View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19240_high_39 (Length: 237)

Name: NF19240_high_39
Description: NF19240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19240_high_39
NF19240_high_39
[»] chr4 (41 HSPs)
chr4 (1-221)||(46286559-46286770)
chr4 (1-102)||(29510108-29510209)
chr4 (1-101)||(5800374-5800474)
chr4 (1-101)||(49501224-49501324)
chr4 (1-101)||(49507289-49507389)
chr4 (1-101)||(27768474-27768574)
chr4 (1-101)||(32322476-32322576)
chr4 (1-101)||(32889857-32889957)
chr4 (16-101)||(23987607-23987692)
chr4 (16-101)||(30967049-30967134)
chr4 (1-101)||(41725523-41725623)
chr4 (1-101)||(48261488-48261588)
chr4 (1-101)||(51321266-51321366)
chr4 (1-101)||(54341552-54341652)
chr4 (1-101)||(5441812-5441912)
chr4 (1-100)||(28484306-28484406)
chr4 (1-101)||(29855926-29856026)
chr4 (1-101)||(37828121-37828221)
chr4 (1-101)||(50018602-50018702)
chr4 (6-101)||(23671421-23671516)
chr4 (1-101)||(49834525-49834625)
chr4 (1-101)||(54853167-54853267)
chr4 (1-90)||(871782-871870)
chr4 (1-101)||(50517163-50517254)
chr4 (1-100)||(33138771-33138861)
chr4 (27-101)||(37916211-37916285)
chr4 (1-101)||(8084170-8084270)
chr4 (28-101)||(32683746-32683818)
chr4 (8-101)||(55165486-55165579)
chr4 (1-101)||(29469124-29469224)
chr4 (1-61)||(26491165-26491225)
chr4 (8-62)||(6487367-6487421)
chr4 (27-100)||(24966587-24966651)
chr4 (64-100)||(12754489-12754525)
chr4 (12-63)||(51967276-51967327)
chr4 (3-62)||(56424019-56424078)
chr4 (1-58)||(2326703-2326760)
chr4 (12-61)||(40487712-40487761)
chr4 (1-62)||(46862957-46863018)
chr4 (34-62)||(14334394-14334422)
chr4 (1-61)||(42937453-42937513)
[»] scaffold0042 (1 HSPs)
scaffold0042 (1-101)||(57756-57856)
[»] chr1 (42 HSPs)
chr1 (1-101)||(8140922-8141022)
chr1 (1-101)||(5494787-5494887)
chr1 (1-101)||(45272976-45273076)
chr1 (1-100)||(3583595-3583694)
chr1 (6-101)||(46328395-46328490)
chr1 (8-101)||(15834730-15834823)
chr1 (1-101)||(6312985-6313085)
chr1 (1-101)||(25612501-25612601)
chr1 (1-101)||(29396123-29396223)
chr1 (1-101)||(47371614-47371714)
chr1 (6-101)||(48966535-48966630)
chr1 (1-101)||(9322197-9322297)
chr1 (6-101)||(49453104-49453200)
chr1 (1-101)||(51702004-51702104)
chr1 (6-101)||(5209412-5209507)
chr1 (16-101)||(25830953-25831038)
chr1 (1-90)||(25253486-25253575)
chr1 (6-101)||(35177254-35177350)
chr1 (1-101)||(38535835-38535935)
chr1 (1-101)||(38558053-38558153)
chr1 (1-100)||(49971635-49971734)
chr1 (1-91)||(52182318-52182408)
chr1 (27-100)||(28404011-28404084)
chr1 (1-101)||(32760138-32760229)
chr1 (16-101)||(48177147-48177232)
chr1 (1-101)||(4005049-4005149)
chr1 (1-101)||(8147299-8147399)
chr1 (1-101)||(9192006-9192106)
chr1 (8-90)||(27257904-27257986)
chr1 (5-102)||(3593236-3593324)
chr1 (28-101)||(49237032-49237105)
chr1 (1-101)||(1243345-1243445)
chr1 (1-101)||(18798866-18798961)
chr1 (1-101)||(26757597-26757697)
chr1 (1-101)||(41353403-41353503)
chr1 (1-101)||(51106874-51106974)
chr1 (36-101)||(28387141-28387206)
chr1 (6-90)||(15927292-15927376)
chr1 (6-62)||(49231455-49231511)
chr1 (27-92)||(51901943-51902008)
chr1 (12-62)||(7798521-7798571)
chr1 (64-101)||(42304589-42304626)
[»] chr8 (27 HSPs)
chr8 (1-101)||(8029880-8029980)
chr8 (1-101)||(9288185-9288285)
chr8 (1-101)||(10295030-10295130)
chr8 (1-101)||(19717565-19717665)
chr8 (1-101)||(31625718-31625818)
chr8 (1-93)||(32497959-32498051)
chr8 (16-101)||(18958433-18958518)
chr8 (1-101)||(16364116-16364216)
chr8 (1-101)||(18305667-18305767)
chr8 (1-100)||(12522547-12522646)
chr8 (1-98)||(43308199-43308296)
chr8 (13-101)||(6388177-6388265)
chr8 (1-101)||(14781823-14781923)
chr8 (1-101)||(26856515-26856615)
chr8 (1-101)||(39467209-39467309)
chr8 (1-101)||(42305295-42305395)
chr8 (1-101)||(44725482-44725582)
chr8 (16-101)||(43166382-43166467)
chr8 (1-101)||(19484176-19484276)
chr8 (1-100)||(17234676-17234775)
chr8 (1-101)||(24082173-24082273)
chr8 (1-63)||(37131326-37131388)
chr8 (1-62)||(24067106-24067167)
chr8 (6-100)||(7760770-7760864)
chr8 (16-73)||(7466759-7466816)
chr8 (27-60)||(12522487-12522520)
chr8 (13-60)||(41393958-41394005)
[»] chr7 (38 HSPs)
chr7 (1-101)||(37328315-37328415)
chr7 (1-101)||(44256452-44256552)
chr7 (12-101)||(12740778-12740867)
chr7 (6-101)||(33383082-33383177)
chr7 (1-101)||(510054-510154)
chr7 (1-101)||(8675739-8675839)
chr7 (1-101)||(18838818-18838918)
chr7 (1-101)||(28342719-28342819)
chr7 (1-101)||(29614492-29614592)
chr7 (1-101)||(43172115-43172215)
chr7 (13-101)||(29893380-29893468)
chr7 (13-101)||(32884179-32884267)
chr7 (1-101)||(33891931-33892031)
chr7 (13-101)||(37972586-37972674)
chr7 (13-101)||(41827736-41827824)
chr7 (6-101)||(39028495-39028590)
chr7 (16-101)||(23101699-23101784)
chr7 (1-101)||(28034545-28034645)
chr7 (1-101)||(39784515-39784615)
chr7 (1-97)||(40460411-40460507)
chr7 (6-101)||(3023342-3023437)
chr7 (7-101)||(29585922-29586016)
chr7 (1-101)||(7993565-7993665)
chr7 (13-101)||(16709396-16709484)
chr7 (13-101)||(17683632-17683720)
chr7 (1-101)||(44121630-44121730)
chr7 (1-100)||(42610579-42610678)
chr7 (7-101)||(27148806-27148900)
chr7 (1-102)||(14741386-14741487)
chr7 (13-102)||(26201841-26201930)
chr7 (13-62)||(48136937-48136986)
chr7 (1-101)||(4639913-4640013)
chr7 (1-61)||(11735229-11735289)
chr7 (27-100)||(21486105-21486177)
chr7 (6-64)||(33497137-33497195)
chr7 (1-39)||(30823108-30823146)
chr7 (1-101)||(23016953-23017053)
chr7 (73-101)||(47067167-47067195)
[»] chr6 (21 HSPs)
chr6 (1-101)||(16438667-16438767)
chr6 (1-101)||(7497507-7497607)
chr6 (1-101)||(14262128-14262228)
chr6 (1-101)||(31067841-31067941)
chr6 (6-101)||(34758776-34758871)
chr6 (1-101)||(31975691-31975791)
chr6 (1-101)||(2606856-2606956)
chr6 (1-101)||(4200143-4200243)
chr6 (1-101)||(31896046-31896146)
chr6 (16-101)||(30384771-30384856)
chr6 (1-101)||(1463710-1463810)
chr6 (8-100)||(3000202-3000294)
chr6 (1-101)||(6788061-6788161)
chr6 (1-98)||(28900877-28900965)
chr6 (12-101)||(10113830-10113919)
chr6 (1-63)||(31535099-31535161)
chr6 (35-101)||(34773807-34773872)
chr6 (8-63)||(31996294-31996349)
chr6 (12-62)||(8779631-8779681)
chr6 (12-61)||(13461374-13461423)
chr6 (8-60)||(21199556-21199608)
[»] chr5 (20 HSPs)
chr5 (1-101)||(13926341-13926441)
chr5 (8-101)||(39852780-39852873)
chr5 (6-101)||(5651232-5651327)
chr5 (1-101)||(4549950-4550050)
chr5 (1-101)||(5949522-5949621)
chr5 (1-101)||(37014264-37014364)
chr5 (1-101)||(1460838-1460938)
chr5 (13-101)||(4240170-4240258)
chr5 (1-101)||(16548885-16548985)
chr5 (1-100)||(40013397-40013496)
chr5 (1-90)||(29716831-29716920)
chr5 (1-101)||(13999786-13999886)
chr5 (1-101)||(7125205-7125305)
chr5 (1-101)||(28623207-28623307)
chr5 (1-102)||(29758666-29758767)
chr5 (28-101)||(34218430-34218503)
chr5 (31-100)||(21489862-21489931)
chr5 (31-99)||(15672751-15672819)
chr5 (8-62)||(2675121-2675175)
chr5 (8-63)||(33892889-33892944)
[»] chr3 (36 HSPs)
chr3 (1-101)||(48379558-48379658)
chr3 (1-101)||(51737379-51737479)
chr3 (1-101)||(52617664-52617764)
chr3 (6-101)||(26107737-26107832)
chr3 (6-101)||(54629259-54629354)
chr3 (1-99)||(17946638-17946736)
chr3 (12-101)||(52810766-52810855)
chr3 (1-101)||(21386524-21386624)
chr3 (1-101)||(37455255-37455355)
chr3 (13-96)||(20833310-20833393)
chr3 (6-101)||(50761797-50761892)
chr3 (1-101)||(4962771-4962871)
chr3 (12-100)||(7437622-7437710)
chr3 (1-101)||(31645953-31646053)
chr3 (1-101)||(39038498-39038598)
chr3 (1-101)||(44905547-44905647)
chr3 (1-101)||(50903001-50903101)
chr3 (8-101)||(7665552-7665645)
chr3 (16-101)||(23753096-23753181)
chr3 (1-101)||(18750051-18750151)
chr3 (6-101)||(40897539-40897634)
chr3 (1-100)||(43172889-43172988)
chr3 (1-101)||(36673844-36673944)
chr3 (22-101)||(45863231-45863310)
chr3 (1-92)||(33693226-33693317)
chr3 (1-62)||(25049871-25049932)
chr3 (1-101)||(8598620-8598720)
chr3 (1-101)||(49296077-49296177)
chr3 (14-101)||(42736268-42736355)
chr3 (1-100)||(21718453-21718552)
chr3 (12-58)||(16155168-16155214)
chr3 (1-63)||(49458357-49458419)
chr3 (1-102)||(53835922-53836023)
chr3 (1-89)||(45602457-45602545)
chr3 (8-62)||(9818611-9818665)
chr3 (1-62)||(22489524-22489585)
[»] chr2 (32 HSPs)
chr2 (1-101)||(6224269-6224369)
chr2 (1-101)||(13833111-13833211)
chr2 (1-101)||(7027313-7027413)
chr2 (1-101)||(25288573-25288673)
chr2 (1-101)||(28739986-28740086)
chr2 (6-101)||(15224191-15224286)
chr2 (6-101)||(28844995-28845090)
chr2 (8-101)||(10657840-10657933)
chr2 (1-101)||(34342199-34342299)
chr2 (13-101)||(214961-215049)
chr2 (1-101)||(18177681-18177781)
chr2 (1-101)||(26789195-26789295)
chr2 (6-101)||(33136028-33136121)
chr2 (16-101)||(379340-379425)
chr2 (6-101)||(31847263-31847359)
chr2 (1-101)||(18899968-18900068)
chr2 (1-100)||(40829596-40829697)
chr2 (16-90)||(2308769-2308843)
chr2 (36-100)||(3464051-3464115)
chr2 (1-101)||(3575251-3575351)
chr2 (1-63)||(15926377-15926439)
chr2 (3-100)||(43305014-43305111)
chr2 (12-101)||(35404370-35404450)
chr2 (1-61)||(32242246-32242306)
chr2 (1-61)||(32293914-32293973)
chr2 (12-63)||(3991772-3991823)
chr2 (1-63)||(1833746-1833808)
chr2 (12-62)||(12877686-12877736)
chr2 (1-58)||(11153390-11153447)
chr2 (8-61)||(13898477-13898530)
chr2 (8-61)||(14039094-14039147)
chr2 (73-101)||(43825299-43825327)
[»] scaffold0543 (1 HSPs)
scaffold0543 (8-101)||(10934-11027)
[»] scaffold1504 (1 HSPs)
scaffold1504 (1-101)||(1276-1376)
[»] scaffold1128 (1 HSPs)
scaffold1128 (1-101)||(944-1044)
[»] scaffold0110 (1 HSPs)
scaffold0110 (1-93)||(39327-39419)
[»] scaffold0013 (1 HSPs)
scaffold0013 (1-101)||(89241-89341)
[»] scaffold0573 (2 HSPs)
scaffold0573 (1-62)||(8856-8917)
scaffold0573 (64-98)||(8829-8863)
[»] scaffold0246 (1 HSPs)
scaffold0246 (12-61)||(25651-25700)


