View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19240_high_19 (Length: 326)

Name: NF19240_high_19
Description: NF19240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19240_high_19
NF19240_high_19
[»] chr1 (8 HSPs)
chr1 (1-310)||(7927555-7927852)
chr1 (1-141)||(1510369-1510508)
chr1 (1-42)||(17603443-17603484)
chr1 (104-142)||(46423150-46423188)
chr1 (9-141)||(37473270-37473402)
chr1 (5-49)||(15477541-15477585)
chr1 (5-92)||(37517257-37517345)
chr1 (1-64)||(38578474-38578538)
[»] chr4 (8 HSPs)
chr4 (1-141)||(50681148-50681288)
chr4 (23-142)||(43505828-43505945)
chr4 (1-88)||(54069476-54069564)
chr4 (1-82)||(31076445-31076527)
chr4 (103-144)||(1432986-1433027)
chr4 (1-50)||(39691202-39691251)
chr4 (104-141)||(44797763-44797800)
chr4 (104-141)||(47119097-47119134)
[»] chr3 (15 HSPs)
chr3 (1-142)||(30956685-30956826)
chr3 (1-142)||(30972497-30972638)
chr3 (1-90)||(5331215-5331304)
chr3 (1-90)||(29520538-29520627)
chr3 (1-58)||(49034322-49034379)
chr3 (1-50)||(20170485-20170534)
chr3 (1-141)||(35959515-35959655)
chr3 (1-91)||(39980649-39980740)
chr3 (30-64)||(16272704-16272738)
chr3 (95-141)||(21335560-21335606)
chr3 (5-58)||(14145866-14145919)
chr3 (1-42)||(20257505-20257546)
chr3 (85-141)||(944364-944420)
chr3 (1-82)||(4400975-4401058)
chr3 (1-64)||(44061082-44061146)
[»] chr2 (8 HSPs)
chr2 (1-141)||(39659568-39659707)
chr2 (5-141)||(41407172-41407309)
chr2 (4-58)||(42420356-42420410)
chr2 (1-136)||(32592463-32592597)
chr2 (6-49)||(39073753-39073796)
chr2 (1-43)||(10490598-10490640)
chr2 (1-55)||(36114582-36114636)
chr2 (1-49)||(41851498-41851546)
[»] chr7 (8 HSPs)
chr7 (1-88)||(420283-420371)
chr7 (1-70)||(45338390-45338460)
chr7 (1-90)||(45806536-45806626)
chr7 (1-49)||(119873-119921)
chr7 (1-55)||(34083584-34083638)
chr7 (1-58)||(20258466-20258523)
chr7 (2-58)||(28613594-28613650)
chr7 (103-139)||(33287718-33287754)
[»] chr5 (6 HSPs)
chr5 (1-104)||(16458038-16458141)
chr5 (1-49)||(16937942-16937990)
chr5 (1-70)||(29925782-29925852)
chr5 (104-146)||(12433532-12433574)
chr5 (1-142)||(32372494-32372635)
chr5 (1-64)||(34102373-34102438)
[»] chr8 (8 HSPs)
chr8 (55-141)||(14956409-14956494)
chr8 (73-140)||(41475182-41475248)
chr8 (103-141)||(34236043-34236081)
chr8 (3-44)||(10758317-10758358)
chr8 (110-151)||(22790501-22790542)
chr8 (1-58)||(28385265-28385321)
chr8 (1-42)||(38750328-38750369)
chr8 (7-82)||(12497296-12497372)
[»] scaffold0012 (1 HSPs)
scaffold0012 (31-91)||(207670-207731)
[»] chr6 (3 HSPs)
chr6 (103-141)||(24626166-24626204)
chr6 (1-42)||(6909931-6909972)
chr6 (1-58)||(28621169-28621226)


Alignment Details
Target: chr1 (Bit Score: 215; Significance: 1e-118; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 310
Target Start/End: Complemental strand, 7927852 - 7927555
Alignment:
1 aaacaacttatagcatatacacaaacattttaacgttattttattttttgttataaaatagcttttgcaaagttatacataaatgcttatcgggataaga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
7927852 aaacaacttatagcatatacacaaacattttaacgttattttattttttgttataaaatagcttttgcaaagttatacataaatgcttatcgggataaga 7927753  T
101 gctttgtgttataagttgtaaataagttgtttatccaaacatatccatagtttcggtttccaataagctgacattaaacaacataaaattgaagacttat 200  Q
    |||| |||||||||||||| ||||||||||||||||||||||||||||||||||||     |||   ||| |||   |    ||||   |||||||||||    
7927752 gcttcgtgttataagttgtgaataagttgtttatccaaacatatccatagtttcgg-----aatttactggcatggca----ataa---tgaagacttat 7927665  T
201 tttactggcatttgactttggaatttttaaggatttgtaccgttagaacaacatatatttgtattagttataagatttctgagtgaaattgttgaatgac 300  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
