||||  |||||||||||||| || ||||    
T  41767155 tttaaaattaataaaataggaccaaaataatgactaaaataaagataagggaccattttgaaacgtttaatagttaggggaccaattcgaaataaagaat 41767254  T
Q  212 taagttaaggaatcatacgatgaattaagccta 244  Q
    |||||||||| | || | ||| |||||||||||    
T  41767255 taagttaagggaccaaatgatcaattaagccta 41767287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 120 - 244
Target Start/End: Complemental strand, 43414498 - 43414374
Alignment:
Q  120 taataaaataggatcaaattgatgactaaaacaaatataaaggaccattttgaaacgttcaatagttattggaccaattcgaaaaaaggaattaagttaa 219  Q
    ||||||||||| | |||||||||||  |||||| | ||||||||||||||||||||||| ||||||||  ||||||||||||||||| |||| |||||||    
T  43414498 taataaaatagtaccaaattgatgatgaaaacatagataaaggaccattttgaaacgtttaatagttaggggaccaattcgaaaaaaagaataaagttaa 43414399  T
Q  220 ggaatcatacgatgaattaagccta 244  Q
    || | || | ||| |||||||||||    
T  43414398 gggaccaaatgatcaattaagccta 43414374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 112 - 243
Target Start/End: Complemental strand, 41766247 - 41766116
Alignment:
Q  112 tttaaaattaataaaataggatcaaattgatgactaaaacaaatataaaggaccattttgaaacgttcaatagttattggaccaattcgaaaaaaggaat 211  Q
    ||||||||||||||||||| | ||||   |||||||||||||| ||||| ||||||||| |||| || ||||||||  | |||||||  ||| || ||||    
T  41766247 tttaaaattaataaaatagaaccaaaactatgactaaaacaaagataaatgaccattttaaaacctttaatagttagggtaccaatttaaaataaagaat 41766148  T
Q  212 taagttaaggaatcatacgatgaattaagcct 243  Q
    |||||||||| |||| | ||| ||||||||||    
T  41766147 taagttaagggatcaaatgatcaattaagcct 41766116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 112 - 174
Target Start/End: Complemental strand, 44769804 - 44769742
Alignment:
Q  112 tttaaaattaataaaataggatcaaattgatgactaaaacaaatataaaggaccattttgaaa 174  Q
    |||||||||||||||||| |||||||||||||||||||||||| ||||| |||||| ||||||    
T  44769804 tttaaaattaataaaatatgatcaaattgatgactaaaacaaagataaatgaccatgttgaaa 44769742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 108 - 183
Target Start/End: Original strand, 4535017 - 4535091
Alignment:
Q  108 tggatttaaaattaataaaataggatcaaattgatgactaaaacaaatataaaggaccattttgaaacgttcaata 183  Q
    ||||||| |||||||||||||||||||||||||||||| |||||||| || ||||||||  |||||||||| ||||    
T  4535017 tggatttcaaattaataaaataggatcaaattgatgacgaaaacaaagat-aaggaccaaattgaaacgtttaata 4535091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 109 - 196
Target Start/End: Complemental strand, 4534161 - 4534075
Alignment:
Q  109 ggatttaaaattaataaaataggatcaaattgatgactaaaacaaatataaaggaccattttgaaacgttcaatagttattggaccaa 196  Q
    |||||||||||||||||||||||| |||||||||||| |||||||| || ||||||||  ||||||| || |||| |||  |||||||    
T  4534161 ggatttaaaattaataaaataggaccaaattgatgacgaaaacaaagat-aaggaccaaattgaaacatttaatatttaaaggaccaa 4534075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 110 - 185
Target Start/End: Original strand, 23768475 - 23768549
Alignment:
Q  110 gatttaaaattaataaaataggatcaaattgatgactaaaacaaatataaaggaccattttgaaacgttcaatagt 185  Q
    ||||||||||||||||||||||| |||||||||||| |||||||| || |||||||| ||| |||| || ||||||    
T  23768475 gatttaaaattaataaaataggaccaaattgatgacgaaaacaaagat-aaggaccaatttaaaacatttaatagt 23768549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 109 - 187
Target Start/End: Complemental strand, 9189521 - 9189444
Alignment:
Q  109 ggatttaaaattaataaaataggatcaaattgatgactaaaacaaatataaaggaccattttgaaacgttcaatagtta 187  Q
    ||||||||||||||||||||| || ||||||||||||  ||||||| || ||||||||  |||||||||| ||||||||    