Alignment Details
Target: chr4 (Bit Score: 169; Significance: 9e-91; HSPs: 41)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 46286770 - 46286559
Alignment:
Q  1 ttactagaaatcgagtttacctcagtgttaacacgattttggtacctaaaaacgtaaactcgataaactcggagagttaacactcgatttgcggaacatt 100  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||         |||||||||||||||||||||||||||||    
T  46286770 ttactagaaatcgagtttaccttagtgttaacacgattttggtacctaaaaacgtaaactcg---------gagagttaacactcgatttgcggaacatt 46286680  T
Q  101 gtacgggagtataaaactcatgacatatgcaagaatgaataaataaaagctcaatcgaaggattatgttgagaatcaccaaattactagaagctctatca 200  Q
    | |||||||||| |||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46286679 gcacgggagtatgaaactcatgacatatgcaagaaggaataactaaaagctcaatcgaaggattatgttgagaatcaccaaattactagaagctctatca 46286580  T
Q  201 ccaaatttgacgagaacgtct 221  Q
    |||||||||||||||||||||    
T  46286579 ccaaatttgacgagaacgtct 46286559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 102
Target Start/End: Original strand, 29510108 - 29510209
Alignment:
Q  1 ttactagaaatcgagtttacctcagtgttaacacgattttggtacctaaaaacgtaaactcgataaactcggagagttaacactcgatttgcggaacatt 100  Q
    |||| |||||| |||||||| |||| ||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  29510108 ttaccagaaattgagtttacatcagagttaacacgattttgatacctaaacacgtaaactcgataaactcggagagttaacactcgatttgcggaacatt 29510207  T
Q  101 gt 102  Q
    ||    
T  29510208 gt 29510209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 5800474 - 5800374
Alignment:
Q  1 ttactagaaatcgagtttacctcagtgttaacacgattttggtacctaaaaacgtaaactcgataaactcggagagttaacactcgatttgcggaacatt 100  Q
    |||| ||||| ||| |||||||||| |||||||||||||| ||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||    
T  5800474 ttaccagaaaccgaatttacctcagagttaacacgatttttgtacctaaaaatgtaaactcgataatctcggagagttaacactcgatttgcggaacatt 5800375  T
Q  101 g 101  Q
    |    
T  5800374 g 5800374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 49501224 - 49501324
Alignment:
Q  1 ttactagaaatcgagtttacctcagtgttaacacgattttggtacctaaaaacgtaaactcgataaactcggagagttaacactcgatttgcggaacatt 100  Q
    |||| ||||| |||||||||||||| |||||||||||||| ||||||||||||||||||||| ||| ||||||||||||||||||||||||| |||||||    
T  49501224 ttaccagaaaccgagtttacctcagagttaacacgatttttgtacctaaaaacgtaaactcggtaatctcggagagttaacactcgatttgcagaacatt 49501323  T
Q  101 g 101  Q
    |    
T  49501324 g 49501324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 49507289 - 49507389
Alignment:
Q  1 ttactagaaatcgagtttacctcagtgttaacacgattttggtacctaaaaacgtaaactcgataaactcggagagttaacactcgatttgcggaacatt 100  Q
    |||| ||||| |||||||||||||| |||||||||||||| ||||||||||||||||||||| ||| ||||||||||||||||||||||||| |||||||    
T  49507289 ttaccagaaaccgagtttacctcagagttaacacgatttttgtacctaaaaacgtaaactcggtaatctcggagagttaacactcgatttgcagaacatt 49507388  T
Q  101 g 101  Q
    |    
T  49507389 g 49507389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 27768574 - 27768474
Alignment:
Q  1 ttactagaaatcgagtttacctcagtgttaacacgattttggtacctaaaaacgtaaactcgataaactcggagagttaacactcgatttgcggaacatt 100  Q
    |||| ||||| ||| |||||||||| |||||||||||||| ||||||||||| ||||||||||||| |||||||| ||||||||||||||||||||||||    
T  27768574 ttaccagaaaccgattttacctcagagttaacacgatttttgtacctaaaaatgtaaactcgataatctcggagatttaacactcgatttgcggaacatt 27768475  T
Q  101 g 101  Q
    |    
T  27768474 g 27768474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 32322576 - 32322476
Alignment:
Q  1 ttactagaaatcgagtttacctcagtgttaacacgattttggtacctaaaaacgtaaactcgataaactcggagagttaacactcgatttgcggaacatt 100  Q
    |||| ||||| ||||||||||||||  ||||||||||||| ||||||||||||||||||||| ||| |||||||||||||||||||| ||||||||||||    
T  32322576 ttaccagaaaccgagtttacctcagaattaacacgatttttgtacctaaaaacgtaaactcggtaatctcggagagttaacactcgacttgcggaacatt 32322477  T
Q  101 g 101  Q
    |    
T  32322476 g 32322476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 32889957 - 32889857
Alignment:
Q  1 ttactagaaatcgagtttacctcagtgttaacacgattttggtacctaaaaacgtaaactcgataaactcggagagttaacactcgatttgcggaacatt 100  Q
    |||| |||||| |||||||| |||  |||||||||||||||||||||||| ||||||||||| |||| ||||||||||||||||||||||||||||||||    
T  32889957 ttaccagaaattgagtttacatcaaagttaacacgattttggtacctaaacacgtaaactcggtaaattcggagagttaacactcgatttgcggaacatt 32889858  T
Q  101 g 101  Q
    |    
T  32889857 g 32889857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 16 - 101
Target Start/End: Complemental strand, 23987692 - 23987607
Alignment:
Q  16 tttacctcagtgttaacacgattttggtacctaaaaacgtaaactcgataaactcggagagttaacactcgatttgcggaacattg 101  Q
    |||||||||| |||||||||||||| ||||||||||||||||||||| ||| ||||||||| ||||||||||||||||||||||||    
T  23987692 tttacctcagagttaacacgatttttgtacctaaaaacgtaaactcggtaatctcggagaggtaacactcgatttgcggaacattg 23987607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 16 - 101
Target Start/End: Original strand, 30967049 - 30967134
Alignment:
Q  16 tttacctcagtgttaacacgattttggtacctaaaaacgtaaactcgataaactcggagagttaacactcgatttgcggaacattg 101  Q
    |||| ||||| |||||||||||||| ||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||    
T  30967049 tttatctcagagttaacacgatttttgtacctaaaaacgtaaactcggtaatctcggagagttaacactcgatttgcggaacattg 30967134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 41725623 - 41725523
Alignment:
Q  1 ttactagaaatcgagtttacctcagtgttaacacgattttggtacctaaaaacgtaaactcgataaactcggagagttaacactcgatttgcggaacatt 100  Q
    |||| |||||||||||||||||||| |||||||||||||| ||||||||||||||||||| | ||| | ||||||||||||||||||||||  |||||||    
T  41725623 ttaccagaaatcgagtttacctcagagttaacacgatttttgtacctaaaaacgtaaactaggtaatcacggagagttaacactcgatttgaagaacatt 41725524  T
Q  101 g 101  Q
    |    
T  41725523 g 41725523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 48261588 - 48261488
Alignment:
Q  1 ttactagaaatcgagtttacctcagtgttaacacgattttggtacctaaaaacgtaaactcgataaactcggagagttaacactcgatttgcggaacatt 100  Q
    |||| ||||| ||| |||||||||| |||||||||||||| ||||||||||| || |||||||||| |||||||| ||||||||||||||||||||||||    
T  48261588 ttaccagaaaccgattttacctcagagttaacacgatttttgtacctaaaaatgtcaactcgataatctcggagatttaacactcgatttgcggaacatt 48261489  T
Q  101 g 101  Q
    |    
T  48261488 g 48261488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 51321366 - 51321266
Alignment:
Q  1 ttactagaaatcgagtttacctcagtgttaacacgattttggtacctaaaaacgtaaactcgataaactcggagagttaacactcgatttgcggaacatt 100  Q
    |||| ||||| ||| ||||| |||| |||||||||||||| ||||||||||| |||||||||||||  ||||||||||||||||||||||||||||||||    
T  51321366 ttaccagaaaccgattttacgtcagagttaacacgatttttgtacctaaaaatgtaaactcgataatatcggagagttaacactcgatttgcggaacatt 51321267  T
Q  101 g 101  Q
    |    
T  51321266 g 51321266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 54341652 - 54341552
Alignment:
Q  1 ttactagaaatcgagtttacctcagtgttaacacgattttggtacctaaaaacgtaaactcgataaactcggagagttaacactcgatttgcggaacatt 100  Q
    |||| ||||| ||| |||||||||| ||| |||||||||| ||||||||||| ||||||||||||| |||||||| ||||||||||||||||||||||||    
T  54341652 ttaccagaaaccgattttacctcagagtttacacgatttttgtacctaaaaatgtaaactcgataatctcggagatttaacactcgatttgcggaacatt 54341553  T
Q  101 g 101  Q
    |    
T  54341552 g 54341552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 5441912 - 5441812
Alignment:
Q  1 ttactagaaatcgagtttacctcagtgttaacacgattttggtacctaaaaacgtaaactcgataaactcggagagttaacactcgatttgcggaacatt 100  Q
    |||| ||||| ||| |||||||||| |||||||||||||| ||||||||||| ||||||||||||| |||||||| |||||| ||||||| |||||||||    
T  5441912 ttaccagaaaccgattttacctcagagttaacacgatttttgtacctaaaaatgtaaactcgataatctcggagatttaacattcgatttacggaacatt 5441813  T
Q  101 g 101  Q
    |    
T  5441812 g 5441812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 28484406 - 28484306
Alignment:
Q  1 ttactagaaatcgagtttacctcagtgttaacacga-ttttggtacctaaaaacgtaaactcgataaactcggagagttaacactcgatttgcggaacat 99  Q
    |||| ||||| |||||||||||||| |||||||||| |||| ||||||||||||||||||||| ||| ||| |||||||||||||| |||||||||||||    
T  28484406 ttaccagaaaccgagtttacctcagagttaacacgactttttgtacctaaaaacgtaaactcggtaatctcagagagttaacactcaatttgcggaacat 28484307  T
Q  100 t 100  Q
    |    
T  28484306 t 28484306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 29856026 - 29855926
Alignment:
Q  1 ttactagaaatcgagtttacctcagtgttaacacgattttggtacctaaaaacgtaaactcgataaactcggagagttaacactcgatttgcggaacatt 100  Q
    |||| |||||||||||||||||||| |||||||||||||| |||| |||||||||||||||| ||| |||||||| |||| |||||||||  ||||||||    
T  29856026 ttaccagaaatcgagtttacctcagagttaacacgatttttgtacataaaaacgtaaactcggtaatctcggagaattaatactcgatttatggaacatt 29855927  T
Q  101 g 101  Q
    |    
T  29855926 g 29855926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 37828121 - 37828221
Alignment:
Q  1 ttactagaaatcgagtttacctcagtgttaacacgattttggtacctaaaaacgtaaactcgataaactcggagagttaacactcgatttgcggaacatt 100  Q
    |||| ||||| ||| |||||||||| |||||||||||||| ||| ||||||| ||||||||||||| |||||||| |||||| |||||||||||||||||    
T  37828121 ttaccagaaaccgattttacctcagagttaacacgatttttgtatctaaaaatgtaaactcgataatctcggagatttaacattcgatttgcggaacatt 37828220  T
Q  101 g 101  Q
    |    
T  37828221 g 37828221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 50018702 - 50018602
Alignment:
Q  1 ttactagaaatcgagtttacctcagtgttaacacgattttggtacctaaaaacgtaaactcgataaactcggagagttaacactcgatttgcggaacatt 100  Q
    |||| ||||| ||| |||||||||| ||||||| |||||| ||||||||||| ||||||||| ||| ||||||||||||||||||||||||| |||||||    
T  50018702 ttaccagaaaccgattttacctcagagttaacatgatttttgtacctaaaaatgtaaactcggtaatctcggagagttaacactcgatttgcagaacatt 50018603  T
Q  101 g 101  Q
    |    
T  50018602 g 50018602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 6 - 101
Target Start/End: Original strand, 23671421 - 23671516
Alignment:
Q  6 agaaatcgagtttacctcagtgttaacacgattttggtacctaaaaacgtaaactcgataaactcggagagttaacactcgatttgcggaacattg 101  Q
    |||||||||||||||||| | |||||||||||||||||||||||| |||||||  || ||||||| ||| | ||||||||||||||||||||||||    
T  23671421 agaaatcgagtttacctccgagttaacacgattttggtacctaaacacgtaaaaccggtaaactcagagtgctaacactcgatttgcggaacattg 23671516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 49834525 - 49834625
Alignment:
Q  1 ttactagaaatcgagtttacctcagtgttaacacgattttggtacctaaaaacgtaaactcgataaactcggagagttaacactcgatttgcggaacatt 100  Q
    |||| ||||| |||||||||||||| |||||||||||||| ||| ||||||||||||||||| ||| ||  |||||||||||||| |||| |||||||||    
T  49834525 ttaccagaaaccgagtttacctcagagttaacacgatttttgtagctaaaaacgtaaactcggtaatcttagagagttaacactcaatttacggaacatt 49834624  T
Q  101 g 101  Q
    |    
T  49834625 g 49834625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 54853167 - 54853267
Alignment:
Q  1 ttactagaaatcgagtttacctcagtgttaacacgattttggtacctaaaaacgtaaactcgataaactcggagagttaacactcgatttgcggaacatt 100  Q
    |||| ||||| ||| |||||||||| |||||||| ||||| |||| |||||| ||||||||| ||| |||||||||||||||||||||||| ||||||||    
T  54853167 ttacgagaaaccgattttacctcagagttaacacaatttttgtacataaaaaggtaaactcggtaatctcggagagttaacactcgatttgtggaacatt 54853266  T
Q  101 g 101  Q
    |    
T  54853267 g 54853267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 871870 - 871782
Alignment:
Q  1 ttactagaaatcgagtttacctcagtgttaacacgattttggtacctaaaaacgtaaactcgataaactcggagagttaacactcgattt 90  Q
    |||| |||||||||||||||||| | ||| ||||||||| |||||||||||||||||||||| ||||||||  |||||||||||||||||    
T  871870 ttaccagaaatcgagtttacctccgagttgacacgattt-ggtacctaaaaacgtaaactcggtaaactcgacgagttaacactcgattt 871782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 50517254 - 50517163
Alignment:
Q  1 ttactagaaatcgagtttacctcagtgttaacacgattttggtacctaaaaacgtaaactcgataaactcggagagttaacactcgatttgcggaacatt 100  Q
    |||| |||||||||||||||||||  |||||||||||||||||||||||| |||||||         |||||||||||||||||||||||||||||||||    
T  50517254 ttaccagaaatcgagtttacctcaaagttaacacgattttggtacctaaacacgtaaa---------ctcggagagttaacactcgatttgcggaacatt 50517164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 33138861 - 33138771
Alignment:
Q  1 ttactagaaatcgagtttacctcagtgttaacacgattttggtacctaaaaacgtaaactcgataaactcggagagttaacactcgatttgcggaacatt 100  Q
    |||| |||||||||||||||||| | |||||||||||||||||||||||| |||||||         |||||||||||||||||||||||||||||||||    
T  33138861 ttaccagaaatcgagtttacctccgagttaacacgattttggtacctaaacacgtaaa---------ctcggagagttaacactcgatttgcggaacatt 33138771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 27 - 101
Target Start/End: Complemental strand, 37916285 - 37916211
Alignment:
Q  27 gttaacacgattttggtacctaaaaacgtaaactcgataaactcggagagttaacactcgatttgcggaacattg 101  Q
    |||||||| ||||| |||| |||||| ||||||||||||| |||||||||||||||||| |||||||||||||||    
T  37916285 gttaacacaatttttgtacataaaaatgtaaactcgataatctcggagagttaacactcaatttgcggaacattg 37916211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 8084270 - 8084170
Alignment:
Q  1 ttactagaaatcgagtttacctcagtgttaacacgattttggtacctaaaaacgtaaactcgataaactcggagagttaacactcgatttgcggaacatt 100  Q
    ||||||||||||||||||||||| | ||||||||| |||| | ||||||| ||||||||||| ||||||||  ||||| |||| || |||| ||||||||    
T  8084270 ttactagaaatcgagtttacctccgagttaacacgtttttagcacctaaacacgtaaactcggtaaactcgccgagttgacacgcggtttgtggaacatt 8084171  T
Q  101 g 101  Q
    |    
T  8084170 g 8084170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 28 - 101
Target Start/End: Original strand, 32683746 - 32683818
Alignment:
Q  28 ttaacacgattttggtacctaaaaacgtaaactcgataaactcggagagttaacactcgatttgcggaacattg 101  Q
    ||||||||||||| |||||||||||||||| |||| ||| ||| |||||||||||||||||||| |||||||||    
T  32683746 ttaacacgatttttgtacctaaaaacgtaa-ctcggtaatctctgagagttaacactcgatttgtggaacattg 32683818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 8 - 101
Target Start/End: Complemental strand, 55165579 - 55165486
Alignment:
Q  8 aaatcgagtttacctcagtgttaacacgattttggtacctaaaaacgtaaactcgataaactcggagagttaacactcgatttgcggaacattg 101  Q
    ||||| ||||||||||   ||||| ||||||||||||| |||||||||||||||  ||||||||  |||||| ||||||||||| |||||||||    
T  55165579 aaatcaagtttacctccaagttaatacgattttggtacgtaaaaacgtaaactcagtaaactcgacgagttagcactcgatttgtggaacattg 55165486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 29469224 - 29469124
Alignment:
Q  1 ttactagaaatcgagtttacctcagtgttaacacgattttggtacctaaaaacgtaaactcgataaactcggagagttaacactcgatttgcggaacatt 100  Q
    |||| |||||||||||||||||| | ||||||||| |||| | ||||||| ||||||||||| ||||||||  || || |||| ||||||| | ||||||    
T  29469224 ttaccagaaatcgagtttacctccgagttaacacgtttttagcacctaaacacgtaaactcggtaaactcgccgaattgacacgcgatttgtgaaacatt 29469125  T
Q  101 g 101  Q
    |    
T  29469124 g 29469124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 26491165 - 26491225
Alignment:
Q  1 ttactagaaatcgagtttacctcagtgttaacacgattttggtacctaaaaacgtaaactc 61  Q
    |||| ||||| |||||||||||||   ||||||||||||||||||||||| ||||||||||    
T  26491165 ttaccagaaaccgagtttacctcaaatttaacacgattttggtacctaaacacgtaaactc 26491225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 8 - 62
Target Start/End: Original strand, 6487367 - 6487421
Alignment:
Q  8 aaatcgagtttacctcagtgttaacacgattttggtacctaaaaacgtaaactcg 62  Q
    |||||||||||||||| | ||||||||| |||||  |||||||||||||||||||    
T  6487367 aaatcgagtttacctccgagttaacacgtttttgccacctaaaaacgtaaactcg 6487421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 27 - 100
Target Start/End: Original strand, 24966587 - 24966651
Alignment:
Q  27 gttaacacgattttggtacctaaaaacgtaaactcgataaactcggagagttaacactcgatttgcggaacatt 100  Q
    |||||||||||||||||||||||| |||||||         |||||||||||||||||||||||||| ||||||    
T  24966587 gttaacacgattttggtacctaaacacgtaaa---------ctcggagagttaacactcgatttgcgaaacatt 24966651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 64 - 100
Target Start/End: Complemental strand, 12754525 - 12754489
Alignment:
Q  64 taaactcggagagttaacactcgatttgcggaacatt 100  Q
    ||||||||| |||||||||||||||||||||||||||    
T  12754525 taaactcggcgagttaacactcgatttgcggaacatt 12754489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 12 - 63
Target Start/End: Complemental strand, 51967327 - 51967276
Alignment:
Q  12 cgagtttacctcagtgttaacacgattttggtacctaaaaacgtaaactcga 63  Q
    |||||||||||| | ||||||||| |||||  ||||||||||||||||||||    
T  51967327 cgagtttacctccgagttaacacgtttttgccacctaaaaacgtaaactcga 51967276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 3 - 62
Target Start/End: Original strand, 56424019 - 56424078
Alignment:
Q  3 actagaaatcgagtttacctcagtgttaacacgattttggtacctaaaaacgtaaactcg 62  Q
    |||| ||| |||||||||||| | ||||||||| |||||  |||||||||||||||||||    
T  56424019 actaaaaaccgagtttacctccgagttaacacgtttttgccacctaaaaacgtaaactcg 56424078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 2326703 - 2326760
Alignment:
Q  1 ttactagaaatcgagtttacctcagtgttaacacgattttggtacctaaaaacgtaaa 58  Q
    |||||||||| | ||||||| ||   ||| ||||||||||||||||||||||||||||    
T  2326703 ttactagaaaacaagtttacatccaagtttacacgattttggtacctaaaaacgtaaa 2326760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 12 - 61
Target Start/End: Original strand, 40487712 - 40487761
Alignment:
Q  12 cgagtttacctcagtgttaacacgattttggtacctaaaaacgtaaactc 61  Q
    |||||||||||| | ||||||||| |||||  ||||||||||||||||||    
T  40487712 cgagtttacctccgagttaacacgtttttgccacctaaaaacgtaaactc 40487761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 46862957 - 46863018
Alignment:
Q  1 ttactagaaatcgagtttacctcagtgttaacacgattttggtacctaaaaacgtaaactcg 62  Q
    |||| ||||||||| ||||| |||  |||||||| ||||| ||||||||| |||||||||||    
T  46862957 ttaccagaaatcgaatttacttcatagttaacacaattttagtacctaaacacgtaaactcg 46863018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 62
Target Start/End: Complemental strand, 14334422 - 14334394
Alignment:
Q  34 cgattttggtacctaaaaacgtaaactcg 62  Q
    |||||||||||||||||||||||||||||    
T  14334422 cgattttggtacctaaaaacgtaaactcg 14334394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 42937453 - 42937513
Alignment:
Q  1 ttactagaaatcgagtttacctcagtgttaacacgattttggtacctaaaaacgtaaactc 61  Q
    |||| |||||||||||||||||| | ||||| ||| |||| | ||||||| ||||||||||    
T  42937453 ttaccagaaatcgagtttacctccgagttaaaacgcttttagcacctaaatacgtaaactc 42937513  T