7927664 tttactggcatttgactttggaatttctaaggatttgtaccgttagaacaacatatatttgtattagttataagatttctgagtgaaattgttgaatgac 7927565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 141
Target Start/End: Original strand, 1510369 - 1510508
Alignment:
1 aaacaacttatagcatatacacaaacattttaacgttattttattttttgttataaaa-tagcttttgcaaagttatacataaatgcttatcgggataag 99  Q
    |||||||||||| | |||||| ||||| || ||| |||||| || ||||||| ||||| ||||||||||||  ||||| |||| ||||||||  ||||||    
1510369 aaacaacttataacctatacaaaaacaattgaacattattt-atcttttgttttaaaaatagcttttgcaagcttatatataagtgcttatcaagataag 1510467  T
100 agctttgtgttataagttgtaaataagttgtttatccaaaca 141  Q
     || ||||| |||||| |  ||||||| ||||||||||||||    
1510468 cgc-ttgtgctataagatacaaataagctgtttatccaaaca 1510508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 17603443 - 17603484
Alignment:
1 aaacaacttatagcatatacacaaacattttaacgttatttt 42  Q
    ||||||||||||||||||||| ||||| ||||||||||||||    
17603443 aaacaacttatagcatatacaaaaacaatttaacgttatttt 17603484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 104 - 142
Target Start/End: Complemental strand, 46423188 - 46423150
Alignment:
104 ttgtgttataagttgtaaataagttgtttatccaaacat 142  Q
    |||||||||||| || |||||||||||||||||||||||    
46423188 ttgtgttataagctgcaaataagttgtttatccaaacat 46423150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 141
Target Start/End: Complemental strand, 37473402 - 37473270
Alignment:
9 tatagcatatacacaaacattttaacgttattttattttttgttataaaa-tagcttttgcaaagttatacataaatgcttatcgggataagagctttgt 107  Q
    ||||||||||||| ||||   ||||| || ||||||  |||| ||||||| |||||| || ||  |||||||||| ||||| ||  ||||||| ||| ||    
37473402 tatagcatatacataaacgacttaactttgttttatcatttgctataaaaatagcttatgtaagcttatacataagtgcttgtcatgataagaactt-gt 37473304  T
108 gttataagttgtaaataagttgtttatccaaaca 141  Q
    |  ||||| || ||||||||||||||||||||||    
37473303 gcaataagctgcaaataagttgtttatccaaaca 37473270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 49
Target Start/End: Complemental strand, 15477585 - 15477541
Alignment:
5 aacttatagcatatacacaaacattttaacgttattttatttttt 49  Q
    ||||||||||||||||| ||||| |||||| ||||||||| ||||    
15477585 aacttatagcatatacaaaaacaatttaactttattttatctttt 15477541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 92
Target Start/End: Original strand, 37517257 - 37517345
Alignment:
5 aacttatagcatatacacaaacattttaacgttattttattttttgttata-aaatagcttttgcaaagttatacataaatgcttatcg 92  Q
    ||||||||  ||||||| ||||| |||||| ||||||||| ||||| |||| ||||| ||| ||| |  ||||||||||| ||||||||    
37517257 aacttataatatatacaaaaacaatttaactttattttatattttggtatagaaataacttatgcgagcttatacataaacgcttatcg 37517345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 38578538 - 38578474
Alignment:
1 aaacaacttatagcatatacacaaacattttaacgttattttattttttgttata-aaatagctt 64  Q
    |||||||||||||| |||||| ||| | |||||| |||| |||| |||||||||| |||||||||    
38578538 aaacaacttatagcttatacaaaaataatttaactttatgttatcttttgttatagaaatagctt 38578474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 54; Significance: 5e-22; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 1 - 141
Target Start/End: Original strand, 50681148 - 50681288
Alignment:
1 aaacaacttatagcatatacacaaacattttaacgttattttattttttgttat-aaaatagcttttgcaaagttatacataaatgcttatcgggataag 99  Q
    ||||||||||||||||||||| ||||| |||||| ||||||||| || |  ||| ||||||||||||| ||  ||||||||||| |||||||  ||||||    