T  9189521 ggatttaaaattaataaaatatgaccaaattgatgacagaaacaaagat-aaggaccaaattgaaacgtttaatagtta 9189444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 109 - 187
Target Start/End: Original strand, 9190431 - 9190508
Alignment:
Q  109 ggatttaaaattaataaaataggatcaaattgatgactaaaacaaatataaaggaccattttgaaacgttcaatagtta 187  Q
    |||||||||||||||||||| ||| ||||| ||||||||||||||| || ||||||||  ||||||| || ||||||||    
T  9190431 ggatttaaaattaataaaattggaccaaatcgatgactaaaacaaagat-aaggaccaaattgaaacatttaatagtta 9190508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 109 - 159
Target Start/End: Complemental strand, 22913319 - 22913269
Alignment:
Q  109 ggatttaaaattaataaaataggatcaaattgatgactaaaacaaatataa 159  Q
    |||||||||||||||||||||||| |||||||||||| |||||||| ||||    
T  22913319 ggatttaaaattaataaaataggaccaaattgatgacgaaaacaaagataa 22913269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 108 - 196
Target Start/End: Complemental strand, 16346227 - 16346140
Alignment:
Q  108 tggatttaaaattaataaaataggatcaaattgatgactaaaacaaatataaaggaccattttgaaacgttcaatagttattggaccaa 196  Q
    ||||||| ||||||||||||||||| ||||| |||||| | |||||| || ||||||||  |||||||||| ||||||||  |||||||    
T  16346227 tggatttcaaattaataaaataggaccaaatcgatgacgataacaaagat-aaggaccaaattgaaacgtttaatagttaagggaccaa 16346140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 110 - 196
Target Start/End: Complemental strand, 12818880 - 12818795
Alignment:
Q  110 gatttaaaattaataaaataggatcaaattgatgactaaaacaaatataaaggaccattttgaaacgttcaatagttattggaccaa 196  Q
    ||||||||||||||||||||||||||||| ||| || |||||||| || || |||||  |||||| ||| ||||||||  |||||||    
T  12818880 gatttaaaattaataaaataggatcaaatcgataacgaaaacaaagat-aatgaccaaattgaaatgtttaatagttaagggaccaa 12818795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 110 - 187
Target Start/End: Original strand, 12820088 - 12820164
Alignment:
Q  110 gatttaaaattaataaaataggatcaaattgatgactaaaacaaatataaaggaccattttgaaacgttcaatagtta 187  Q
    ||||||||||||||||||||||| ||||| || ||| |||||||| || ||||||||  || ||||||| ||||||||    
T  12820088 gatttaaaattaataaaataggaccaaatcgacgacgaaaacaaagat-aaggaccaaattaaaacgtttaatagtta 12820164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 108 - 192
Target Start/End: Original strand, 22914178 - 22914261
Alignment:
Q  108 tggatttaaaattaataaaataggatcaaattgatgactaaaacaaatataaaggaccattttgaaacgttcaatagttattgga 192  Q
    ||||||| ||||||||||||||||| ||||| |||||| | |||||| || ||||| ||  |||||||||| |||||||| ||||    
T  22914178 tggatttcaaattaataaaataggaccaaatcgatgacgataacaaagat-aaggatcaaattgaaacgtttaatagttaatgga 22914261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 156 - 243
Target Start/End: Original strand, 11081067 - 11081154
Alignment:
Q  156 ataaaggaccattttgaaacgttcaatagttattggaccaattcgaaaaaaggaattaagttaaggaatcatacgatgaattaagcct 243  Q
    ||||||||||| |||| |||||| ||||||||  ||||||| | ||||| || || |||||||||| |||| | |||| |||||||||    
T  11081067 ataaaggaccaatttggaacgtttaatagttagaggaccaaattgaaaacagaaaataagttaagggatcaaatgatgtattaagcct 11081154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 70
Target Start/End: Complemental strand, 44769897 - 44769845
Alignment:
Q  18 gaagatgaggaagaaagtaatttaaattatgtattggtgatacatagttagat 70  Q
    ||||| |||||||||| |||| |||||||||| |||||||||||  |||||||    
T  44769897 gaagaagaggaagaaaataatataaattatgtgttggtgatacactgttagat 44769845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 78; Significance: 3e-36; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 112 - 245
Target Start/End: Complemental strand, 38593156 - 38593023