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Target: scaffold0042 (Bit Score: 81; Significance: 3e-38; HSPs: 1)
Name: scaffold0042
Description:

Target: scaffold0042; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 57756 - 57856
Alignment:
Q  1 ttactagaaatcgagtttacctcagtgttaacacgattttggtacctaaaaacgtaaactcgataaactcggagagttaacactcgatttgcggaacatt 100  Q
    |||||||||| |||||||||||||| |||||||||||||| ||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||    
T  57756 ttactagaaaccgagtttacctcagagttaacacgatttttgtacctaaaaacgtaaactcggtaatctcggagagttaacactcgatttgcggaacatt 57855  T
Q  101 g 101  Q
    |    
T  57856 g 57856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 81; Significance: 3e-38; HSPs: 42)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 8140922 - 8141022
Alignment:
Q  1 ttactagaaatcgagtttacctcagtgttaacacgattttggtacctaaaaacgtaaactcgataaactcggagagttaacactcgatttgcggaacatt 100  Q
    |||| ||||||||| |||||||||| |||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  8140922 ttaccagaaatcgattttacctcagagttaacacgatttttgtacctaaaaacgtaaactcgataatctcggagagttaacactcgatttgcggaacatt 8141021  T
Q  101 g 101  Q
    |    
T  8141022 g 8141022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 5494787 - 5494887
Alignment:
Q  1 ttactagaaatcgagtttacctcagtgttaacacgattttggtacctaaaaacgtaaactcgataaactcggagagttaacactcgatttgcggaacatt 100  Q
    |||| ||||| |||||||||||||| |||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||| ||||||||||||||    
T  5494787 ttaccagaaaccgagtttacctcagagttaacacgattttggtacctaaaaacgtaaactcggtaatctcggagagttaacactcaatttgcggaacatt 5494886  T
Q  101 g 101  Q
    |    
T  5494887 g 5494887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 45273076 - 45272976
Alignment:
Q  1 ttactagaaatcgagtttacctcagtgttaacacgattttggtacctaaaaacgtaaactcgataaactcggagagttaacactcgatttgcggaacatt 100  Q
    |||| ||||| |||||||||||||| |||||||| ||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  45273076 ttaccagaaaccgagtttacctcagagttaacacaatttttgtacctaaaaacgtaaactcgataatctcggagagttaacactcgatttgcggaacatt 45272977  T
Q  101 g 101  Q
    |    
T  45272976 g 45272976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 3583595 - 3583694
Alignment:
Q  1 ttactagaaatcgagtttacctcagtgttaacacgattttggtacctaaaaacgtaaactcgataaactcggagagttaacactcgatttgcggaacatt 100  Q
    |||||||||| ||||||||| ||   ||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  3583595 ttactagaaaccgagtttacttctaagttaacacgatttcggtacctaaaaacgtaaactcggtaaactcggagagttaacactcgatttgcggaacatt 3583694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 6 - 101
Target Start/End: Complemental strand, 46328490 - 46328395
Alignment:
Q  6 agaaatcgagtttacctcagtgttaacacgattttggtacctaaaaacgtaaactcgataaactcggagagttaacactcgatttgcggaacattg 101  Q
    ||||| |||||||||||||| |||||||||||||| ||||||||||||||||||||| ||| |||||||| |||||||||||||||||||||||||    
T  46328490 agaaaccgagtttacctcagagttaacacgatttttgtacctaaaaacgtaaactcggtaatctcggagaattaacactcgatttgcggaacattg 46328395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 8 - 101
Target Start/End: Original strand, 15834730 - 15834823
Alignment:
Q  8 aaatcgagtttacctcagtgttaacacgattttggtacctaaaaacgtaaactcgataaactcggagagttaacactcgatttgcggaacattg 101  Q
    ||||||| |||||||||| |||||||||||||| ||||||||||| ||||||||| ||| ||||||||||||||||||||||||||||||||||    
T  15834730 aaatcgaatttacctcagagttaacacgatttttgtacctaaaaatgtaaactcggtaatctcggagagttaacactcgatttgcggaacattg 15834823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 6313085 - 6312985
Alignment:
Q  1 ttactagaaatcgagtttacctcagtgttaacacgattttggtacctaaaaacgtaaactcgataaactcggagagttaacactcgatttgcggaacatt 100  Q
    |||| ||||| ||| |||||||||| |||||||||||||| ||||||||||| ||||||||||||| |||||||| ||||||||||||||||||||||||    
T  6313085 ttaccagaaaccgattttacctcagagttaacacgatttttgtacctaaaaatgtaaactcgataatctcggagatttaacactcgatttgcggaacatt 6312986  T
Q  101 g 101  Q
    |    
T  6312985 g 6312985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 25612601 - 25612501
Alignment:
Q  1 ttactagaaatcgagtttacctcagtgttaacacgattttggtacctaaaaacgtaaactcgataaactcggagagttaacactcgatttgcggaacatt 100  Q
    |||| ||||| ||| |||||||||| |||||||||||||| ||||||||||| ||||||||||||| |||||||| ||||||||||||||||||||||||    
T  25612601 ttaccagaaaccgattttacctcagagttaacacgatttttgtacctaaaaatgtaaactcgataatctcggagatttaacactcgatttgcggaacatt 25612502  T
Q  101 g 101  Q
    |    
T  25612501 g 25612501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 29396123 - 29396223
Alignment:
Q  1 ttactagaaatcgagtttacctcagtgttaacacgattttggtacctaaaaacgtaaactcgataaactcggagagttaacactcgatttgcggaacatt 100  Q
    |||| ||||| ||| |||||||||| |||||||||||||| ||||||||||| ||||||||||||| |||||||| ||||||||||||||||||||||||    
T  29396123 ttaccagaaaccgattttacctcagagttaacacgatttttgtacctaaaaatgtaaactcgataatctcggagatttaacactcgatttgcggaacatt 29396222  T
Q  101 g 101  Q
    |    
T  29396223 g 29396223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 47371614 - 47371714
Alignment:
Q  1 ttactagaaatcgagtttacctcagtgttaacacgattttggtacctaaaaacgtaaactcgataaactcggagagttaacactcgatttgcggaacatt 100  Q
    |||| |||||||||||||||||| | |||||||||||||||||||||||  ||||||||||||||||||| ||| |||||||||||||||||| ||||||    
T  47371614 ttaccagaaatcgagtttacctccgagttaacacgattttggtacctaagtacgtaaactcgataaactcagagtgttaacactcgatttgcgaaacatt 47371713  T
Q  101 g 101  Q
    |    
T  47371714 g 47371714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 6 - 101
Target Start/End: Original strand, 48966535 - 48966630
Alignment:
Q  6 agaaatcgagtttacctcagtgttaacacgattttggtacctaaaaacgtaaactcgataaactcggagagttaacactcgatttgcggaacattg 101  Q
    ||||||| |||||||||||| |||||||||||||||||||||||| ||||||||||  |||||||| ||||||||| |||||||||||||||||||    
T  48966535 agaaatcaagtttacctcagagttaacacgattttggtacctaaacacgtaaactcagtaaactcgaagagttaaccctcgatttgcggaacattg 48966630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 9322197 - 9322297
Alignment:
Q  1 ttactagaaatcgagtttacctcagtgttaacacgattttggtacctaaaaacgtaaactcgataaactcggagagttaacactcgatttgcggaacatt 100  Q
    |||| ||||| ||| |||||||||| |||||||||||||| ||||||||||| ||||||||||||| |||||||| |||||||||||||| |||||||||    
T  9322197 ttaccagaaaccgattttacctcagagttaacacgatttttgtacctaaaaatgtaaactcgataatctcggagatttaacactcgatttacggaacatt 9322296  T
Q  101 g 101  Q
    |    
T  9322297 g 9322297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 6 - 101
Target Start/End: Original strand, 49453104 - 49453200
Alignment:
Q  6 agaaatcgagtttacctcagtgttaacacgatttt-ggtacctaaaaacgtaaactcgataaactcggagagttaacactcgatttgcggaacattg 101  Q
    |||||||||||||||||||| |||||||||||||| |||||||||| || |||||| | |||||||||| |||||||||||||||||||||||||||    
T  49453104 agaaatcgagtttacctcagagttaacacgatttttggtacctaaacacataaactaggtaaactcggacagttaacactcgatttgcggaacattg 49453200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 51702104 - 51702004
Alignment:
Q  1 ttactagaaatcgagtttacctcagtgttaacacgattttggtacctaaaaacgtaaactcgataaactcggagagttaacactcgatttgcggaacatt 100  Q
    |||| ||||| ||| |||||||||| |||||||| ||||| ||||||||||| ||||||||||||| |||||||| ||||||||||||||||||||||||    
T  51702104 ttaccagaaaccgattttacctcagagttaacacaatttttgtacctaaaaatgtaaactcgataatctcggagatttaacactcgatttgcggaacatt 51702005  T
Q  101 g 101  Q
    |    
T  51702004 g 51702004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 6 - 101
Target Start/End: Original strand, 5209412 - 5209507
Alignment:
Q  6 agaaatcgagtttacctcagtgttaacacgattttggtacctaaaaacgtaaactcgataaactcggagagttaacactcgatttgcggaacattg 101  Q
    |||||||||||| ||||| | |||||||||||||||||||||||| |||||||  |||||||||| ||| ||||||||||||||||||||||||||    
T  5209412 agaaatcgagttgacctccgagttaacacgattttggtacctaaacacgtaaaaacgataaactcagagtgttaacactcgatttgcggaacattg 5209507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 16 - 101
Target Start/End: Original strand, 25830953 - 25831038
Alignment:
Q  16 tttacctcagtgttaacacgattttggtacctaaaaacgtaaactcgataaactcggagagttaacactcgatttgcggaacattg 101  Q
    |||| ||||| |||||||||||||| ||||||||||||||||||||| ||| |||||||||||||||||||||||| |||||||||    
T  25830953 tttatctcagagttaacacgatttttgtacctaaaaacgtaaactcggtaatctcggagagttaacactcgatttgtggaacattg 25831038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 25253575 - 25253486
Alignment:
Q  1 ttactagaaatcgagtttacctcagtgttaacacgattttggtacctaaaaacgtaaactcgataaactcggagagttaacactcgattt 90  Q
    |||| ||||| ||| ||||||||||| |||||||||||||||||||||||||| |||||||| ||||||| |||| ||||||||||||||    
T  25253575 ttaccagaaaccgaatttacctcagtattaacacgattttggtacctaaaaacataaactcggtaaactcagagaattaacactcgattt 25253486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 6 - 101
Target Start/End: Original strand, 35177254 - 35177350
Alignment:
Q  6 agaaatcgagtttacctcagtgttaacacgattttggtacctaaaaacgtaaactcgataaactcggagagtt-aacactcgatttgcggaacattg 101  Q
    |||||||||||||||||| |  |||||||||||||||||||||||||| |||| | ||||||||||||| ||| ||||||||||||||||| |||||    
T  35177254 agaaatcgagtttacctctgaattaacacgattttggtacctaaaaacataaatttgataaactcggagtgttaaacactcgatttgcggaccattg 35177350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 38535835 - 38535935
Alignment:
Q  1 ttactagaaatcgagtttacctcagtgttaacacgattttggtacctaaaaacgtaaactcgataaactcggagagttaacactcgatttgcggaacatt 100  Q
    |||| ||||| | |||||||||||| |||||||| ||||| ||| ||||||||||||||||| ||| || |||||||||| |||||||||||||||||||    
T  38535835 ttaccagaaacccagtttacctcagagttaacacaatttttgtaactaaaaacgtaaactcggtaatcttggagagttaaaactcgatttgcggaacatt 38535934  T
Q  101 g 101  Q
    |    
T  38535935 g 38535935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 38558053 - 38558153
Alignment:
Q  1 ttactagaaatcgagtttacctcagtgttaacacgattttggtacctaaaaacgtaaactcgataaactcggagagttaacactcgatttgcggaacatt 100  Q
    |||| ||||| | |||||||||||| |||||||| ||||| ||| ||||||||||||||||| ||| || |||||||||| |||||||||||||||||||    
T  38558053 ttaccagaaacccagtttacctcagagttaacacaatttttgtaactaaaaacgtaaactcggtaatcttggagagttaaaactcgatttgcggaacatt 38558152  T
Q  101 g 101  Q
    |    
T  38558153 g 38558153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 49971635 - 49971734
Alignment:
Q  1 ttactagaaatcgagtttacctcagtgttaacacgattttggtacctaaaaacgtaaactcgataaactcggagagttaacactcgatttgcggaacatt 100  Q
    |||| ||||| |||||||||||| | ||| |||||||||||||||||||||||||||||||| ||||||| |  |||||||| |||||||| ||||||||    
T  49971635 ttaccagaaaacgagtttacctccgagttgacacgattttggtacctaaaaacgtaaactcggtaaactcagtaagttaacattcgatttgtggaacatt 49971734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 91
Target Start/End: Complemental strand, 52182408 - 52182318
Alignment:
Q  1 ttactagaaatcgagtttacctcagtgttaacacgattttggtacctaaaaacgtaaactcgataaactcggagagttaacactcgatttg 91  Q
    |||| ||||||||| |||||||| |  || |||||||||  ||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  52182408 ttaccagaaatcgaatttacctccgaattgacacgatttcagtacctaaaaacgtaaactcgataaactcggcgagttaacactcgatttg 52182318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 27 - 100
Target Start/End: Original strand, 28404011 - 28404084
Alignment:
Q  27 gttaacacgattttggtacctaaaaacgtaaactcgataaactcggagagttaacactcgatttgcggaacatt 100  Q
    |||||||||||||||||||||||||| ||||||||  |||| ||| ||||||||||||||||||||||||||||    
T  28404011 gttaacacgattttggtacctaaaaatgtaaactcagtaaattcgaagagttaacactcgatttgcggaacatt 28404084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 32760138 - 32760229
Alignment:
Q  1 ttactagaaatcgagtttacctcagtgttaacacgattttggtacctaaaaacgtaaactcgataaactcggagagttaacactcgatttgcggaacatt 100  Q
    |||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||          ||| |||||||||||||||||||||||||    
T  32760138 ttactagaaaccgagtttacctcagagttaacacgattttggtacctaaaaacgtaaactca---------gagtgttaacactcgatttgcggaacatt 32760228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 16 - 101
Target Start/End: Original strand, 48177147 - 48177232
Alignment:
Q  16 tttacctcagtgttaacacgattttggtacctaaaaacgtaaactcgataaactcggagagttaacactcgatttgcggaacattg 101  Q
    |||||||||| ||||||||||||||  |||||||||||||||||||  ||| ||| ||||||||| |||||||||||| |||||||    
T  48177147 tttacctcagagttaacacgatttttctacctaaaaacgtaaactcagtaatctcagagagttaatactcgatttgcgaaacattg 48177232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 4005149 - 4005049
Alignment:
Q  1 ttactagaaatcgagtttacctcagtgttaacacgattttggtacctaaaaacgtaaactcgataaactcggagagttaacactcgatttgcggaacatt 100  Q
    |||| |||||||||||||||||| | ||||||||| |||| | ||||||| ||||||||||| ||||||||  ||||| |||| ||||||| ||||||||    
T  4005149 ttaccagaaatcgagtttacctccgagttaacacgtttttagcacctaaacacgtaaactcggtaaactcgccgagttgacacgcgatttgtggaacatt 4005050  T
Q  101 g 101  Q
    |    
T  4005049 g 4005049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 8147399 - 8147299
Alignment:
Q  1 ttactagaaatcgagtttacctcagtgttaacacgattttggtacctaaaaacgtaaactcgataaactcggagagttaacactcgatttgcggaacatt 100  Q
    |||| |||||||||||||||||| | ||||||||| |||| | ||||||| ||||||||||| ||||||||  ||||| |||| ||||||| ||||||||    
T  8147399 ttaccagaaatcgagtttacctccgagttaacacgtttttagcacctaaacacgtaaactcggtaaactcgctgagttgacacgcgatttgtggaacatt 8147300  T
Q  101 g 101  Q
    |    
T  8147299 g 8147299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 9192106 - 9192006
Alignment:
Q  1 ttactagaaatcgagtttacctcagtgttaacacgattttggtacctaaaaacgtaaactcgataaactcggagagttaacactcgatttgcggaacatt 100  Q
    |||| |||||||||||||||||| | ||||||||| |||| | ||||||| ||||||||||| ||||||||  ||||| |||| ||||||| ||||||||    
T  9192106 ttaccagaaatcgagtttacctccgagttaacacgtttttagcacctaaacacgtaaactcggtaaactcgccgagttgacacgcgatttgtggaacatt 9192007  T
Q  101 g 101  Q
    |    
T  9192006 g 9192006  T