50681148 aaacaacttatagcatatacaaaaacaatttaacattattttatcttatcctataaaaatagcttttgtaagcttatacataaacgcttatcatgataag 50681247  T
100 agctttgtgttataagttgtaaataagttgtttatccaaaca 141  Q
      | ||||| |||||| | |||||||||||||||||||||||    
50681248 ttc-ttgtgctataagctataaataagttgtttatccaaaca 50681288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 23 - 142
Target Start/End: Complemental strand, 43505945 - 43505828
Alignment:
23 aaacattttaacgttattttattttttgttat-aaaatagcttttgcaaagttatacataaatgcttatcgggataagagctttgtgttataagttgtaa 121  Q
    ||||| |||||||||||||||| ||||| ||| |||||||||| |||||  |||||||||| ||||||||  |||  |   |||||| ||||||||| ||    
43505945 aaacaatttaacgttattttatcttttgctataaaaatagcttatgcaagcttatacataagtgcttatcatgatgcg---tttgtgctataagttgcaa 43505849  T
122 ataagttgtttatccaaacat 142  Q
    |||||||||||||||||||||    
43505848 ataagttgtttatccaaacat 43505828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 54069476 - 54069564
Alignment:
1 aaacaacttatagcatatacacaaacattttaacgttattttattttttgttat-aaaatagcttttgcaaagttatacataaatgctt 88  Q
    |||||| |||||||||||||| ||||| |||||| ||||||||| ||||| ||| |||||||| | |||||  |||||||||| |||||    
54069476 aaacaaattatagcatatacaaaaacaatttaacattattttatcttttgatataaaaatagcatatgcaagcttatacataagtgctt 54069564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 31076445 - 31076527
Alignment:
1 aaacaacttatagcatatacacaaacattttaacgttattttattttttgttat-aaaatagcttttgcaaagttatacataa 82  Q
    |||||| |||||||||||||| ||||| |||||  ||||||||| ||||| | | |||||||||| |||||  ||||||||||    
31076445 aaacaatttatagcatatacaaaaacagtttaaacttattttatcttttgctctaaaaatagcttatgcaagcttatacataa 31076527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 103 - 144
Target Start/End: Complemental strand, 1433027 - 1432986
Alignment:
103 tttgtgttataagttgtaaataagttgtttatccaaacatat 144  Q
    ||||||||||||  | ||||||||||||||||||||||||||    
1433027 tttgtgttataaactttaaataagttgtttatccaaacatat 1432986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 39691202 - 39691251
Alignment:
1 aaacaacttatagcatatacacaaacattttaacgttattttattttttg 50  Q
    ||||||||||||||||||||| ||  |||||||| ||||||||| |||||    
39691202 aaacaacttatagcatatacaaaacaattttaacattattttatcttttg 39691251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 104 - 141
Target Start/End: Complemental strand, 44797800 - 44797763
Alignment:
104 ttgtgttataagttgtaaataagttgtttatccaaaca 141  Q
    ||||| ||||||||| ||||||||||||||||||||||    
44797800 ttgtgctataagttgcaaataagttgtttatccaaaca 44797763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 104 - 141
Target Start/End: Original strand, 47119097 - 47119134
Alignment:
104 ttgtgttataagttgtaaataagttgtttatccaaaca 141  Q
    ||||| ||||||||| ||||||||||||||||||||||    
47119097 ttgtgctataagttgcaaataagttgtttatccaaaca 47119134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 51; Significance: 3e-20; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 142
Target Start/End: Original strand, 30956685 - 30956826
Alignment:
1 aaacaacttatagcatatacacaaacattttaacgttattttattttttgttata-aaatagcttttgcaaagttatacataaatgcttatcgggataag 99  Q
    |||||||||||||| |||||| ||||| |||||| ||||||||| ||||| |||| ||||||||| || ||  |||| ||||||||||||||  ||||||    
30956685 aaacaacttatagcctatacaaaaacaatttaactttattttatcttttgctatagaaatagcttatgtaagcttatgcataaatgcttatcatgataag 30956784  T
100 agctttgtgttataagttgtaaataagttgtttatccaaacat 142  Q
      | ||||| |||||| || ||||||| |||||||||||||||    
30956785 -cccttgtgctataagctgcaaataagctgtttatccaaacat 30956826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 142