Alignment:
Q  112 tttaaaattaataaaataggatcaaattgatgactaaaacaaatataaaggaccattttgaaacgttcaatagttattggaccaattcgaaaaaaggaat 211  Q
    ||||||||||||||||||||| ||||||||||||||||||||| | ||||||||||||||||||||| |||||||| |  | ||||||||||||| ||||    
T  38593156 tttaaaattaataaaataggaccaaattgatgactaaaacaaagacaaaggaccattttgaaacgtttaatagttaatatatcaattcgaaaaaaagaat 38593057  T
Q  212 taagttaaggaatcatacgatgaattaagcctaa 245  Q
    |||||||||| |||| | ||| ||||||| ||||    
T  38593056 taagttaaggtatcaaatgatcaattaagtctaa 38593023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 112 - 245
Target Start/End: Complemental strand, 38596752 - 38596619
Alignment:
Q  112 tttaaaattaataaaataggatcaaattgatgactaaaacaaatataaaggaccattttgaaacgttcaatagttattggaccaattcgaaaaaaggaat 211  Q
    ||||||||||||||||||||| ||||||||||||||||||||| | ||||||||||||||||||||| |||||||| |  | ||||||||||||| ||||    
T  38596752 tttaaaattaataaaataggaccaaattgatgactaaaacaaagacaaaggaccattttgaaacgtttaatagttaatatatcaattcgaaaaaaagaat 38596653  T
Q  212 taagttaaggaatcatacgatgaattaagcctaa 245  Q
    |||||||||| |||| | ||| ||||||| ||||    
T  38596652 taagttaaggtatcaaatgatcaattaagtctaa 38596619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 112 - 221
Target Start/End: Complemental strand, 10330831 - 10330723
Alignment:
Q  112 tttaaaattaataaaataggatcaaattgatgactaaaacaaatataaaggaccattttgaaacgttcaatagttattggaccaattcgaaaaaaggaat 211  Q
    ||||||||||||||||||||| |||||| ||| |||||||||| ||||| ||||||||||||||||| ||| ||||  |||||||||  |||||| ||||    
T  10330831 tttaaaattaataaaataggaccaaattaatggctaaaacaaagataaatgaccattttgaaacgtttaatcgttaggggaccaatt-taaaaaaagaat 10330733  T
Q  212 taagttaagg 221  Q
    ||| ||||||    
T  10330732 taaattaagg 10330723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 112 - 221
Target Start/End: Original strand, 38594038 - 38594147
Alignment:
Q  112 tttaaaattaataaaataggatcaaattgatgactaaaacaaatataaaggaccattttgaaacgttcaatagttattggaccaattcgaaaaaaggaat 211  Q
    ||||||||||||||||||||| |||||| ||| |||||| ||| ||||| ||||||||| ||||||| ||||||||  |||| ||||  |||||| ||||    
T  38594038 tttaaaattaataaaataggaccaaatttatgtctaaaataaagataaatgaccattttaaaacgtttaatagttaagggactaatttaaaaaaaagaat 38594137  T
Q  212 taagttaagg 221  Q
    ||||||||||    
T  38594138 taagttaagg 38594147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 112 - 221
Target Start/End: Original strand, 38597634 - 38597743
Alignment:
Q  112 tttaaaattaataaaataggatcaaattgatgactaaaacaaatataaaggaccattttgaaacgttcaatagttattggaccaattcgaaaaaaggaat 211  Q
    ||||||||||||||||||||| |||||| ||| |||||| ||| ||||| ||||||||| ||||||| ||||||||  |||| ||||  |||||| ||||    
T  38597634 tttaaaattaataaaataggaccaaatttatgtctaaaataaagataaatgaccattttaaaacgtttaatagttaagggactaatttaaaaaaaagaat 38597733  T
Q  212 taagttaagg 221  Q
    ||||||||||    
T  38597734 taagttaagg 38597743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 112 - 206
Target Start/End: Original strand, 371958 - 372052
Alignment:
Q  112 tttaaaattaataaaataggatcaaattgatgactaaaacaaatataaaggaccattttgaaacgttcaatagttattggaccaattcgaaaaaa 206  Q
    |||||||||||||||||||||||||||||||||  |||||||| |||||||| ||  |||||||||| ||||||||  |||| |||| |||||||    
T  371958 tttaaaattaataaaataggatcaaattgatgatgaaaacaaagataaaggatcaaattgaaacgtttaatagttaggggactaatttgaaaaaa 372052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 110 - 187
Target Start/End: Original strand, 33553355 - 33553431
Alignment:
Q  110 gatttaaaattaataaaataggatcaaattgatgactaaaacaaatataaaggaccattttgaaacgttcaatagtta 187  Q