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Target: chr1; HSP #29
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 8 - 90
Target Start/End: Original strand, 27257904 - 27257986
Alignment:
Q  8 aaatcgagtttacctcagtgttaacacgattttggtacctaaaaacgtaaactcgataaactcggagagttaacactcgattt 90  Q
    ||||| |||||||||| | ||| |||||||||||||||||||||||||||| ||  ||||||||| ||||||||||| |||||    
T  27257904 aaatcaagtttacctcggagttgacacgattttggtacctaaaaacgtaaattcattaaactcggcgagttaacactagattt 27257986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 5 - 102
Target Start/End: Complemental strand, 3593324 - 3593236
Alignment:
Q  5 tagaaatcgagtttacctcagtgttaacacgattttggtacctaaaaacgtaaactcgataaactcggagagttaacactcgatttgcggaacattgt 102  Q
    |||||||||| |||||||| | ||||||||||||||| ||||||||||          ||||||||||||||||||||||||||||||||||||||||    
T  3593324 tagaaatcgaatttacctccgagttaacacgattttgatacctaaaaat---------ataaactcggagagttaacactcgatttgcggaacattgt 3593236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 28 - 101
Target Start/End: Original strand, 49237032 - 49237105
Alignment:
Q  28 ttaacacgattttggtacctaaaaacgtaaactcgataaactcggagagttaacactcgatttgcggaacattg 101  Q
    |||||||| |||||||||||||| || ||||||||||||||||| ||  |||||||||||||| ||||||||||    
T  49237032 ttaacacggttttggtacctaaacacataaactcgataaactcgaagtattaacactcgatttacggaacattg 49237105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 1243345 - 1243445
Alignment:
Q  1 ttactagaaatcgagtttacctcagtgttaacacgattttggtacctaaaaacgtaaactcgataaactcggagagttaacactcgatttgcggaacatt 100  Q
    |||| |||||||||||||||||| | ||||||||| |||| | ||||||| ||||||||| | ||||||||  ||||| |||| ||||||| ||||||||    
T  1243345 ttaccagaaatcgagtttacctccgagttaacacgtttttagcacctaaacacgtaaactaggtaaactcgccgagttgacacgcgatttgtggaacatt 1243444  T
Q  101 g 101  Q
    |    
T  1243445 g 1243445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 18798961 - 18798866
Alignment:
Q  1 ttactagaaatcgagtttacctcagtgttaacacgattttggtacctaaaaacgtaaactcgataaactcggagagttaacactcgatttgcggaacatt 100  Q
    |||| ||||| ||| |||||||||| |||||||||||||| ||||||||||| ||||||||| ||     ||||||||||| |||||| |||||||||||    
T  18798961 ttaccagaaaccgattttacctcagagttaacacgatttttgtacctaaaaatgtaaactcggta-----ggagagttaacgctcgatctgcggaacatt 18798867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 26757697 - 26757597
Alignment:
Q  1 ttactagaaatcgagtttacctcagtgttaacacgattttggtacctaaaaacgtaaactcgataaactcggagagttaacactcgatttgcggaacatt 100  Q
    |||| |||||||||||||||||| | |||||| || |||| | ||||||| ||||||||||| ||||||||  ||||| |||| ||||||| ||||||||    
T  26757697 ttaccagaaatcgagtttacctctgagttaactcgtttttagcacctaaacacgtaaactcggtaaactcgccgagttgacacgcgatttgtggaacatt 26757598  T
Q  101 g 101  Q
    |    
T  26757597 g 26757597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 41353503 - 41353403
Alignment:
Q  1 ttactagaaatcgagtttacctcagtgttaacacgattttggtacctaaaaacgtaaactcgataaactcggagagttaacactcgatttgcggaacatt 100  Q
    |||| |||||||||||||||||| | ||||||||| |||| | ||||||| || |||||||| ||||||||  ||||| |||| ||||||| ||||||||    
T  41353503 ttaccagaaatcgagtttacctccgagttaacacgtttttagcacctaaacacataaactcggtaaactcgccgagttgacacgcgatttgtggaacatt 41353404  T
Q  101 g 101  Q
    |    
T  41353403 g 41353403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 51106974 - 51106874
Alignment:
Q  1 ttactagaaatcgagtttacctcagtgttaacacgattttggtacctaaaaacgtaaactcgataaactcggagagttaacactcgatttgcggaacatt 100  Q
    |||| ||||||||||||| |||| | ||||||||| |||| | ||||||| ||||||||||| ||||||||  ||||| |||| ||||||| ||||||||    
T  51106974 ttaccagaaatcgagttttcctccgagttaacacgtttttagcacctaaacacgtaaactcggtaaactcgccgagttgacacgcgatttgtggaacatt 51106875  T
Q  101 g 101  Q
    |    
T  51106874 g 51106874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 36 - 101
Target Start/End: Original strand, 28387141 - 28387206
Alignment:
Q  36 attttggtacctaaaaacgtaaactcgataaactcggagagttaacactcgatttgcggaacattg 101  Q
    ||||| |||| |||||| ||||||||| ||| |||||||||||||||| |||||||||||||||||    
T  28387141 atttttgtacataaaaatgtaaactcggtaatctcggagagttaacacacgatttgcggaacattg 28387206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 6 - 90
Target Start/End: Complemental strand, 15927376 - 15927292
Alignment:
Q  6 agaaatcgagtttacctcagtgttaacacgattttggtacctaaaaacgtaaactcgataaactcggagagttaacactcgattt 90  Q
    ||||| ||| |||||||||| |||||||| |||||||||| |||| || ||||||||||||||||  ||  ||||||||||||||    
T  15927376 agaaaccgaatttacctcagagttaacacaattttggtacttaaacacttaaactcgataaactcaaagtattaacactcgattt 15927292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 6 - 62
Target Start/End: Complemental strand, 49231511 - 49231455
Alignment:
Q  6 agaaatcgagtttacctcagtgttaacacgattttggtacctaaaaacgtaaactcg 62  Q
    ||||| |||||||||||||| |||||||||||||| |||||||||||| ||||||||    
T  49231511 agaaaccgagtttacctcagagttaacacgatttttgtacctaaaaacataaactcg 49231455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 27 - 92
Target Start/End: Complemental strand, 51902008 - 51901943
Alignment:
Q  27 gttaacacgattttggtacctaaaaacgtaaactcgataaactcggagagttaacactcgatttgc 92  Q
    ||||||||||||| |||| |||||||| |||||| |||| |||| |||| ||||||||||||||||    
T  51902008 gttaacacgatttcggtatctaaaaacataaacttgatagactcagagaattaacactcgatttgc 51901943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 62
Target Start/End: Complemental strand, 7798571 - 7798521
Alignment:
Q  12 cgagtttacctcagtgttaacacgattttggtacctaaaaacgtaaactcg 62  Q
    |||||||||||| | ||||||||| |||||  |||||||||||||||||||    
T  7798571 cgagtttacctccgagttaacacgtttttgccacctaaaaacgtaaactcg 7798521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #42
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 64 - 101
Target Start/End: Original strand, 42304589 - 42304626
Alignment:
Q  64 taaactcggagagttaacactcgatttgcggaacattg 101  Q
    |||||||| ||||||||||||| |||||||||||||||    
T  42304589 taaactcgaagagttaacactcaatttgcggaacattg 42304626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 77; Significance: 7e-36; HSPs: 27)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 8029880 - 8029980
Alignment:
Q  1 ttactagaaatcgagtttacctcagtgttaacacgattttggtacctaaaaacgtaaactcgataaactcggagagttaacactcgatttgcggaacatt 100  Q
    |||| |||||||||||||| ||||| |||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||| |||||||||    
T  8029880 ttaccagaaatcgagtttatctcagagttaacacgattttggtacctaaacacgtaaactcgataaactcgaagagttaacactcgatttacggaacatt 8029979  T
Q  101 g 101  Q
    |    
T  8029980 g 8029980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 9288185 - 9288285
Alignment:
Q  1 ttactagaaatcgagtttacctcagtgttaacacgattttggtacctaaaaacgtaaactcgataaactcggagagttaacactcgatttgcggaacatt 100  Q
    |||| ||||| ||| |||||||||| |||||||||||||| ||||||||||||||||||||| ||| |||| ||||||||||||||||||||||||||||    
T  9288185 ttaccagaaaccgattttacctcagagttaacacgatttttgtacctaaaaacgtaaactcggtaatctcgaagagttaacactcgatttgcggaacatt 9288284  T
Q  101 g 101  Q
    |    
T  9288285 g 9288285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 10295030 - 10295130
Alignment:
Q  1 ttactagaaatcgagtttacctcagtgttaacacgattttggtacctaaaaacgtaaactcgataaactcggagagttaacactcgatttgcggaacatt 100  Q
    |||| ||||| |||||||||||||| |||||||||||| | ||||||||||||||||||||| ||| ||||||||||||||||||||||| |||||||||    
T  10295030 ttaccagaaaccgagtttacctcagagttaacacgattgttgtacctaaaaacgtaaactcggtaatctcggagagttaacactcgatttacggaacatt 10295129  T
Q  101 g 101  Q
    |    
T  10295130 g 10295130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 19717565 - 19717665
Alignment:
Q  1 ttactagaaatcgagtttacctcagtgttaacacgattttggtacctaaaaacgtaaactcgataaactcggagagttaacactcgatttgcggaacatt 100  Q
    |||| ||||| ||| |||||||||| |||||||||||||| ||||||||||| ||||||||| ||| |||||||||||||||||||||||||||||||||    
T  19717565 ttaccagaaaccgattttacctcagagttaacacgatttttgtacctaaaaatgtaaactcggtaatctcggagagttaacactcgatttgcggaacatt 19717664  T
Q  101 g 101  Q
    |    
T  19717665 g 19717665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 31625818 - 31625718
Alignment:
Q  1 ttactagaaatcgagtttacctcagtgttaacacgattttggtacctaaaaacgtaaactcgataaactcggagagttaacactcgatttgcggaacatt 100  Q
    |||| ||||| |||||||||||||| |||||||| ||||| ||||||||||| ||||||||| ||| |||||||||||||||||||||||||||||||||    
T  31625818 ttaccagaaaccgagtttacctcagagttaacacaatttttgtacctaaaaatgtaaactcggtaatctcggagagttaacactcgatttgcggaacatt 31625719  T
Q  101 g 101  Q
    |    
T  31625718 g 31625718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 32498051 - 32497959
Alignment:
Q  1 ttactagaaatcgagtttacctcagtgttaacacgattttggtacctaaaaacgtaaactcgataaactcggagagttaacactcgatttgcg 93  Q
    |||||||||| |||||||||||||| |||||||||||||| ||||||||||||||||||||| ||| |||||||||||||||||| |||||||    
T  32498051 ttactagaaaccgagtttacctcagagttaacacgatttttgtacctaaaaacgtaaactcggtaatctcggagagttaacactcaatttgcg 32497959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 16 - 101
Target Start/End: Original strand, 18958433 - 18958518
Alignment:
Q  16 tttacctcagtgttaacacgattttggtacctaaaaacgtaaactcgataaactcggagagttaacactcgatttgcggaacattg 101  Q
    |||||||||| |||||||||||||| ||||||||||| ||||||||| ||| ||||||||||||||||||||||||||||||||||    
T  18958433 tttacctcagagttaacacgatttttgtacctaaaaatgtaaactcggtaatctcggagagttaacactcgatttgcggaacattg 18958518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 16364216 - 16364116
Alignment:
Q  1 ttactagaaatcgagtttacctcagtgttaacacgattttggtacctaaaaacgtaaactcgataaactcggagagttaacactcgatttgcggaacatt 100  Q
    |||||||||| ||| ||||||| || |||||||||||||| ||||||||||||||||| ||||||| |||  ||||||||||||||||||||||||||||    
T  16364216 ttactagaaaccgaatttaccttagagttaacacgatttttgtacctaaaaacgtaaattcgataatctcatagagttaacactcgatttgcggaacatt 16364117  T
Q  101 g 101  Q
    |    
T  16364116 g 16364116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 18305667 - 18305767
Alignment:
Q  1 ttactagaaatcgagtttacctcagtgttaacacgattttggtacctaaaaacgtaaactcgataaactcggagagttaacactcgatttgcggaacatt 100  Q
    |||| ||||| ||| |||||||||| |||||||||||||| |||||||||||||||| |||| ||| |||||||||||||||||||||||||| ||||||    
T  18305667 ttaccagaaaccgattttacctcagagttaacacgatttttgtacctaaaaacgtaagctcggtaatctcggagagttaacactcgatttgcgtaacatt 18305766  T
Q  101 g 101  Q
    |    
T  18305767 g 18305767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 12522547 - 12522646
Alignment:
Q  1 ttactagaaatcgagtttacctcagtgttaacacgattttggtacctaaaaacgtaaactcgataaactcggagagttaacactcgatttgcggaacatt 100  Q
    |||| ||||| |||||||||||| | |||||||||||||||||||||||||| | |||||   |||||||||||||||||||||||||||||||||||||    
T  12522547 ttaccagaaaccgagtttacctctgagttaacacgattttggtacctaaaaatgcaaacttagtaaactcggagagttaacactcgatttgcggaacatt 12522646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 1 - 98
Target Start/End: Original strand, 43308199 - 43308296
Alignment:
Q  1 ttactagaaatcgagtttacctcagtgttaacacgattttggtacctaaaaacgtaaactcgataaactcggagagttaacactcgatttgcggaaca 98  Q
    |||| ||||| ||| ||||  |||| |||||||||||||||||||||||||||| ||||||||||| |||| ||||||||||||||||||||||||||    
T  43308199 ttaccagaaaccgattttatatcagagttaacacgattttggtacctaaaaacgcaaactcgataatctcgaagagttaacactcgatttgcggaaca 43308296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 13 - 101
Target Start/End: Original strand, 6388177 - 6388265
Alignment:
Q  13 gagtttacctcagtgttaacacgattttggtacctaaaaacgtaaactcgataaactcggagagttaacactcgatttgcggaacattg 101  Q
    ||||||||||| | ||||||||||||||||||||||||||| |||| ||||||||||||| |||||| ||||| |||||||||||||||    
T  6388177 gagtttacctccgagttaacacgattttggtacctaaaaacataaattcgataaactcggcgagttaccactcaatttgcggaacattg 6388265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 14781823 - 14781923
Alignment:
Q  1 ttactagaaatcgagtttacctcagtgttaacacgattttggtacctaaaaacgtaaactcgataaactcggagagttaacactcgatttgcggaacatt 100  Q
    |||| ||||| ||| |||||||||| ||||||||||||||  |||||||||| || |||||||||| |||||||| ||||||||||||||||||||||||    
T  14781823 ttaccagaaaccgattttacctcagagttaacacgatttttatacctaaaaatgtcaactcgataatctcggagatttaacactcgatttgcggaacatt 14781922  T
Q  101 g 101  Q
    |    
T  14781923 g 14781923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 26856615 - 26856515
Alignment:
Q  1 ttactagaaatcgagtttacctcagtgttaacacgattttggtacctaaaaacgtaaactcgataaactcggagagttaacactcgatttgcggaacatt 100  Q
    |||| ||||| |||||||||||||| |||||||||||||| ||||||| |||| |||||||| ||| |||||||||||||||||||||||| | ||||||    
T  26856615 ttaccagaaaccgagtttacctcagagttaacacgatttttgtacctataaacataaactcggtaatctcggagagttaacactcgatttgtgtaacatt 26856516  T
Q  101 g 101  Q
    |    
T  26856515 g 26856515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 39467209 - 39467309
Alignment:
Q  1 ttactagaaatcgagtttacctcagtgttaacacgattttggtacctaaaaacgtaaactcgataaactcggagagttaacactcgatttgcggaacatt 100  Q
    |||| ||||||| | ||||||| || ||||| |||||||| |||||||||||||||||| || ||| |||||||||||||||||||||||||||||||||    
T  39467209 ttaccagaaatcaattttaccttagagttaatacgatttttgtacctaaaaacgtaaacgcggtaatctcggagagttaacactcgatttgcggaacatt 39467308  T
Q  101 g 101  Q
    |    
T  39467309 g 39467309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 42305295 - 42305395
Alignment:
Q  1 ttactagaaatcgagtttacctcagtgttaacacgattttggtacctaaaaacgtaaactcgataaactcggagagttaacactcgatttgcggaacatt 100  Q
    |||| ||||| ||| |||||||||| ||||||||||||||  |||||||||| ||||||||| ||| |||||||||||||||||||||||| ||||||||    
T  42305295 ttaccagaaaccgattttacctcagagttaacacgatttttatacctaaaaaggtaaactcggtaatctcggagagttaacactcgatttgtggaacatt 42305394  T
Q  101 g 101  Q
    |    
T  42305395 g 42305395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 44725482 - 44725582
Alignment:
Q  1 ttactagaaatcgagtttacctcagtgttaacacgattttggtacctaaaaacgtaaactcgataaactcggagagttaacactcgatttgcggaacatt 100  Q
    |||| ||||| ||| |||||||||| |||||||||||||| ||||||||||| |||| |||||||| ||| |||| ||||||||||||||||||||||||    
T  44725482 ttaccagaaaccgattttacctcagagttaacacgatttttgtacctaaaaatgtaatctcgataatctctgagatttaacactcgatttgcggaacatt 44725581  T
Q  101 g 101  Q
    |    
T  44725582 g 44725582  T