Target Start/End: Original strand, 30972497 - 30972638
Alignment:
1 aaacaacttatagcatatacacaaacattttaacgttattttattttttgttata-aaatagcttttgcaaagttatacataaatgcttatcgggataag 99  Q
    |||||||||||||| |||||| ||||| |||||| ||||||||| ||||| |||| ||||||||| || ||  |||| ||||||||||||||  ||||||    
30972497 aaacaacttatagcctatacaaaaacaatttaactttattttatcttttgctatagaaatagcttatgtaagcttatgcataaatgcttatcatgataag 30972596  T
100 agctttgtgttataagttgtaaataagttgtttatccaaacat 142  Q
      | ||||| |||||| || ||||||| |||||||||||||||    
30972597 -cccttgtgctataagctgcaaataagctgtttatccaaacat 30972638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 5331304 - 5331215
Alignment:
1 aaacaacttatagcatatacacaaacattttaacgttattttattttttgttataaaatagcttttgcaaagttatacataaatgcttat 90  Q
    |||||||||||||||  || |  |||| |||||||||||||| | ||||| ||||||||||||| |||||  |||||||||| |||||||    
5331304 aaacaacttatagcaattagaagaacaatttaacgttattttctcttttgctataaaatagcttatgcaagcttatacataagtgcttat 5331215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 29520538 - 29520627
Alignment:
1 aaacaacttatagcatatacacaaacattttaacgttattttattttttgttataaaatagcttttgcaaagttatacataaatgcttat 90  Q
    |||||||||||||||  || |  |||| |||||||||||||| | ||||| ||||||||||||| |||||  |||||||||| |||||||    
29520538 aaacaacttatagcaattagaagaacaatttaacgttattttctcttttgctataaaatagcttatgcaagcttatacataagtgcttat 29520627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 49034322 - 49034379
Alignment:
1 aaacaacttatagcatatacacaaacattttaacgttattttattttttgttataaaa 58  Q
    |||||||||||||||||| |||||||| ||||||| |||||||| ||||| |||||||    
49034322 aaacaacttatagcatatgcacaaacaatttaacggtattttatcttttgctataaaa 49034379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 20170534 - 20170485
Alignment:
1 aaacaacttatagcatatacacaaacattttaacgttattttattttttg 50  Q
    ||||||||||||||||||||| ||||| |||||| ||||||||| |||||    
20170534 aaacaacttatagcatatacaaaaacaatttaacattattttatcttttg 20170485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 141
Target Start/End: Original strand, 35959515 - 35959655
Alignment:
1 aaacaacttatagcatatacacaaacattttaacgttattttattttttgttata-aaatagcttttgcaaagttatacataaatgcttatcgggataag 99  Q
    |||||||||| |||||||||| ||| | |||||| |||||||||  |||  |||| ||||||||| ||  |  ||||||||||   ||||||  ||||||    
35959515 aaacaacttacagcatatacaaaaataatttaactttattttatccttttctatagaaatagcttatgtgagcttatacataagctcttatcatgataag 35959614  T
100 agctttgtgttataagttgtaaataagttgtttatccaaaca 141  Q
    ||||| ||| |||||| || ||||||| ||||||||||||||    
35959615 agctt-gtgatataagctgcaaataagctgtttatccaaaca 35959655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 91
Target Start/End: Complemental strand, 39980740 - 39980649
Alignment:
1 aaacaacttatagcatatacacaaacattttaacgttattttattttttgttat-aaaatagcttttgcaaagttatacataaatgcttatc 91  Q
    |||||||||||||||| | || ||||| |||||||||||| ||| || || ||| |||| ||||  |||||| |||||||||| ||||||||    
39980740 aaacaacttatagcatgttcaaaaacaatttaacgttattgtatgttctgctataaaaaaagctaatgcaaacttatacataagtgcttatc 39980649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 30 - 64
Target Start/End: Complemental strand, 16272738 - 16272704
Alignment:
30 ttaacgttattttattttttgttataaaatagctt 64  Q
    ||||| |||||||||||||||||||||||||||||    
16272738 ttaactttattttattttttgttataaaatagctt 16272704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 95 - 141
Target Start/End: Complemental strand, 21335606 - 21335560
Alignment:
95 ataagagctttgtgttataagttgtaaataagttgtttatccaaaca 141  Q