    ||||||||||||||||||||||| ||||| |||||| |||||||| || ||||||||  |||||||||| ||||||||    
T  33553355 gatttaaaattaataaaataggaccaaatcgatgacgaaaacaaagat-aaggaccaaattgaaacgtttaatagtta 33553431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 111 - 159
Target Start/End: Complemental strand, 30178670 - 30178622
Alignment:
Q  111 atttaaaattaataaaataggatcaaattgatgactaaaacaaatataa 159  Q
    ||||||||||||||||||||||||||||||||||| |||||||| ||||    
T  30178670 atttaaaattaataaaataggatcaaattgatgacgaaaacaaagataa 30178622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 109 - 187
Target Start/End: Original strand, 20630660 - 20630737
Alignment:
Q  109 ggatttaaaattaataaaataggatcaaattgatgactaaaacaaatataaaggaccattttgaaacgttcaatagtta 187  Q
    |||||||||||||||||||| ||| ||||| |||||| |||||||| || ||||||||  |||||||||| ||||||||    
T  20630660 ggatttaaaattaataaaattggaccaaatcgatgacgaaaacaaagat-aaggaccaaattgaaacgtttaatagtta 20630737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 112 - 166
Target Start/End: Complemental strand, 370892 - 370838
Alignment:
Q  112 tttaaaattaataaaataggatcaaattgatgactaaaacaaatataaaggacca 166  Q
    |||||||| ||||||||||||||||||||||||  |||||||| ||||| |||||    
T  370892 tttaaaatcaataaaataggatcaaattgatgataaaaacaaagataaatgacca 370838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 108 - 161
Target Start/End: Original strand, 30179540 - 30179593
Alignment:
Q  108 tggatttaaaattaataaaataggatcaaattgatgactaaaacaaatataaag 161  Q
    ||||||| ||||||||||||||||| ||||| |||||| |||||||| ||||||    
T  30179540 tggatttcaaattaataaaataggaccaaatcgatgacgaaaacaaagataaag 30179593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 40 - 97
Target Start/End: Complemental strand, 12364387 - 12364330
Alignment:
Q  40 taaattatgtattggtgatacatagttagatccaattgacctcatttttccaacggtc 97  Q
    |||||||||| ||||||||||| |||||||||  || |||||||||| ||||| ||||    
T  12364387 taaattatgtgttggtgatacacagttagatctgatagacctcatttatccaatggtc 12364330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 72; Significance: 1e-32; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 112 - 243
Target Start/End: Complemental strand, 10673734 - 10673603
Alignment:
Q  112 tttaaaattaataaaataggatcaaattgatgactaaaacaaatataaaggaccattttgaaacgttcaatagttattggaccaattcgaaaaaaggaat 211  Q
    |||||||||||||||||||||  ||||||||||| |||||||| |||||||||||  |||||||||| | ||||||  |||||||||| |||||| ||||    
T  10673734 tttaaaattaataaaataggactaaattgatgacgaaaacaaacataaaggaccaaattgaaacgtttattagttaagggaccaattcaaaaaaaagaat 10673635  T
Q  212 taagttaaggaatcatacgatgaattaagcct 243  Q
    |||||||||| | ||||| |||||||||||||    
T  10673634 taagttaagggaccatacaatgaattaagcct 10673603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 112 - 219
Target Start/End: Complemental strand, 13561403 - 13561296
Alignment:
Q  112 tttaaaattaataaaataggatcaaattgatgactaaaacaaatataaaggaccattttgaaacgttcaatagttattggaccaattcgaaaaaaggaat 211  Q
    ||||||||||||||||||||| |||||||||||||| |||||| ||||| ||||||||||||||||| ||||||||   |||||||||||||||| ||||    
T  13561403 tttaaaattaataaaataggaccaaattgatgactataacaaagataaaagaccattttgaaacgtttaatagttaagagaccaattcgaaaaaaagaat 13561304  T
Q  212 taagttaa 219  Q
    ||||||||    
T  13561303 taagttaa 13561296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 112 - 221
Target Start/End: Original strand, 13562287 - 13562396
Alignment:
Q  112 tttaaaattaataaaataggatcaaattgatgactaaaacaaatataaaggaccattttgaaacgttcaatagttattggaccaattcgaaaaaaggaat 211  Q
