View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19240_high_38 (Length: 239)
Name: NF19240_high_38
Description: NF19240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19240_high_38 |
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Alignment Details
Target: chr7 (Bit Score: 141; Significance: 5e-74; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 16 - 160
Target Start/End: Complemental strand, 42751400 - 42751256
Alignment:
| Q |
16 |
taaaaagtaatcatgatacttctagtgtggtatctaggtacgtcgtactttttggagtacatgagcttcatgatatgatcaagcatgtcattttatcctt |
115 |
Q |
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| T |
42751400 |
taaaaagtaatcatgatacttctagtgtggtatctagatacgtcgtactttttggagtacatgagcttcatgatatgatcaagcatgtcattttatcctt |
42751301 |
T |
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| Q |
116 |
ataagtcctctccactaaaataattttattcgggtgtatttatta |
160 |
Q |
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| T |
42751300 |
ataagtcctctccactaaaataattttattcgggtgtatttatta |
42751256 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 152 - 221
Target Start/End: Complemental strand, 42750942 - 42750873
Alignment:
| Q |
152 |
tatttattaaccaaaattcatacatgttgtggaagtctaatccctaatgctagatccaatttgcattgat |
221 |
Q |
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| T |
42750942 |
tatttattaaccaaaattcatacatgttgtggaagtctaattcctaatgctggatccaatttgcattgat |
42750873 |
T |
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