    ||||| |||||||| ||||||||| ||||||| ||||||||||||||    
21335606 ataagcgctttgtgatataagttgcaaataagctgtttatccaaaca 21335560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 58
Target Start/End: Complemental strand, 14145919 - 14145866
Alignment:
5 aacttatagcatatacacaaacattttaacgttattttattttttgttataaaa 58  Q
    ||||||||||||||||  ||||| |||||| ||||||||| || ||||||||||    
14145919 aacttatagcatatacgaaaacaatttaactttattttatcttctgttataaaa 14145866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 20257546 - 20257505
Alignment:
1 aaacaacttatagcatatacacaaacattttaacgttatttt 42  Q
    ||||||||||||||||||||| ||||| |||||| |||||||    
20257546 aaacaacttatagcatatacaaaaacaatttaactttatttt 20257505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 85 - 141
Target Start/End: Complemental strand, 944420 - 944364
Alignment:
85 gcttatcgggataagagctttgtgttataagttgtaaataagttgtttatccaaaca 141  Q
    |||||||  ||||||  ||| |||||||||| || ||||||||||||||||||||||    
944420 gcttatcatgataagcacttagtgttataagctgcaaataagttgtttatccaaaca 944364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 4401058 - 4400975
Alignment:
1 aaacaacttatagcatatacacaaacattttaacgttattttattttttgttat--aaaatagcttttgcaaagttatacataa 82  Q
    ||||||||||||||||||||  ||| | ||||||||||||| |  ||||| |||  |||| ||||| |||||| ||||||||||    
4401058 aaacaacttatagcatatacgaaaataatttaacgttatttcaccttttggtataaaaaaaagcttatgcaaacttatacataa 4400975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 44061082 - 44061146
Alignment:
1 aaacaacttatagcatatacacaaacattttaacgttattttattttttgttata-aaatagctt 64  Q
    |||||||||||||| |||| | ||||| |||||| ||||||||| ||||| |||| |||||||||    
44061082 aaacaacttatagcttatagaaaaacaatttaaccttattttatcttttgctatagaaatagctt 44061146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 45; Significance: 1e-16; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 141
Target Start/End: Original strand, 39659568 - 39659707
Alignment:
1 aaacaacttatagcatatacacaaacattttaacgttattttattttttgttataaaatagcttttgcaaagttatacataaatgcttatcgggataaga 100  Q
    |||||| ||||| |||| ||| ||||| |||||||||||| ||| ||||||||||||||||  | | |||| ||||||||||  |||||||  ||||||     
39659568 aaacaagttataacatagacaaaaacaatttaacgttattgtatcttttgttataaaatagtgtatccaaacttatacataagcgcttatcatgataag- 39659666  T
101 gctttgtgttataagttgtaaataagttgtttatccaaaca 141  Q
      |||||| | |||| || ||||||||||||||||||||||    
39659667 catttgtgctctaagctgcaaataagttgtttatccaaaca 39659707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 5 - 141
Target Start/End: Complemental strand, 41407309 - 41407172
Alignment:
5 aacttatagcatatacacaaa-cattttaacgttattttattttttgttata-aaatagcttttgcaaagttatacataaatgcttatcgggataagagc 102  Q
    ||||||||||||||||| ||| || |||||| ||||||||| ||||| || | ||||||||| || ||  |||||||||| ||||||||  |||||| ||    
41407309 aacttatagcatatacaaaaaacaatttaactttattttatcttttggtacagaaatagcttatgtaagcttatacataagtgcttatcatgataagcgc 41407210  T
103 tttgtgttataagttgtaaataagttgtttatccaaaca 141  Q
    || ||| |||||| || ||| ||| ||||||||||||||    
41407209 tt-gtgctataagctgcaaacaagctgtttatccaaaca 41407172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 4 - 58
Target Start/End: Original strand, 42420356 - 42420410
Alignment:
4 caacttatagcatatacacaaacattttaacgttattttattttttgttataaaa 58  Q
    ||||||||| |||||||| ||||| |||||||||||||||| ||||| |||||||    
42420356 caacttatatcatatacaaaaacaatttaacgttattttatcttttgctataaaa 42420410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 136
