View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19240_high_23 (Length: 297)
Name: NF19240_high_23
Description: NF19240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19240_high_23 |
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Alignment Details
Target: chr5 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 18 - 288
Target Start/End: Complemental strand, 17744607 - 17744330
Alignment:
| Q |
18 |
ggtacaaatgcaaaaatgttgcctcagatgacaaggtttaaggtggaaagttttggtgcaagaaatgaacaacatggttatggaaaacctcctcttagga |
117 |
Q |
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| T |
17744607 |
ggtacaaatgcaaaaatgttgcctcagatgacaaggtttaaggtggaaagttttggtgcaagaaatgaacaacatggttatggaaaacctcctcttagga |
17744508 |
T |
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| Q |
118 |
gatcaaattcaccacatggtgcacaacttttgtatattt-------agatattgtttttaattaatacaagtgtatctttctttgtagttggaatttgat |
210 |
Q |
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| T |
17744507 |
gatcaaattcaccacatggtgcacaacttttgtatatttagatttaagatagtgtttttaattaaaacaagcatatctttctttgtagttggaatttgat |
17744408 |
T |
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| Q |
211 |
caattatgtgtaccttgaaaattgacttggtgtaatgcagttgtttatgaattttagctactatgttttcagaataat |
288 |
Q |
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| T |
17744407 |
caattatgtgtaccttgaaaatttacttggtgtaatgcagttgtttatgaattttagctactatgttttcagaataat |
17744330 |
T |
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