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Target: chr8; HSP #18
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 16 - 101
Target Start/End: Original strand, 43166382 - 43166467
Alignment:
Q  16 tttacctcagtgttaacacgattttggtacctaaaaacgtaaactcgataaactcggagagttaacactcgatttgcggaacattg 101  Q
    |||||||||| |||||||||||||| ||||||||||||||||||||| ||| |||| | | |||||||||||||||||||||||||    
T  43166382 tttacctcagagttaacacgatttttgtacctaaaaacgtaaactcggtaatctcgaaaaattaacactcgatttgcggaacattg 43166467  T

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Target: chr8; HSP #19
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 19484276 - 19484176
Alignment:
Q  1 ttactagaaatcgagtttacctcagtgttaacacgattttggtacctaaaaacgtaaactcgataaactcggagagttaacactcgatttgcggaacatt 100  Q
    |||| |||||||||||||||||| | ||||||||| |||| | ||||||| || |||||||| ||||||||  ||||| |||| ||||||| ||||||||    
T  19484276 ttaccagaaatcgagtttacctccgagttaacacgtttttagcacctaaacacataaactcggtaaactcgccgagttgacacgcgatttgtggaacatt 19484177  T
Q  101 g 101  Q
    |    
T  19484176 g 19484176  T

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Target: chr8; HSP #20
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 17234775 - 17234676
Alignment:
Q  1 ttactagaaatcgagtttacctcagtgttaacacgattttggtacctaaaaacgtaaactcgataaactcggagagttaacactcgatttgcggaacatt 100  Q
    |||| |||||||||||||||||| | ||| | | |||||||||||||||||||| ||||| | ||||||| | ||||||||| ||||||||  |||||||    
T  17234775 ttaccagaaatcgagtttacctccgagttgataggattttggtacctaaaaacgcaaacttggtaaactcagcgagttaacattcgatttgttgaacatt 17234676  T

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Target: chr8; HSP #21
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 24082273 - 24082173
Alignment:
Q  1 ttactagaaatcgagtttacctcagtgttaacacgattttggtacctaaaaacgtaaactcgataaactcggagagttaacactcgatttgcggaacatt 100  Q
    |||| ||||| ||| ||||||||||| ||||||| |||||||||||||||| | ||||||   ||||||||  |||||||||||| |||||  |||||||    
T  24082273 ttaccagaaaccgaatttacctcagtattaacacaattttggtacctaaaatcataaacttagtaaactcgtcgagttaacactcaatttgtagaacatt 24082174  T
Q  101 g 101  Q
    |    
T  24082173 g 24082173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 37131326 - 37131388
Alignment:
Q  1 ttactagaaatcgagtttacctcagtgttaacacgattttggtacctaaaaacgtaaactcga 63  Q
    |||| |||| ||||||||||||| | ||| |||||||||||||||||||||| ||||||||||    
T  37131326 ttaccagaagtcgagtttacctccgagttgacacgattttggtacctaaaaatgtaaactcga 37131388  T

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Target: chr8; HSP #23
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 24067167 - 24067106
Alignment:
Q  1 ttactagaaatcgagtttacctcagtgttaacacgattttggtacctaaaaacgtaaactcg 62  Q
    |||| |||||| ||||| ||||| | ||| ||||||||||||||||||||||||||||||||    
T  24067167 ttaccagaaattgagttcacctccgagttgacacgattttggtacctaaaaacgtaaactcg 24067106  T

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Target: chr8; HSP #24
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 6 - 100
Target Start/End: Complemental strand, 7760864 - 7760770
Alignment:
Q  6 agaaatcgagtttacctcagtgttaacacgattttggtacctaaaaacgtaaactcgataaactcggagagttaacactcgatttgcggaacatt 100  Q
    ||||||| | |||||||  | ||| ||||||||||| ||||||||||  |||||||  ||||||||   ||||||||||||||||| ||||||||    
T  7760864 agaaatcaaatttaccttcgagttgacacgattttgatacctaaaaatataaactcagtaaactcgataagttaacactcgatttgtggaacatt 7760770  T

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Target: chr8; HSP #25
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 16 - 73
Target Start/End: Complemental strand, 7466816 - 7466759
Alignment:
Q  16 tttacctcagtgttaacacgattttggtacctaaaaacgtaaactcgataaactcgga 73  Q
    |||||||||| |||||||||||||| |||| ||||||| |||||||| ||| ||||||    
T  7466816 tttacctcagagttaacacgatttttgtacttaaaaacataaactcggtaatctcgga 7466759  T

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Target: chr8; HSP #26
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 27 - 60
Target Start/End: Original strand, 12522487 - 12522520
Alignment:
Q  27 gttaacacgattttggtacctaaaaacgtaaact 60  Q
    ||||||||||||||||||||||||||||||||||    
T  12522487 gttaacacgattttggtacctaaaaacgtaaact 12522520  T

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Target: chr8; HSP #27
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 13 - 60
Target Start/End: Complemental strand, 41394005 - 41393958
Alignment:
Q  13 gagtttacctcagtgttaacacgattttggtacctaaaaacgtaaact 60  Q
    ||||||||||| |  |||||||||||||| ||||||||||||||||||    
T  41394005 gagtttacctccgaattaacacgattttgatacctaaaaacgtaaact 41393958  T

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Target: chr7 (Bit Score: 77; Significance: 7e-36; HSPs: 38)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 37328415 - 37328315
Alignment:
Q  1 ttactagaaatcgagtttacctcagtgttaacacgattttggtacctaaaaacgtaaactcgataaactcggagagttaacactcgatttgcggaacatt 100  Q
    |||| ||||||||||||||||| || |||||||||||||| ||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||    
T  37328415 ttaccagaaatcgagtttaccttagagttaacacgatttttgtacctaaaaacgtaaactcgataatctcggagagtcaacactcgatttgcggaacatt 37328316  T
Q  101 g 101  Q
    |    
T  37328315 g 37328315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 44256452 - 44256552
Alignment:
Q  1 ttactagaaatcgagtttacctcagtgttaacacgattttggtacctaaaaacgtaaactcgataaactcggagagttaacactcgatttgcggaacatt 100  Q
    |||| |||||||||||||||||||| |||||||||||||| ||| ||||||||||||||||||||| ||||||||||||||||||||||||||| |||||    
T  44256452 ttaccagaaatcgagtttacctcagagttaacacgatttttgtatctaaaaacgtaaactcgataatctcggagagttaacactcgatttgcgggacatt 44256551  T
Q  101 g 101  Q
    |    
T  44256552 g 44256552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 12 - 101
Target Start/End: Complemental strand, 12740867 - 12740778
Alignment:
Q  12 cgagtttacctcagtgttaacacgattttggtacctaaaaacgtaaactcgataaactcggagagttaacactcgatttgcggaacattg 101  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||| |||||||    
T  12740867 cgagtttacctcagagttaacacgattttggtacctaaaaacgtaaactcggtaatctcggagagttaacactcgatttgcgtaacattg 12740778  T