Target Start/End: Complemental strand, 32592597 - 32592463
Alignment:
1 aaacaacttatagcatatacacaaacattttaacgttattttattttttgttataaaa-tagcttttgcaaagttatacataaatgcttatcgggataag 99  Q
    |||||||||||||| |||||| ||||| |||||| ||||||||| ||||  ||||||| ||| || |||||  ||||||||||  ||||||   ||||||    
32592597 aaacaacttatagcgtataca-aaacaatttaacattattttatctttttctataaaaatagtttatgcaagcttatacataagcgcttataatgataag 32592499  T
100 agctttgtgttataagttgtaaataagttgtttatcc 136  Q
     | |||||| |||||| |  |||||||||||||||||    
32592498 tg-tttgtgctataagctacaaataagttgtttatcc 32592463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 6 - 49
Target Start/End: Original strand, 39073753 - 39073796
Alignment:
6 acttatagcatatacacaaacattttaacgttattttatttttt 49  Q
    |||||||||||||||| ||||| |||||||||||||||| ||||    
39073753 acttatagcatatacaaaaacaatttaacgttattttatctttt 39073796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 10490640 - 10490598
Alignment:
1 aaacaacttatagcatatacacaaacattttaacgttatttta 43  Q
    ||||| ||||||||||||||| ||||| |||||||||||||||    
10490640 aaacaccttatagcatatacagaaacaatttaacgttatttta 10490598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 36114582 - 36114636
Alignment:
1 aaacaacttatagcatatacacaaacattttaacgttattttattttttgttata 55  Q
    ||||||||||| || |||||| ||||| |||||| ||||||||| ||||||||||    
36114582 aaacaacttattgcttatacaaaaacaatttaactttattttatcttttgttata 36114636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 41851546 - 41851498
Alignment:
1 aaacaacttatagcatatacacaaacattttaacgttattttatttttt 49  Q
    ||||||||||||||||||||| ||||| |||||| ||||| ||| ||||    
41851546 aaacaacttatagcatatacaaaaacaatttaactttattgtatctttt 41851498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 420371 - 420283
Alignment:
1 aaacaacttatagcatatacacaaacattttaacgttattttattttttgttataaa-atagcttttgcaaagttatacataaatgctt 88  Q
    ||||||||||||||||||||| ||||| || ||| ||||||||| ||||| |||||| ||||||| |||||  ||||||||||| ||||    
420371 aaacaacttatagcatatacaaaaacaattgaacattattttatcttttgctataaacatagcttatgcaagcttatacataaacgctt 420283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 45338460 - 45338390
Alignment:
1 aaacaacttatagcatatacacaaacattttaacgttattttattttttgttat-aaaatagcttttgcaa 70  Q
    |||||||||| |||||||||| ||||| ||||| |||||||||||||||| ||| |||||| ||| |||||    
45338460 aaacaacttacagcatatacaaaaacaatttaaggttattttattttttgctatgaaaataacttatgcaa 45338390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 45806536 - 45806626
Alignment:
1 aaacaacttatagcatatacacaaacattttaacgttattttattttttgttataaa-atagcttttgcaaagttatacataaatgcttat 90  Q
    |||||||||||||||  || | ||||| |||||||||||||| | ||||| |||||| ||||||| |||||  |||||||||| |||||||    
45806536 aaacaacttatagcaattagaaaaacaatttaacgttattttctcttttgctataaacatagcttatgcaagcttatacataagtgcttat 45806626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 119921 - 119873
Alignment:
1 aaacaacttatagcatatacacaaacattttaacgttattttatttttt 49  Q
    |||||||||||||||| |||||||||| |||||| ||||||||| ||||    
119921 aaacaacttatagcatttacacaaacaatttaactttattttatctttt 119873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 34083584 - 34083638
Alignment:
1 aaacaacttatagcatatacacaaacattttaacgttattttattttttgttata 55  Q
    ||||| |||||||| |||||||||||| |||||| ||||||||| ||||| ||||    
34083584 aaacagcttatagcttatacacaaacaatttaactttattttatcttttgctata 34083638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 20258523 - 20258466
Alignment:
1 aaacaacttatagcatatacacaaacattttaacgttattttattttttgttataaaa 58  Q