    ||||||||||||||||||||| |||||| |||||||||| ||| ||||||||||||||||||||||| ||||||||  ||||||||| |||||||  |||    
T  13562287 tttaaaattaataaaataggaccaaatttatgactaaaataaagataaaggaccattttgaaacgtttaatagttaagggaccaatttgaaaaaaataat 13562386  T
Q  212 taagttaagg 221  Q
    ||||||||||    
T  13562387 taagttaagg 13562396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 116 - 243
Target Start/End: Original strand, 24318059 - 24318186
Alignment:
Q  116 aaattaataaaataggatcaaattgatgactaaaacaaatataaaggaccattttgaaacgttcaatagttattggaccaattcgaaaaaaggaattaag 215  Q
    ||||||||||||| |||||||||||||||| |||||||| |||||||||||  || ||| ||| |||| |||  ||||||||||||||||| ||||||||    
T  24318059 aaattaataaaatgggatcaaattgatgacgaaaacaaagataaaggaccaaattaaaaagtttaataattaagggaccaattcgaaaaaaagaattaag 24318158  T
Q  216 ttaaggaatcatacgatgaattaagcct 243  Q
    |||||| | || | ||| ||||||||||    
T  24318159 ttaagggaccaaatgatcaattaagcct 24318186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 112 - 221
Target Start/End: Complemental strand, 25437907 - 25437800
Alignment:
Q  112 tttaaaattaataaaataggatcaaattgatgactaaaacaaatataaaggaccattttgaaacgttcaatagttattggaccaattcgaaaaaaggaat 211  Q
    |||||||||||||||||||||||| ||||||| | |||||||| ||||| |||||  |||||||||| ||||||||  | | |||||||||||||  |||    
T  25437907 tttaaaattaataaaataggatcagattgatggcgaaaacaaagataaa-gaccaaattgaaacgtttaatagttaaggaatcaattcgaaaaaa-taat 25437810  T
Q  212 taagttaagg 221  Q
    ||||||||||    
T  25437809 taagttaagg 25437800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 136 - 254
Target Start/End: Original strand, 10674493 - 10674611
Alignment:
Q  136 aattgatgactaaaacaaatataaaggaccattttgaaacgttcaatagttattggaccaattcgaaaaaaggaattaagttaaggaatcatacgatgaa 235  Q
    |||||||||  |||||||| |||||||||||  |||||||||| | ||||||  | ||||||||| ||||| |||||||||||||| | || | ||| ||    
T  10674493 aattgatgatgaaaacaaacataaaggaccaaattgaaacgtttattagttaaggtaccaattcgcaaaaaagaattaagttaagggaccaaatgatcaa 10674592  T
Q  236 ttaagcctaaaataaaata 254  Q
    |||| ||||||| ||||||    
T  10674593 ttaaacctaaaacaaaata 10674611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 109 - 187
Target Start/End: Original strand, 11724285 - 11724362
Alignment:
Q  109 ggatttaaaattaataaaataggatcaaattgatgactaaaacaaatataaaggaccattttgaaacgttcaatagtta 187  Q
    ||||||||||| ||||||||| ||||||||||||||| |||||||| || ||||||||  |||||||||| ||||||||    
T  11724285 ggatttaaaatcaataaaatatgatcaaattgatgacgaaaacaaagat-aaggaccaaattgaaacgtttaatagtta 11724362  T

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Target: chr6; HSP #8
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 112 - 221
Target Start/End: Complemental strand, 24317174 - 24317066
Alignment:
Q  112 tttaaaattaataaaataggatcaaattgatgactaaaacaaatataaaggaccattttgaaacgttcaatagttattggaccaattcgaaaaaaggaat 211  Q
    ||||||||| |||||| |||||||||| |||| | |||||||| ||||| |||||  |||||||||| ||||||||  |||  ||||| ||||||| |||    
T  24317174 tttaaaattgataaaacaggatcaaatcgatggcgaaaacaaagataaatgaccaaattgaaacgtttaatagttaaaggattaattcaaaaaaag-aat 24317076  T
Q  212 taagttaagg 221  Q
    ||||||||||    
T  24317075 taagttaagg 24317066  T

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Target: chr6; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 109 - 196
Target Start/End: Original strand, 1757483 - 1757569
Alignment:
Q  109 ggatttaaaattaataaaataggatcaaattgatgactaaaacaaatataaaggaccattttgaaacgttcaatagttattggaccaa 196  Q
    |||||||||||||||||||||||| ||||| || ||| |||||||| || ||||||||  |||||||||| ||||||||  |||||||    