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Target: chr7; HSP #4
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 6 - 101
Target Start/End: Complemental strand, 33383177 - 33383082
Alignment:
Q  6 agaaatcgagtttacctcagtgttaacacgattttggtacctaaaaacgtaaactcgataaactcggagagttaacactcgatttgcggaacattg 101  Q
    ||||| |||||||| ||||| |||| ||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||    
T  33383177 agaaaccgagtttatctcagagttaccacgattttggtacctaaaaacgtaaactcggtaatctcggagagttaacactcgatttgcggaacattg 33383082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 510154 - 510054
Alignment:
Q  1 ttactagaaatcgagtttacctcagtgttaacacgattttggtacctaaaaacgtaaactcgataaactcggagagttaacactcgatttgcggaacatt 100  Q
    |||| ||||| ||| |||||||||| |||||||||||||| ||||||||||| ||||||||||||| |||||||| ||||||||||||||||||||||||    
T  510154 ttaccagaaaccgattttacctcagagttaacacgatttttgtacctaaaaatgtaaactcgataatctcggagatttaacactcgatttgcggaacatt 510055  T
Q  101 g 101  Q
    |    
T  510054 g 510054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 8675839 - 8675739
Alignment:
Q  1 ttactagaaatcgagtttacctcagtgttaacacgattttggtacctaaaaacgtaaactcgataaactcggagagttaacactcgatttgcggaacatt 100  Q
    |||| ||||| ||||||||||| || ||||||||||||||||||||||||||||| |||||| ||| |||||||||||||||||||||||||| ||||||    
T  8675839 ttaccagaaaccgagtttaccttagagttaacacgattttggtacctaaaaacgttaactcggtaatctcggagagttaacactcgatttgcgaaacatt 8675740  T
Q  101 g 101  Q
    |    
T  8675739 g 8675739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 18838918 - 18838818
Alignment:
Q  1 ttactagaaatcgagtttacctcagtgttaacacgattttggtacctaaaaacgtaaactcgataaactcggagagttaacactcgatttgcggaacatt 100  Q
    |||| ||||| ||| |||||||||| |||||||||||||| ||||||||||| ||||||||| ||| |||||||||||||||||||||||||||||||||    
T  18838918 ttaccagaaaccgattttacctcagagttaacacgatttttgtacctaaaaatgtaaactcggtaatctcggagagttaacactcgatttgcggaacatt 18838819  T
Q  101 g 101  Q
    |    
T  18838818 g 18838818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 28342819 - 28342719
Alignment:
Q  1 ttactagaaatcgagtttacctcagtgttaacacgattttggtacctaaaaacgtaaactcgataaactcggagagttaacactcgatttgcggaacatt 100  Q
    |||| ||||| ||| |||||||||| |||||||||||||| ||||||||||| ||||||||||||| |||||||| ||||||||||||||||||||||||    
T  28342819 ttaccagaaaccgattttacctcagagttaacacgatttttgtacctaaaaatgtaaactcgataatctcggagatttaacactcgatttgcggaacatt 28342720  T
Q  101 g 101  Q
    |    
T  28342719 g 28342719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 29614492 - 29614592
Alignment:
Q  1 ttactagaaatcgagtttacctcagtgttaacacgattttggtacctaaaaacgtaaactcgataaactcggagagttaacactcgatttgcggaacatt 100  Q
    |||| ||||| ||| |||||||||| |||||||||||||| ||||||||||| ||||||||||||| |||||||| ||||||||||||||||||||||||    
T  29614492 ttaccagaaaccgattttacctcagagttaacacgatttttgtacctaaaaatgtaaactcgataatctcggagatttaacactcgatttgcggaacatt 29614591  T
Q  101 g 101  Q
    |    
T  29614592 g 29614592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 43172215 - 43172115
Alignment:
Q  1 ttactagaaatcgagtttacctcagtgttaacacgattttggtacctaaaaacgtaaactcgataaactcggagagttaacactcgatttgcggaacatt 100  Q
    |||| |||||||||||||||||| | ||||||| ||||||| |||||||||| ||||||||| ||||||| |||||||||||||||||||||||||||||    
T  43172215 ttaccagaaatcgagtttacctccgagttaacatgattttgatacctaaaaatgtaaactcggtaaactcagagagttaacactcgatttgcggaacatt 43172116  T
Q  101 g 101  Q
    |    
T  43172115 g 43172115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 13 - 101
Target Start/End: Complemental strand, 29893468 - 29893380
Alignment:
Q  13 gagtttacctcagtgttaacacgattttggtacctaaaaacgtaaactcgataaactcggagagttaacactcgatttgcggaacattg 101  Q
    ||||||||||||| |||||||||||||| |||| |||||| ||||||||| ||| ||||||||||||||||||||||||||||||||||    
T  29893468 gagtttacctcagagttaacacgatttttgtacttaaaaatgtaaactcggtaatctcggagagttaacactcgatttgcggaacattg 29893380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 13 - 101
Target Start/End: Complemental strand, 32884267 - 32884179
Alignment:
Q  13 gagtttacctcagtgttaacacgattttggtacctaaaaacgtaaactcgataaactcggagagttaacactcgatttgcggaacattg 101  Q
    ||||||||||||| |||||| ||||||| ||||||||||||||||||||| ||| ||||||||||||||||||||||| ||||||||||    
T  32884267 gagtttacctcagagttaactcgatttttgtacctaaaaacgtaaactcggtaatctcggagagttaacactcgatttacggaacattg 32884179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 33891931 - 33892031
Alignment:
Q  1 ttactagaaatcgagtttacctcagtgttaacacgattttggtacctaaaaacgtaaactcgataaactcggagagttaacactcgatttgcggaacatt 100  Q
    |||| ||||| ||| ||||||| || |||||||||||||| ||||||||||||||||||| | ||| |||||||||||||||||||||||||||||||||    
T  33891931 ttaccagaaaccgattttaccttagagttaacacgatttttgtacctaaaaacgtaaacttggtaatctcggagagttaacactcgatttgcggaacatt 33892030  T
Q  101 g 101  Q
    |    
T  33892031 g 33892031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 13 - 101
Target Start/End: Original strand, 37972586 - 37972674
Alignment:
Q  13 gagtttacctcagtgttaacacgattttggtacctaaaaacgtaaactcgataaactcggagagttaacactcgatttgcggaacattg 101  Q
    ||||||| ||||| |||||||||||||||||||||||||||||||||||| ||| ||| || |||||||||||||||||||||||||||    
T  37972586 gagtttatctcagagttaacacgattttggtacctaaaaacgtaaactcggtaatctcagaaagttaacactcgatttgcggaacattg 37972674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 13 - 101
Target Start/End: Complemental strand, 41827824 - 41827736
Alignment:
Q  13 gagtttacctcagtgttaacacgattttggtacctaaaaacgtaaactcgataaactcggagagttaacactcgatttgcggaacattg 101  Q
    ||||||||||||| |||||||||||||| |||||||||||||||||||| |||| ||| |||||||||||||| |||||||||||||||    
T  41827824 gagtttacctcagagttaacacgatttttgtacctaaaaacgtaaactcaataatctcagagagttaacactcaatttgcggaacattg 41827736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 6 - 101
Target Start/End: Complemental strand, 39028590 - 39028495
Alignment:
Q  6 agaaatcgagtttacctcagtgttaacacgattttggtacctaaaaacgtaaactcgataaactcggagagttaacactcgatttgcggaacattg 101  Q
    ||||| ||| |||||||||| ||| |||| ||||| ||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||    
T  39028590 agaaaccgattttacctcagagtttacacaatttttgtacctaaaaacgtaaactcggtaatctcggagagttaacactcgatttgcggaacattg 39028495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 16 - 101
Target Start/End: Complemental strand, 23101784 - 23101699
Alignment:
Q  16 tttacctcagtgttaacacgattttggtacctaaaaacgtaaactcgataaactcggagagttaacactcgatttgcggaacattg 101  Q
    ||||||| || |||||||||||||| ||||||||||| ||||||||||||| |||||||| |||||||||||||||||||||||||    
T  23101784 tttaccttagagttaacacgatttttgtacctaaaaatgtaaactcgataatctcggagatttaacactcgatttgcggaacattg 23101699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 28034545 - 28034645
Alignment:
Q  1 ttactagaaatcgagtttacctcagtgttaacacgattttggtacctaaaaacgtaaactcgataaactcggagagttaacactcgatttgcggaacatt 100  Q
    |||| ||||| ||| ||||| |||| |||||||||||||| |||| |||||||||||||||| ||| ||| |||||||||||||||||||||||||||||    
T  28034545 ttaccagaaaccgattttacatcagagttaacacgatttttgtacataaaaacgtaaactcggtaatctcagagagttaacactcgatttgcggaacatt 28034644  T
Q  101 g 101  Q
    |    
T  28034645 g 28034645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 39784615 - 39784515
Alignment:
Q  1 ttactagaaatcgagtttacctcagtgttaacacgattttggtacctaaaaacgtaaactcgataaactcggagagttaacactcgatttgcggaacatt 100  Q
    |||| ||||| ||| |||||||||| |||||||||||||| ||||||||||| ||||||||||||| |||| ||| |||||||||||||| |||||||||    
T  39784615 ttaccagaaaccgattttacctcagagttaacacgatttttgtacctaaaaatgtaaactcgataatctcgaagatttaacactcgatttacggaacatt 39784516  T
Q  101 g 101  Q
    |    
T  39784515 g 39784515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 40460411 - 40460507
Alignment:
Q  1 ttactagaaatcgagtttacctcagtgttaacacgattttggtacctaaaaacgtaaactcgataaactcggagagttaacactcgatttgcggaac 97  Q
    |||| ||||| ||| |||||||||| |||||||||||||| |||||||||| |||||||||| ||| |||| |||||||||||||||||||||||||    
T  40460411 ttaccagaaaccgattttacctcagagttaacacgatttttgtacctaaaagcgtaaactcggtaatctcgaagagttaacactcgatttgcggaac 40460507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 6 - 101
Target Start/End: Complemental strand, 3023437 - 3023342
Alignment:
Q  6 agaaatcgagtttacctcagtgttaacacgattttggtacctaaaaacgtaaactcgataaactcggagagttaacactcgatttgcggaacattg 101  Q
    ||||| ||| |||||||||  ||||||| |||||| |||||||||||| |||||||||||| |||||||||||||||||||||||||||| |||||    
T  3023437 agaaaccgattttacctcaaagttaacatgatttttgtacctaaaaacataaactcgataatctcggagagttaacactcgatttgcggatcattg 3023342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 7 - 101
Target Start/End: Complemental strand, 29586016 - 29585922
Alignment:
Q  7 gaaatcgagtttacctcagtgttaacacgattttggtacctaaaaacgtaaactcgataaactcggagagttaacactcgatttgcggaacattg 101  Q
    |||| ||| |||||||||| |||||||||||||| ||||||||||||||||||||| ||| ||| |||||||||||||| || ||||||||||||    
T  29586016 gaaaccgactttacctcagagttaacacgatttttgtacctaaaaacgtaaactcggtaatctcagagagttaacactcaatctgcggaacattg 29585922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 7993665 - 7993565
Alignment:
Q  1 ttactagaaatcgagtttacctcagtgttaacacgattttggtacctaaaaacgtaaactcgataaactcggagagttaacactcgatttgcggaacatt 100  Q
    |||| ||||| |||||||||||||  |||||||||||||| |||| ||||||  || ||||| ||| |||||||||||||||||||||||||||||||||    
T  7993665 ttaccagaaaccgagtttacctcatagttaacacgatttttgtacttaaaaatatatactcggtaatctcggagagttaacactcgatttgcggaacatt 7993566  T
Q  101 g 101  Q
    |    
T  7993565 g 7993565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 13 - 101
Target Start/End: Complemental strand, 16709484 - 16709396
Alignment:
Q  13 gagtttacctcagtgttaacacgattttggtacctaaaaacgtaaactcgataaactcggagagttaacactcgatttgcggaacattg 101  Q
    ||||||||||||| |||| ||||||||||||||||||||||||||||||| |||||||  |  ||||||||| ||||||||||||||||    
T  16709484 gagtttacctcagagttaccacgattttggtacctaaaaacgtaaactcggtaaactcataatgttaacacttgatttgcggaacattg 16709396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 13 - 101
Target Start/End: Complemental strand, 17683720 - 17683632
Alignment:
Q  13 gagtttacctcagtgttaacacgattttggtacctaaaaacgtaaactcgataaactcggagagttaacactcgatttgcggaacattg 101  Q
    ||||||||||||| |||| ||||||||||||||||||||||||||||||| |||||||  |  ||||||||| ||||||||||||||||    
T  17683720 gagtttacctcagagttaccacgattttggtacctaaaaacgtaaactcggtaaactcataatgttaacacttgatttgcggaacattg 17683632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 44121630 - 44121730
Alignment:
Q  1 ttactagaaatcgagtttacctcagtgttaacacgattttggtacctaaaaacgtaaactcgataaactcggagagttaacactcgatttgcggaacatt 100  Q
    |||| ||||| ||| |||||||||  |||||||||||||| ||||||||||||||||| ||| ||| ||| ||||||||||||||||||||||||| |||    
T  44121630 ttaccagaaaccgaatttacctcatagttaacacgatttttgtacctaaaaacgtaaattcggtaatctcagagagttaacactcgatttgcggaatatt 44121729  T
Q  101 g 101  Q
    |    
T  44121730 g 44121730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 42610678 - 42610579
Alignment:
Q  1 ttactagaaatcgagtttacctcagtgttaacacgattttggtacctaaaaacgtaaactcgataaactcggagagttaacactcgatttgcggaacatt 100  Q
    |||| ||||| | |||||||||||   ||||||||||||||||||||||| ||||||| ||| ||||||| |||||||||||||| ||||||||||||||    
T  42610678 ttaccagaaaccaagtttacctcaaatttaacacgattttggtacctaaacacgtaaattcggtaaactcagagagttaacactcaatttgcggaacatt 42610579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 7 - 101
Target Start/End: Complemental strand, 27148900 - 27148806
Alignment:
Q  7 gaaatcgagtttacctcagtgttaacacgattttggtacctaaaaacgtaaactcgataaactcggagagttaacactcgatttgcggaacattg 101  Q
    ||||| ||| ||||||| |  |||||||||||||| |||||||||||||||||||||||||||  | |||||||||||||||||| |||||||||    
T  27148900 gaaattgaggttacctccgatttaacacgattttgatacctaaaaacgtaaactcgataaactttgcgagttaacactcgatttgtggaacattg 27148806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 102
Target Start/End: Complemental strand, 14741487 - 14741386
Alignment:
Q  1 ttactagaaatcgagtttacctcagtgttaacacgattttggtacctaaaaacgtaaactcgataaactcggagagttaacactcgatttgcggaacatt 100  Q
    ||||||||||||||||||||||| | ||||||||| |||| | ||||||| ||||||||||| ||||||||  ||||| |||| ||||||| ||||||||    
T  14741487 ttactagaaatcgagtttacctccgagttaacacgtttttagcacctaaacacgtaaactcggtaaactcgccgagttgacacgcgatttgtggaacatt 14741388  T
Q  101 gt 102  Q
    ||    
T  14741387 gt 14741386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 13 - 102
Target Start/End: Original strand, 26201841 - 26201930
Alignment:
Q  13 gagtttacctcagtgttaacacgattttggtacctaaaaacgtaaactcgataaactcggagagttaacactcgatttgcggaacattgt 102  Q
    ||||||||||| | ||| |||||||||||||||||||||| ||||| ||| |||||||||  ||||||||||||||||| ||||||||||    
T  26201841 gagtttacctccgagtttacacgattttggtacctaaaaatgtaaattcggtaaactcggcaagttaacactcgatttgtggaacattgt 26201930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 13 - 62
Target Start/End: Original strand, 48136937 - 48136986
Alignment:
Q  13 gagtttacctcagtgttaacacgattttggtacctaaaaacgtaaactcg 62  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  48136937 gagtttacctcagagttaacacgattttggtacctaaaaacgtaaactcg 48136986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 4639913 - 4640013
Alignment:
Q  1 ttactagaaatcgagtttacctcagtgttaacacgattttggtacctaaaaacgtaaactcgataaactcggagagttaacactcgatttgcggaacatt 100  Q
    |||| |||||| ||||||||||| | ||||||||| |||| | ||||||| ||||||||||| ||||||||  ||||| |||| ||||||| ||||||||    
T  4639913 ttaccagaaatagagtttacctccgagttaacacgtttttagcacctaaacacgtaaactcggtaaactcgccgagttgacacgcgatttgtggaacatt 4640012  T
Q  101 g 101  Q
    |    
T  4640013 g 4640013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 11735229 - 11735289
Alignment:
Q  1 ttactagaaatcgagtttacctcagtgttaacacgattttggtacctaaaaacgtaaactc 61  Q
    |||| |||||||||||||||||| | |||||||||||||||| |||||||| |||||||||    
T  11735229 ttaccagaaatcgagtttacctccgagttaacacgattttgggacctaaaatcgtaaactc 11735289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 27 - 100
Target Start/End: Complemental strand, 21486177 - 21486105
Alignment:
Q  27 gttaacacgattttggtacctaaaaacgtaaactcgataaactcggagagttaacactcgatttgcggaacatt 100  Q
    ||||||||||||||| || ||||||  |||||||||||||||||  ||||||||||||| | ||||||||||||    
T  21486177 gttaacacgattttgatatctaaaagtgtaaactcgataaactcaaagagttaacactc-aattgcggaacatt 21486105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 6 - 64
Target Start/End: Original strand, 33497137 - 33497195
Alignment:
Q  6 agaaatcgagtttacctcagtgttaacacgattttggtacctaaaaacgtaaactcgat 64  Q
    |||||||||||||||||| | ||| ||||||||||| ||| |||||| |||||||||||    
T  33497137 agaaatcgagtttacctccgagttgacacgattttgatacttaaaaatgtaaactcgat 33497195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 30823146 - 30823108
Alignment:
Q  1 ttactagaaatcgagtttacctcagtgttaacacgattt 39  Q
    |||||||||| |||||||||||||| |||||||||||||    
T  30823146 ttactagaaaccgagtttacctcagagttaacacgattt 30823108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 23017053 - 23016953
Alignment:
Q  1 ttactagaaatcgagtttacctcagtgttaacacgattttggtacctaaaaacgtaaactcgataaactcggagagttaacactcgatttgcggaacatt 100  Q
    |||| ||||||||||||||||||   |||||||| |||||| ||  |||||||||||  | | |||||||  |  |||||||||||||||  ||||||||    
T  23017053 ttacgagaaatcgagtttacctccaagttaacacaattttgatatgtaaaaacgtaagtttggtaaactcaaaatgttaacactcgatttatggaacatt 23016954  T
Q  101 g 101  Q
    |    
T  23016953 g 23016953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 73 - 101
Target Start/End: Complemental strand, 47067195 - 47067167
Alignment:
Q  73 agagttaacactcgatttgcggaacattg 101  Q
    |||||||||||||||||||||||||||||    
T  47067195 agagttaacactcgatttgcggaacattg 47067167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 77; Significance: 7e-36; HSPs: 21)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 16438767 - 16438667
Alignment:
Q  1 ttactagaaatcgagtttacctcagtgttaacacgattttggtacctaaaaacgtaaactcgataaactcggagagttaacactcgatttgcggaacatt 100  Q
    |||| |||| |||||||||||||   |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16438767 ttaccagaagtcgagtttacctccaagttaacacgatttttgtacctaaaaacgtaaactcgataaactcggagagttaacactcgatttgcggaacatt 16438668  T
Q  101 g 101  Q
    |    
T  16438667 g 16438667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 7497607 - 7497507
Alignment:
Q  1 ttactagaaatcgagtttacctcagtgttaacacgattttggtacctaaaaacgtaaactcgataaactcggagagttaacactcgatttgcggaacatt 100  Q
    |||| ||||| |||||||||||||| |||||||||||||| ||||||||||||||||||| ||||| ||||||||||||||| |||||||||||||||||    
T  7497607 ttaccagaaaccgagtttacctcagagttaacacgatttttgtacctaaaaacgtaaacttgataatctcggagagttaacattcgatttgcggaacatt 7497508  T
Q  101 g 101  Q
    |    
T  7497507 g 7497507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 14262128 - 14262228
Alignment:
Q  1 ttactagaaatcgagtttacctcagtgttaacacgattttggtacctaaaaacgtaaactcgataaactcggagagttaacactcgatttgcggaacatt 100  Q
    |||| ||||||||| |||||||||| |||||||||||||| ||||||||||| ||||||| ||||| |||||||||||||||||||||||||||||||||    
T  14262128 ttaccagaaatcgattttacctcagagttaacacgatttttgtacctaaaaaagtaaactagataatctcggagagttaacactcgatttgcggaacatt 14262227  T
Q  101 g 101  Q
    |    
T  14262228 g 14262228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 31067941 - 31067841
Alignment:
Q  1 ttactagaaatcgagtttacctcagtgttaacacgattttggtacctaaaaacgtaaactcgataaactcggagagttaacactcgatttgcggaacatt 100  Q
    |||| ||||| ||| |||||||||| |||||||||||||| ||||||||||| ||||||||||||| |||||||| ||||||||||||||||||||||||    
T  31067941 ttaccagaaaccgattttacctcagagttaacacgatttttgtacctaaaaatgtaaactcgataatctcggagatttaacactcgatttgcggaacatt 31067842  T
Q  101 g 101  Q
    |    
T  31067841 g 31067841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 6 - 101
Target Start/End: Original strand, 34758776 - 34758871
Alignment:
Q  6 agaaatcgagtttacctcagtgttaacacgattttggtacctaaaaacgtaaactcgataaactcggagagttaacactcgatttgcggaacattg 101  Q
    ||||| ||| |||||||||| |||||||||||||| ||||||||||||||||||| ||||| |||||||||||||| |||||||||||||||||||    