    |||||||||||||||  |||| ||||| |||||| ||||||||| ||||| |||||||    
20258523 aaacaacttatagcaattacaaaaacaatttaacattattttatcttttgctataaaa 20258466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 2 - 58
Target Start/End: Original strand, 28613594 - 28613650
Alignment:
2 aacaacttatagcatatacacaaacattttaacgttattttattttttgttataaaa 58  Q
    ||||||||||| | |||||| ||||| |||||| || |||||| |||||||||||||    
28613594 aacaacttataacttatacaaaaacaatttaactttgttttatcttttgttataaaa 28613650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 103 - 139
Target Start/End: Complemental strand, 33287754 - 33287718
Alignment:
103 tttgtgttataagttgtaaataagttgtttatccaaa 139  Q
    |||||| |||||||||||||||| |||||||||||||    
33287754 tttgtgctataagttgtaaataaattgtttatccaaa 33287718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 16458038 - 16458141
Alignment:
1 aaacaacttatagcatatacacaaacattttaacgttattttattttttgttat-aaaatagcttttgcaaagttatacataaatgcttatcgggataag 99  Q
    ||||||||||||||||||||| ||||| ||||| |||||||||| ||||| ||| |||||||||| |||||  ||||| ||||   |||||| |||||||    
16458038 aaacaacttatagcatatacaaaaacaatttaa-gttattttatcttttgctataaaaatagcttatgcaagcttatatataagcacttatcaggataag 16458136  T
100 agctt 104  Q
    |||||    
16458137 agctt 16458141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 16937942 - 16937990
Alignment:
1 aaacaacttatagcatatacacaaacattttaacgttattttatttttt 49  Q
    ||||||||||||||||||||| ||||| |||||||||||||||| ||||    
16937942 aaacaacttatagcatatacaaaaacaatttaacgttattttatctttt 16937990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 29925852 - 29925782
Alignment:
1 aaacaacttatagcatatacacaaacattttaacgttattttattttttgttat-aaaatagcttttgcaa 70  Q
    ||||||||||||||| ||||| ||||| ||||||| |||||||| ||||| ||| |||||||||| |||||    
29925852 aaacaacttatagcacatacagaaacaatttaacgctattttatcttttgctataaaaatagcttatgcaa 29925782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 104 - 146
Target Start/End: Original strand, 12433532 - 12433574
Alignment:
104 ttgtgttataagttgtaaataagttgtttatccaaacatatcc 146  Q
    |||||||||||| || |||||||||||||||||||||| ||||    
12433532 ttgtgttataagctgcaaataagttgtttatccaaacagatcc 12433574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 142
Target Start/End: Complemental strand, 32372635 - 32372494
Alignment:
1 aaacaacttatagcatatacacaaacattttaacgttattttattttttgttataa-aatagcttttgcaaagttatacataaatgcttatcgggataag 99  Q
    ||||| ||||||||||||||| ||||| || ||| |||||||||    || ||||| ||||| || || ||   |||||||||  |||||||  ||||||    
32372635 aaacagcttatagcatatacaaaaacaattcaactttattttatcaggtgctataataatagtttatgtaagtgtatacataagggcttatcatgataag 32372536  T
100 agctttgtgttataagttgtaaataagttgtttatccaaacat 142  Q
     |||| ||| |||||| || |||||||||||||||||||||||    
32372535 tgctt-gtgctataagctgcaaataagttgtttatccaaacat 32372494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 34102373 - 34102438
Alignment:
1 aaacaacttatagcatatacacaaacattttaacgttatttta--ttttttgttataaaatagctt 64  Q
    ||||||||||||||||||||| |||||  ||||| ||||||||  |||||||||  ||||||||||    
34102373 aaacaacttatagcatatacaaaaacaaattaacattattttatcttttttgtttaaaaatagctt 34102438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 55 - 141
Target Start/End: Original strand, 14956409 - 14956494
Alignment:
55 aaaatagcttttgcaaagttatacataaatgcttatcgggataagagctttgtgttataagttgtaaataagttgtttatccaaaca 141  Q
    |||||||||| |||||  |||||||||| ||||||||  |||||| | || ||| |||||| || ||||||||||||||||||||||    
