View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19240_high_37 (Length: 240)
Name: NF19240_high_37
Description: NF19240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19240_high_37 |
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Alignment Details
Target: chr6 (Bit Score: 139; Significance: 7e-73; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 14 - 222
Target Start/End: Original strand, 2574887 - 2575094
Alignment:
| Q |
14 |
agattattctgattcgatcacagcctaaacagttagattaatccaacaaatatgattaagatagaatccaagttgtgtgtgttannnnnnnnnnnnn--a |
111 |
Q |
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| T |
2574887 |
agattattctgattcgatcacagcct---cagttagattaatccaacaaatttgatcaagatagaatccaagttgtgtgtgttaagagagagagagagaa |
2574983 |
T |
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| Q |
112 |
aaccttattgatgtcatggacaaaattgttgcttgatgcgccagaagcactaccaatagagttcataagtctgcctgcaataaacaacaacaaaggaact |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2574984 |
aaccttattgatgtcatggacaaaattgttgcttgatgcgccagaagcactaccaatagagttcataagtctgcctgcaataaacaacaacaaaggaact |
2575083 |
T |
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| Q |
212 |
gatatgccatc |
222 |
Q |
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||||||||||| |
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| T |
2575084 |
gatatgccatc |
2575094 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 112 - 222
Target Start/End: Original strand, 2603000 - 2603110
Alignment:
| Q |
112 |
aaccttattgatgtcatggacaaaattgttgcttgatgcgccagaagcactaccaatagagttcataagtctgcctgcaataaacaacaacaaaggaact |
211 |
Q |
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|||||||||||||||||| |||||||||||| |||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2603000 |
aaccttattgatgtcatgaacaaaattgttgtttgatgtgccagaagcaccaccaatagagttcataagtctgcctgcaataaacaacaacaaaggaact |
2603099 |
T |
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| Q |
212 |
gatatgccatc |
222 |
Q |
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||||||||||| |
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| T |
2603100 |
gatatgccatc |
2603110 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 112 - 200
Target Start/End: Complemental strand, 2429527 - 2429439
Alignment:
| Q |
112 |
aaccttattgatgtcatggacaaaattgttgcttgatgcgccagaagcactaccaatagagttcataagtctgcctgcaataaacaaca |
200 |
Q |
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| T |
2429527 |
aaccttattgacatcatggacaaaattgctgcttgatgttccagaagcactaccaacagagttcataattttgcttgtgataaacaaca |
2429439 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 112 - 208
Target Start/End: Original strand, 2647278 - 2647374
Alignment:
| Q |
112 |
aaccttattgatgtcatggacaaaattgttgcttgatgcgccagaagcactaccaatagagttcataagtctgcctgcaataaacaacaacaaagga |
208 |
Q |
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||||| || ||||| ||||||||||||||||||||||| ||||||| | |||||||||||||||||||| ||| || |||||||| | ||||||| |
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| T |
2647278 |
aacctcatagatgttatggacaaaattgttgcttgatgtgccagaaatagtaccaatagagttcataagtttgcttgagataaacaaaagcaaagga |
2647374 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 111 - 208
Target Start/End: Original strand, 2679723 - 2679820
Alignment:
| Q |
111 |
aaaccttattgatgtcatggacaaaattgttgcttgatgcgccagaagcactaccaatagagttcataagtctgcctgcaataaacaacaacaaagga |
208 |
Q |
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|||||| |||||||| ||| ||||||||| ||||||||| ||||||| | |||||||||||||||||| ||||| || |||||||| | ||||||| |
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| T |
2679723 |
aaacctcattgatgttatgtacaaaattggtgcttgatgagccagaaatagtaccaatagagttcataattctgcttgtgataaacaaaaccaaagga |
2679820 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 14 - 89
Target Start/End: Original strand, 2602897 - 2602971
Alignment:
| Q |
14 |
agattattctgattcgatcacagcctaaacagttagattaatccaacaaatatgattaagatagaatccaagttgt |
89 |
Q |
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||||| |||||||||||||| ||| | |||||||||||||||| |||| || | ||||| |||||||||||||||| |
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| T |
2602897 |
agattgttctgattcgatcaaagc-tgaacagttagattaatctaacagattttattaaaatagaatccaagttgt |
2602971 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 111 - 185
Target Start/End: Complemental strand, 2583142 - 2583068
Alignment:
| Q |
111 |
aaaccttattgatgtcatggacaaaattgttgcttgatgcgccagaagcactaccaatagagttcataagtctgc |
185 |
Q |
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|||||| |||||||| ||||||||||||||| |||||| ||||||| | ||||||||||||||||| ||||| |
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| T |
2583142 |
aaacctcattgatgttatggacaaaattgttctttgatgggccagaaatagaaccaatagagttcataattctgc |
2583068 |
T |
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