T  1757483 ggatttaaaattaataaaataggaccaaatcgacgacgaaaacaaagat-aaggaccaaattgaaacgtttaatagttaagggaccaa 1757569  T

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Target: chr6; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 108 - 159
Target Start/End: Complemental strand, 27107309 - 27107258
Alignment:
Q  108 tggatttaaaattaataaaataggatcaaattgatgactaaaacaaatataa 159  Q
    ||||||||||||||||||||||||| |||||||||||| |||||||| ||||    
T  27107309 tggatttaaaattaataaaataggaccaaattgatgacgaaaacaaagataa 27107258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 108 - 159
Target Start/End: Complemental strand, 27149115 - 27149064
Alignment:
Q  108 tggatttaaaattaataaaataggatcaaattgatgactaaaacaaatataa 159  Q
    ||||||||||||||||||||||||| |||||||||||| |||||||| ||||    
T  27149115 tggatttaaaattaataaaataggaccaaattgatgacgaaaacaaagataa 27149064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 110 - 196
Target Start/End: Complemental strand, 14174229 - 14174144
Alignment:
Q  110 gatttaaaattaataaaataggatcaaattgatgactaaaacaaatataaaggaccattttgaaacgttcaatagttattggaccaa 196  Q
    |||||||||||||||||||||||  |||| |||||| |||||||| || ||||| ||  |||||| ||| |||||||| ||||||||    
T  14174229 gatttaaaattaataaaataggacaaaatcgatgacgaaaacaaagat-aaggatcaaattgaaaagtttaatagttagtggaccaa 14174144  T

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Target: chr6; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 110 - 196
Target Start/End: Complemental strand, 14178765 - 14178680
Alignment:
Q  110 gatttaaaattaataaaataggatcaaattgatgactaaaacaaatataaaggaccattttgaaacgttcaatagttattggaccaa 196  Q
    |||||||||||||||||||||||  |||| |||||| |||||||| || ||||| ||  |||||| ||| |||||||| ||||||||    
T  14178765 gatttaaaattaataaaataggacaaaatcgatgacgaaaacaaagat-aaggatcaaattgaaaagtttaatagttagtggaccaa 14178680  T

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Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 109 - 161
Target Start/End: Complemental strand, 1692200 - 1692149
Alignment:
Q  109 ggatttaaaattaataaaataggatcaaattgatgactaaaacaaatataaag 161  Q
    |||||||||||||||||| ||||| |||||||||||| |||||||| ||||||    
T  1692200 ggatttaaaattaataaa-taggaccaaattgatgacgaaaacaaagataaag 1692149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 147 - 221
Target Start/End: Complemental strand, 18230412 - 18230338
Alignment:
Q  147 aaaacaaatataaaggaccattttgaaacgttcaatagttattggaccaattcgaaaaaaggaattaagttaagg 221  Q
    |||||||| |||||||||||  || ||||||| ||| ||||  |||||||||  |||||| ||||||||||||||    
T  18230412 aaaacaaagataaaggaccaaattaaaacgtttaatggttaggggaccaattttaaaaaaagaattaagttaagg 18230338  T

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Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 112 - 178
Target Start/End: Original strand, 25439098 - 25439164
Alignment:
Q  112 tttaaaattaataaaataggatcaaattgatgactaaaacaaatataaaggaccattttgaaacgtt 178  Q
    ||||||||||||||||| ||| ||||||||| |  |||||||| ||||| |||||  ||||||||||    
T  25439098 tttaaaattaataaaattggaccaaattgataatgaaaacaaagataaaagaccaaattgaaacgtt 25439164  T

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Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 108 - 196
Target Start/End: Original strand, 1692969 - 1693056
Alignment:
Q  108 tggatttaaaattaataaaataggatcaaattgatgactaaaacaaatataaaggaccattttgaaacgttcaatagttattggaccaa 196  Q
    ||||||| ||||||||||||| ||| ||||| |||||| |||||||| || ||||||||  || ||| ||| ||||||||  |||||||    