14956409 aaaatagcttatgcaagcttatacataagtgcttatcatgataagcgatt-gtgctataagctgcaaataagttgtttatccaaaca 14956494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 73 - 140
Target Start/End: Original strand, 41475182 - 41475248
Alignment:
73 ttatacataaatgcttatcgggataagagctttgtgttataagttgtaaataagttgtttatccaaac 140  Q
    |||||||||| ||||||||  || ||| | ||||| |||||||||| |||||||||||||||||||||    
41475182 ttatacataagtgcttatcatgacaagtg-tttgtcttataagttgcaaataagttgtttatccaaac 41475248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 103 - 141
Target Start/End: Complemental strand, 34236081 - 34236043
Alignment:
103 tttgtgttataagttgtaaataagttgtttatccaaaca 141  Q
    ||||||||||||| || ||||||||||||||||||||||    
34236081 tttgtgttataagctgcaaataagttgtttatccaaaca 34236043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 44
Target Start/End: Original strand, 10758317 - 10758358
Alignment:
3 acaacttatagcatatacacaaacattttaacgttattttat 44  Q
    ||||||||||||||||||| ||||| |||||| |||||||||    
10758317 acaacttatagcatatacaaaaacaatttaactttattttat 10758358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 110 - 151
Target Start/End: Complemental strand, 22790542 - 22790501
Alignment:
110 tataagttgtaaataagttgtttatccaaacatatccatagt 151  Q
    |||||| |||||||||||||||||||||||||  ||||||||    
22790542 tataagctgtaaataagttgtttatccaaacaggtccatagt 22790501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 28385321 - 28385265
Alignment:
1 aaacaacttatagcatatacacaaacattttaacgttattttattttttgttataaaa 58  Q
    ||||||||||||||||||| | ||| | |||||||||||||| | |||||||||||||    
28385321 aaacaacttatagcatatata-aaagaatttaacgttattttgtcttttgttataaaa 28385265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 38750369 - 38750328
Alignment:
1 aaacaacttatagcatatacacaaacattttaacgttatttt 42  Q
    |||||||||||| |||||||| |||||||||||| |||||||    
38750369 aaacaacttatatcatatacaaaaacattttaacattatttt 38750328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 7 - 82
Target Start/End: Original strand, 12497296 - 12497372
Alignment:
7 cttatagcatatacacaaacattttaacgttattttattttttgttat-aaaatagcttttgcaaagttatacataa 82  Q
    ||||||||||||||| |||||  ||||| ||||||||| ||||| ||| ||||| |||| |||||  ||||||||||    
12497296 cttatagcatatacaaaaacaagttaactttattttatcttttgctataaaaatggcttatgcaagcttatacataa 12497372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 31 - 91
Target Start/End: Original strand, 207670 - 207731
Alignment:
31 taacgttattttattttttgtta-taaaatagcttttgcaaagttatacataaatgcttatc 91  Q
    |||||||||||||| |||||||| ||||||||||| |||||  |||||||||| ||||||||    
207670 taacgttattttatcttttgttactaaaatagcttatgcaagcttatacataagtgcttatc 207731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 103 - 141
Target Start/End: Complemental strand, 24626204 - 24626166
Alignment:
103 tttgtgttataagttgtaaataagttgtttatccaaaca 141  Q
    |||||| |||||| |||||||||||||||||||||||||    
24626204 tttgtgctataagctgtaaataagttgtttatccaaaca 24626166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 6909931 - 6909972
Alignment:
1 aaacaacttatagcatatacacaaacattttaacgttatttt 42  Q
    ||||||||||||||||||||| ||||| |||||| |||||||    
6909931 aaacaacttatagcatatacaaaaacaatttaactttatttt 6909972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 28621169 - 28621226
Alignment:
1 aaacaacttatagcatatacacaaacattttaacgttattttattttttgttataaaa 58  Q
    ||||| ||| |||| |||||| ||||| |||||| ||||||||| |||||||||||||    
28621169 aaacatcttgtagcttatacaaaaacaatttaactttattttatcttttgttataaaa 28621226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University