T  34758776 agaaaccgattttacctcagagttaacacgatttttgtacctaaaaacgtaaacttgataatctcggagagttaacgctcgatttgcggaacattg 34758871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 31975691 - 31975791
Alignment:
Q  1 ttactagaaatcgagtttacctcagtgttaacacgattttggtacctaaaaacgtaaactcgataaactcggagagttaacactcgatttgcggaacatt 100  Q
    |||| |||||||||||||||||||| |||||||||||||||||||||||| || |||||||  ||||||||||||||||||||| ||||||| || ||||    
T  31975691 ttacaagaaatcgagtttacctcagagttaacacgattttggtacctaaacacataaactcagtaaactcggagagttaacacttgatttgccgagcatt 31975790  T
Q  101 g 101  Q
    |    
T  31975791 g 31975791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 2606956 - 2606856
Alignment:
Q  1 ttactagaaatcgagtttacctcagtgttaacacgattttggtacctaaaaacgtaaactcgataaactcggagagttaacactcgatttgcggaacatt 100  Q
    |||| |||||||||||||||||||| ||||| ||||||||||| |||||| ||||||||||  |||||||  |||||||||| |||||||||||||||||    
T  2606956 ttaccagaaatcgagtttacctcagagttaaaacgattttggtgcctaaacacgtaaactcagtaaactcaaagagttaacattcgatttgcggaacatt 2606857  T
Q  101 g 101  Q
    |    
T  2606856 g 2606856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 4200143 - 4200243
Alignment:
Q  1 ttactagaaatcgagtttacctcagtgttaacacgattttggtacctaaaaacgtaaactcgataaactcggagagttaacactcgatttgcggaacatt 100  Q
    |||| ||||| ||| |||||||||| ||||||| |||||| |||| |||||| ||||||||||||| |||||||| ||||||||||||||||||||||||    
T  4200143 ttaccagaaaccgattttacctcagagttaacatgatttttgtacttaaaaatgtaaactcgataatctcggagatttaacactcgatttgcggaacatt 4200242  T
Q  101 g 101  Q
    |    
T  4200243 g 4200243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 31896146 - 31896046
Alignment:
Q  1 ttactagaaatcgagtttacctcagtgttaacacgattttggtacctaaaaacgtaaactcgataaactcggagagttaacactcgatttgcggaacatt 100  Q
    |||| ||||| ||| |||||||||| |||||||||||||| ||||||||||| ||| ||||||||| |||||||| |||||||||||||| |||||||||    
T  31896146 ttaccagaaaccgattttacctcagagttaacacgatttttgtacctaaaaatgtatactcgataatctcggagatttaacactcgatttacggaacatt 31896047  T
Q  101 g 101  Q
    |    
T  31896046 g 31896046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 16 - 101
Target Start/End: Original strand, 30384771 - 30384856
Alignment:
Q  16 tttacctcagtgttaacacgattttggtacctaaaaacgtaaactcgataaactcggagagttaacactcgatttgcggaacattg 101  Q
    ||||||| || |||||||||||||| |||||||||||| |||||||| ||| |||||||||||||||||||||||||||| |||||    
T  30384771 tttaccttagagttaacacgatttttgtacctaaaaacataaactcggtaatctcggagagttaacactcgatttgcggatcattg 30384856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 1463710 - 1463810
Alignment:
Q  1 ttactagaaatcgagtttacctcagtgttaacacgattttggtacctaaaaacgtaaactcgataaactcggagagttaacactcgatttgcggaacatt 100  Q
    |||| |||||||||||||||||| | ||||||||| |||| | ||||||| ||||||||||| ||||||||  ||||| |||| ||||||| ||||||||    
T  1463710 ttaccagaaatcgagtttacctccgagttaacacgtttttagcacctaaacacgtaaactcggtaaactcgccgagttgacacgcgatttgtggaacatt 1463809  T
Q  101 g 101  Q
    |    
T  1463810 g 1463810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 8 - 100
Target Start/End: Complemental strand, 3000294 - 3000202
Alignment:
Q  8 aaatcgagtttacctcagtgttaacacgattttggtacctaaaaacgtaaactcgataaactcggagagttaacactcgatttgcggaacatt 100  Q
    ||||||| |||||| | | |||||||||||||||||||||||| ||||||| ||  ||||||||| ||||||||||| |||||| ||||||||    
T  3000294 aaatcgaatttacccccgagttaacacgattttggtacctaaacacgtaaaatcagtaaactcggcgagttaacacttgatttgtggaacatt 3000202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 6788161 - 6788061
Alignment:
Q  1 ttactagaaatcgagtttacctcagtgttaacacgattttggtacctaaaaacgtaaactcgataaactcggagagttaacactcgatttgcggaacatt 100  Q
    |||| |||||||||||||||||| | ||||||||| |||| | ||||||| ||||||||||| ||||||||  ||||| |||| ||||||| ||||||||    
T  6788161 ttaccagaaatcgagtttacctccgagttaacacgtttttagcacctaaacacgtaaactcggtaaactcgccgagttgacacgcgatttgtggaacatt 6788062  T
Q  101 g 101  Q
    |    
T  6788061 g 6788061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 98
Target Start/End: Original strand, 28900877 - 28900965
Alignment:
Q  1 ttactagaaatcgagtttacctcagtgttaacacgattttggtacctaaaaacgtaaactcgataaactcggagagttaacactcgatttgcggaaca 98  Q
    |||| |||||||||||||||||||| |||||||||||||||||||||||| | |||||         ||||||||||||||||||||||| |||||||    
T  28900877 ttaccagaaatcgagtttacctcagagttaacacgattttggtacctaaacatgtaaa---------ctcggagagttaacactcgatttacggaaca 28900965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 12 - 101
Target Start/End: Original strand, 10113830 - 10113919
Alignment:
Q  12 cgagtttacctcagtgttaacacgattttggtacctaaaaacgtaaactcgataaactcggagagttaacactcgatttgcggaacattg 101  Q
    |||||||||||| | ||||||||| |||| | ||||||| ||||||||||| ||||||||  ||||| |||| ||||||| |||||||||    
T  10113830 cgagtttacctccgagttaacacgtttttaggacctaaacacgtaaactcggtaaactcgccgagttgacacgcgatttgtggaacattg 10113919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 31535099 - 31535161
Alignment:
Q  1 ttactagaaatcgagtttacctcagtgttaacacgattttggtacctaaaaacgtaaactcga 63  Q
    |||| ||||||||||||| |||||| |||||||| |||||| |||||||||| ||||||||||    
T  31535099 ttaccagaaatcgagtttgcctcagagttaacacaattttgatacctaaaaatgtaaactcga 31535161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 35 - 101
Target Start/End: Complemental strand, 34773872 - 34773807
Alignment:
Q  35 gattttggtacctaaaaacgtaaactcgataaactcggagagttaacactcgatttgcggaacattg 101  Q
    |||||| ||||||||||  |||||||| |||| |||||||| |||||||||||||||||||||||||    
T  34773872 gatttttgtacctaaaat-gtaaactcaataatctcggagatttaacactcgatttgcggaacattg 34773807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 8 - 63
Target Start/End: Original strand, 31996294 - 31996349
Alignment:
Q  8 aaatcgagtttacctcagtgttaacacgattttggtacctaaaaacgtaaactcga 63  Q
    |||||||||||||||| | ||||||||| |||||  ||||||||||||||||||||    
T  31996294 aaatcgagtttacctccgagttaacacgtttttgccacctaaaaacgtaaactcga 31996349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 62
Target Start/End: Original strand, 8779631 - 8779681
Alignment:
Q  12 cgagtttacctcagtgttaacacgattttggtacctaaaaacgtaaactcg 62  Q
    |||||||||||| | ||||||||| |||||  |||||||||||||||||||    
T  8779631 cgagtttacctccgagttaacacgtttttgccacctaaaaacgtaaactcg 8779681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 12 - 61
Target Start/End: Complemental strand, 13461423 - 13461374
Alignment:
Q  12 cgagtttacctcagtgttaacacgattttggtacctaaaaacgtaaactc 61  Q
    |||||||||||| | ||| ||||||||||| ||| |||||||||||||||    
T  13461423 cgagtttacctccgagttgacacgattttgatacataaaaacgtaaactc 13461374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 60
Target Start/End: Complemental strand, 21199608 - 21199556
Alignment:
Q  8 aaatcgagtttacctcagtgttaacacgattttggtacctaaaaacgtaaact 60  Q
    |||||||||||||||  | ||||||||| |||||  |||||||||||||||||    
T  21199608 aaatcgagtttaccttggagttaacacggttttgccacctaaaaacgtaaact 21199556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 77; Significance: 7e-36; HSPs: 20)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 13926441 - 13926341
Alignment:
Q  1 ttactagaaatcgagtttacctcagtgttaacacgattttggtacctaaaaacgtaaactcgataaactcggagagttaacactcgatttgcggaacatt 100  Q
    |||| ||||| ||| |||||||||| |||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  13926441 ttaccagaaaccgattttacctcagagttaacacgatttttgtacctaaaaacgtaaactcgataatctcggagagttaacactcgatttgcggaacatt 13926342  T
Q  101 g 101  Q
    |    
T  13926341 g 13926341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 8 - 101
Target Start/End: Complemental strand, 39852873 - 39852780
Alignment:
Q  8 aaatcgagtttacctcagtgttaacacgattttggtacctaaaaacgtaaactcgataaactcggagagttaacactcgatttgcggaacattg 101  Q
    ||||||| |||||||||| |||||||||||||| ||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||    
T  39852873 aaatcgattttacctcagagttaacacgatttttgtacctaaaaatgtaaactcgataatctcggagagttaacactcgatttgcggaacattg 39852780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 6 - 101
Target Start/End: Original strand, 5651232 - 5651327
Alignment:
Q  6 agaaatcgagtttacctcagtgttaacacgattttggtacctaaaaacgtaaactcgataaactcggagagttaacactcgatttgcggaacattg 101  Q
    |||||||||||||||||| | |||||||||||||||||||||||| ||||||| |||||||||||| || ||||||||||||||||||||||||||    
T  5651232 agaaatcgagtttacctccgagttaacacgattttggtacctaaacacgtaaaatcgataaactcgaagtgttaacactcgatttgcggaacattg 5651327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 4549950 - 4550050
Alignment:
Q  1 ttactagaaatcgagtttacctcagtgttaacacgattttggtacctaaaaacgtaaactcgataaactcggagagttaacactcgatttgcggaacatt 100  Q
    |||| ||||| ||| |||||||||| |||||||||||||| ||||||||| ||||||||||| ||| |||||||||||||||||||||||||||||||||    
T  4549950 ttaccagaaaccgattttacctcagagttaacacgatttttgtacctaaacacgtaaactcggtaatctcggagagttaacactcgatttgcggaacatt 4550049  T
Q  101 g 101  Q
    |    
T  4550050 g 4550050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 5949621 - 5949522
Alignment:
Q  1 ttactagaaatcgagtttacctcagtgttaacacgattttggtacctaaaaacgtaaactcgataaactcggagagttaacactcgatttgcggaacatt 100  Q
    |||| ||||| ||| |||||||||| |||||||||||||| ||||||||||||||||||| ||||| ||||||||||||| |||||||||||||||||||    
T  5949621 ttaccagaaaccgattttacctcagagttaacacgatttttgtacctaaaaacgtaaact-gataatctcggagagttaatactcgatttgcggaacatt 5949523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 37014364 - 37014264
Alignment:
Q  1 ttactagaaatcgagtttacctcagtgttaacacgattttggtacctaaaaacgtaaactcgataaactcggagagttaacactcgatttgcggaacatt 100  Q
    |||| ||||| ||| |||||||||| |||||||||||||| ||||||||||| ||||||||| ||| |||||||||||||||||||||||||| ||||||    
T  37014364 ttaccagaaaccgattttacctcagagttaacacgatttttgtacctaaaaatgtaaactcggtaatctcggagagttaacactcgatttgcgaaacatt 37014265  T
Q  101 g 101  Q
    |    
T  37014264 g 37014264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 1460838 - 1460938
Alignment:
Q  1 ttactagaaatcgagtttacctcagtgttaacacgattttggtacctaaaaacgtaaactcgataaactcggagagttaacactcgatttgcggaacatt 100  Q
    |||| ||||| |||||||||||| | |||||||| ||||| ||||||||||||||||||||| ||| |||  ||||||||||||||||||||||||||||    
T  1460838 ttaccagaaaccgagtttacctctgagttaacacaatttttgtacctaaaaacgtaaactcggtaatctcaaagagttaacactcgatttgcggaacatt 1460937  T
Q  101 g 101  Q
    |    
T  1460938 g 1460938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 13 - 101
Target Start/End: Original strand, 4240170 - 4240258
Alignment:
Q  13 gagtttacctcagtgttaacacgattttggtacctaaaaacgtaaactcgataaactcggagagttaacactcgatttgcggaacattg 101  Q
    ||||||||||||| |||||||||||||| | ||||||||||||||||||| ||| ||| |||||||||||||| |||||||||||||||    
T  4240170 gagtttacctcagagttaacacgatttttgcacctaaaaacgtaaactcggtaatctcagagagttaacactcaatttgcggaacattg 4240258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 16548885 - 16548985
Alignment:
Q  1 ttactagaaatcgagtttacctcagtgttaacacgattttggtacctaaaaacgtaaactcgataaactcggagagttaacactcgatttgcggaacatt 100  Q
    |||| |||||| ||||||||||| | ||| ||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||  ||||||||    
T  16548885 ttaccagaaattgagtttacctccgagttgacacgattttggtacctaaaaacgtaaactcgataaactcaatgagttaacactcgatttatggaacatt 16548984  T
Q  101 g 101  Q
    |    
T  16548985 g 16548985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 40013397 - 40013496
Alignment:
Q  1 ttactagaaatcgagtttacctcagtgttaacacgattttggtacctaaaaacgtaaactcgataaactcggagagttaacactcgatttgcggaacatt 100  Q
    |||| ||||| ||| |||||||||| ||||||||||||||  ||| |||||| ||||||||| ||| |||||||||||||||||||||||||||||||||    
T  40013397 ttaccagaaaccgattttacctcagagttaacacgatttttatacttaaaaatgtaaactcggtaatctcggagagttaacactcgatttgcggaacatt 40013496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 29716831 - 29716920
Alignment:
Q  1 ttactagaaatcgagtttacctcagtgttaacacgattttggtacctaaaaacgtaaactcgataaactcggagagttaacactcgattt 90  Q
    |||| ||||||| |||||||||  | ||||||||||||||| |||||||||||||||||||  |||||| ||||||||||||||||||||    
T  29716831 ttaccagaaatcaagtttaccttcgagttaacacgattttgatacctaaaaacgtaaactccgtaaacttggagagttaacactcgattt 29716920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 13999786 - 13999886
Alignment:
Q  1 ttactagaaatcgagtttacctcagtgttaacacgattttggtacctaaaaacgtaaactcgataaactcggagagttaacactcgatttgcggaacatt 100  Q
    |||| ||||| ||| |||| ||||  |||||||||||||| ||||||||||| || ||||| |||| |||||||| ||||||||||||||||||||||||    
T  13999786 ttaccagaaaccgattttatctcaaagttaacacgatttttgtacctaaaaatgtcaactccataatctcggagatttaacactcgatttgcggaacatt 13999885  T
Q  101 g 101  Q
    |    
T  13999886 g 13999886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 7125205 - 7125305
Alignment:
Q  1 ttactagaaatcgagtttacctcagtgttaacacgattttggtacctaaaaacgtaaactcgataaactcggagagttaacactcgatttgcggaacatt 100  Q
    |||| |||||||||||||||||| | ||||||||| |||| | ||||||| ||||||||||| ||||||||  ||||| |||| ||||||| ||||||||    
T  7125205 ttaccagaaatcgagtttacctccgagttaacacgtttttagcacctaaacacgtaaactcggtaaactcgccgagttgacacgcgatttgtggaacatt 7125304  T
Q  101 g 101  Q
    |    
T  7125305 g 7125305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 28623207 - 28623307
Alignment:
Q  1 ttactagaaatcgagtttacctcagtgttaacacgattttggtacctaaaaacgtaaactcgataaactcggagagttaacactcgatttgcggaacatt 100  Q
    |||| |||||||||||||| ||| | ||||||||| |||| | ||||||| ||||||||||||||||||||  ||||| |||| ||||||| ||||||||    
T  28623207 ttaccagaaatcgagtttatctccgagttaacacgtttttagcacctaaacacgtaaactcgataaactcgctgagttgacacgcgatttgtggaacatt 28623306  T
Q  101 g 101  Q
    |    
T  28623307 g 28623307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 102
Target Start/End: Complemental strand, 29758767 - 29758666
Alignment:
Q  1 ttactagaaatcgagtttacctcagtgttaacacgattttggtacctaaaaacgtaaactcgataaactcggagagttaacactcgatttgcggaacatt 100  Q
    |||| ||||||| | | |||||| | ||||||||||||||| |||||||||||||||||||||||||||    |||||||||||| |||| ||||| |||    
T  29758767 ttaccagaaatcaaatctacctccgagttaacacgattttgatacctaaaaacgtaaactcgataaacttaacgagttaacactcaatttacggaatatt 29758668  T
Q  101 gt 102  Q
    ||    
T  29758667 gt 29758666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 28 - 101
Target Start/End: Complemental strand, 34218503 - 34218430
Alignment:
Q  28 ttaacacgattttggtacctaaaaacgtaaactcgataaactcggagagttaacactcgatttgcggaacattg 101  Q
    ||||||||||||||||| ||||||||||||||| | ||||||| ||| |||||||||| |||||||||| ||||    
T  34218503 ttaacacgattttggtatctaaaaacgtaaacttggtaaactcagagtgttaacactcaatttgcggaatattg 34218430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 31 - 100
Target Start/End: Complemental strand, 21489931 - 21489862
Alignment:
Q  31 acacgattttggtacctaaaaacgtaaactcgataaactcggagagttaacactcgatttgcggaacatt 100  Q
    |||||||||||||||||||||| ||||| || ||||||| | | ||||||||||||||||| ||||||||    
T  21489931 acacgattttggtacctaaaaatgtaaaatcaataaacttgaaaagttaacactcgatttgtggaacatt 21489862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 31 - 99
Target Start/End: Original strand, 15672751 - 15672819
Alignment:
Q  31 acacgattttggtacctaaaaacgtaaactcgataaactcggagagttaacactcgatttgcggaacat 99  Q
    |||||||||| |||||||||||| |||||||  ||||||||| ||||||||||| |||||| |||||||    
T  15672751 acacgattttagtacctaaaaacataaactcagtaaactcggcgagttaacacttgatttgtggaacat 15672819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 8 - 62
Target Start/End: Original strand, 2675121 - 2675175
Alignment:
Q  8 aaatcgagtttacctcagtgttaacacgattttggtacctaaaaacgtaaactcg 62  Q
    |||||||||||||||| | ||||||||| |||||  |||||||||||||||||||    
T  2675121 aaatcgagtttacctccgagttaacacgtttttgccacctaaaaacgtaaactcg 2675175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 8 - 63
Target Start/End: Original strand, 33892889 - 33892944
Alignment:
Q  8 aaatcgagtttacctcagtgttaacacgattttggtacctaaaaacgtaaactcga 63  Q
    |||||||||||||||| | ||||||||| |||||  ||||||||||||||| ||||    
T  33892889 aaatcgagtttacctccgagttaacacgtttttgccacctaaaaacgtaaattcga 33892944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 77; Significance: 7e-36; HSPs: 36)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 48379658 - 48379558
Alignment:
Q  1 ttactagaaatcgagtttacctcagtgttaacacgattttggtacctaaaaacgtaaactcgataaactcggagagttaacactcgatttgcggaacatt 100  Q
    |||| ||||||||||||||||||||  ||||||||||||| ||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||    
T  48379658 ttaccagaaatcgagtttacctcagaattaacacgatttttgtacctaaaaacgtaaactcggtaatctcggagagttaacactcgatttgcggaacatt 48379559  T
Q  101 g 101  Q
    |    
T  48379558 g 48379558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 51737379 - 51737479
Alignment:
Q  1 ttactagaaatcgagtttacctcagtgttaacacgattttggtacctaaaaacgtaaactcgataaactcggagagttaacactcgatttgcggaacatt 100  Q
    |||||||||| |||||||||||||| |||||||||||||| ||||||||||| ||||||||||||| ||| |||||||||||||||||||||||||||||    
T  51737379 ttactagaaaccgagtttacctcagagttaacacgatttttgtacctaaaaatgtaaactcgataatctcagagagttaacactcgatttgcggaacatt 51737478  T
Q  101 g 101  Q
    |    
T  51737479 g 51737479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 52617664 - 52617764
Alignment:
Q  1 ttactagaaatcgagtttacctcagtgttaacacgattttggtacctaaaaacgtaaactcgataaactcggagagttaacactcgatttgcggaacatt 100  Q
    |||| ||||| |||||||||||||| |||||||||||||| ||||||||||||||||| ||||||| ||| |||||||||||||||||||||||||||||    
T  52617664 ttaccagaaaccgagtttacctcagagttaacacgatttttgtacctaaaaacgtaaattcgataatctcagagagttaacactcgatttgcggaacatt 52617763  T
Q  101 g 101  Q
    |    
T  52617764 g 52617764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 6 - 101
Target Start/End: Complemental strand, 26107832 - 26107737
Alignment:
Q  6 agaaatcgagtttacctcagtgttaacacgattttggtacctaaaaacgtaaactcgataaactcggagagttaacactcgatttgcggaacattg 101  Q
    |||||||||||||||||||| ||||||| |||||| ||||||||||||||||||||| ||| |||||||||||| |||||||||||||||||||||    
T  26107832 agaaatcgagtttacctcagagttaacatgatttttgtacctaaaaacgtaaactcgttaatctcggagagttatcactcgatttgcggaacattg 26107737  T