T  1692969 tggatttcaaattaataaaattggaccaaatcgatgacgaaaacaaagat-aaggaccaaattaaaatgtttaatagttaagggaccaa 1693056  T

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Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 183 - 247
Target Start/End: Complemental strand, 4030201 - 4030137
Alignment:
Q  183 agttattggaccaattcgaaaaaaggaattaagttaaggaatcatacgatgaattaagcctaaaa 247  Q
    |||||| |||||| || ||||||||||||||| |||| | | || |||||| |||||||||||||    
T  4030201 agttatgggaccattttgaaaaaaggaattaaattaaaggaccaaacgatgtattaagcctaaaa 4030137  T

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Target: scaffold0013 (Bit Score: 64; Significance: 6e-28; HSPs: 2)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 109 - 228
Target Start/End: Complemental strand, 27959 - 27841
Alignment:
Q  109 ggatttaaaattaataaaataggatcaaattgatgactaaaacaaatataaaggaccattttgaaacgttcaatagttattggaccaattcgaaaaaagg 208  Q
    |||||||||||||||||||||||| ||| |||||| |||||||||| ||||| ||||||||||||||||| ||  ||||  ||||||| ||||||||| |    
T  27959 ggatttaaaattaataaaataggaccaacttgatggctaaaacaaagataaatgaccattttgaaacgtttaaccgttaggggaccaa-tcgaaaaaaag 27861  T
Q  209 aattaagttaaggaatcata 228  Q
    ||||||||||||| ||||||    
T  27860 aattaagttaagggatcata 27841  T

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Target: scaffold0013; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 112 - 221
Target Start/End: Complemental strand, 32227 - 32120
Alignment:
Q  112 tttaaaattaataaaataggatcaaattgatgactaaaacaaatataaaggaccattttgaaacgttcaatagttattggaccaattcgaaaaaaggaat 211  Q
    ||||||||||||||||||||| |||||||||| |||||||||| |||||  |||| ||| ||||||| ||   |||  ||||||||| ||||||| ||||    
T  32227 tttaaaattaataaaataggaccaaattgatggctaaaacaaagataaataaccaatttaaaacgtttaaccttta-gggaccaatttgaaaaaa-gaat 32130  T
Q  212 taagttaagg 221  Q
    ||||||||||    
T  32129 taagttaagg 32120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 109 - 159
Target Start/End: Complemental strand, 204665 - 204615
Alignment:
Q  109 ggatttaaaattaataaaataggatcaaattgatgactaaaacaaatataa 159  Q
    |||||||||||||||||||||||| |||||||||||| |||||||| ||||    
T  204665 ggatttaaaattaataaaataggaccaaattgatgacgaaaacaaagataa 204615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 108 - 196
Target Start/End: Original strand, 205540 - 205627
Alignment:
Q  108 tggatttaaaattaataaaataggatcaaattgatgactaaaacaaatataaaggaccattttgaaacgttcaatagttattggaccaa 196  Q
    ||||||| |||||||||||||||||  |||| |||||| |||||||| || ||||||||  |||||||||| |||| |||  |||||||    
T  205540 tggatttcaaattaataaaataggacgaaatcgatgacgaaaacaaagat-aaggaccaaattgaaacgtttaataattaagggaccaa 205627  T

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Target: scaffold0041 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 109 - 187
Target Start/End: Original strand, 85065 - 85142
Alignment:
Q  109 ggatttaaaattaataaaataggatcaaattgatgactaaaacaaatataaaggaccattttgaaacgttcaatagtta 187  Q
    ||||||||||||||||||||| || |||||||||||| |||| ||| || ||||||||  |||||||| | ||||||||    
T  85065 ggatttaaaattaataaaatatgaccaaattgatgacaaaaataaagat-aaggaccaaattgaaacggttaatagtta 85142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 190 - 249
Target Start/End: Original strand, 1193 - 1252
Alignment:
Q  190 ggaccaattcgaaaaaaggaattaagttaaggaatcatacgatgaattaagcctaaaata 249  Q
    ||||||||| ||||||| ||||||||||||||||| |   |||| |||||||||||||||    
T  1193 ggaccaatttgaaaaaaagaattaagttaaggaattaattgatgtattaagcctaaaata 1252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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