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Target: chr3; HSP #5
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 6 - 101
Target Start/End: Complemental strand, 54629354 - 54629259
Alignment:
Q  6 agaaatcgagtttacctcagtgttaacacgattttggtacctaaaaacgtaaactcgataaactcggagagttaacactcgatttgcggaacattg 101  Q
    |||||||||||||||||||| |||||||||||||| ||||||||||||||||||||| ||| ||| |||||||||||||| |||||||||||||||    
T  54629354 agaaatcgagtttacctcagagttaacacgatttttgtacctaaaaacgtaaactcggtaatctcagagagttaacactcaatttgcggaacattg 54629259  T

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Target: chr3; HSP #6
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 17946736 - 17946638
Alignment:
Q  1 ttactagaaatcgagtttacctcagtgttaacacgattttggtacctaaaaacgtaaactcgataaactcggagagttaacactcgatttgcggaacat 99  Q
    |||| ||||| |||||||||||||| ||||||| |||||| ||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||    
T  17946736 ttaccagaaaccgagtttacctcagagttaacatgatttttgtacctaaaaacgtaaactcgataatctcggagaattaacactcgatttgcggaacat 17946638  T

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Target: chr3; HSP #7
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 12 - 101
Target Start/End: Complemental strand, 52810855 - 52810766
Alignment:
Q  12 cgagtttacctcagtgttaacacgattttggtacctaaaaacgtaaactcgataaactcggagagttaacactcgatttgcggaacattg 101  Q
    |||||||||||||| |||||||| ||||| ||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||    
T  52810855 cgagtttacctcagagttaacacaatttttgtacctaaaaacgtaaactcggtaatctcggagagttaacactcgatttgcggaacattg 52810766  T

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Target: chr3; HSP #8
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 21386524 - 21386624
Alignment:
Q  1 ttactagaaatcgagtttacctcagtgttaacacgattttggtacctaaaaacgtaaactcgataaactcggagagttaacactcgatttgcggaacatt 100  Q
    |||| ||||||||||||||||||   ||||||||||||||| |||||||||| ||||||||| |||||||||||||||||||||||||||| ||||||||    
T  21386524 ttaccagaaatcgagtttacctctaagttaacacgattttgatacctaaaaatgtaaactcggtaaactcggagagttaacactcgatttggggaacatt 21386623  T
Q  101 g 101  Q
    |    
T  21386624 g 21386624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 37455355 - 37455255
Alignment:
Q  1 ttactagaaatcgagtttacctcagtgttaacacgattttggtacctaaaaacgtaaactcgataaactcggagagttaacactcgatttgcggaacatt 100  Q
    |||| ||||| ||| |||||||||| |||||||||||||| |||||||||||||||| |||| ||| |||||||||||||||||||||||||||||||||    
T  37455355 ttaccagaaaccgattttacctcagagttaacacgatttttgtacctaaaaacgtaagctcggtaatctcggagagttaacactcgatttgcggaacatt 37455256  T
Q  101 g 101  Q
    |    
T  37455255 g 37455255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 13 - 96
Target Start/End: Complemental strand, 20833393 - 20833310
Alignment:
Q  13 gagtttacctcagtgttaacacgattttggtacctaaaaacgtaaactcgataaactcggagagttaacactcgatttgcggaa 96  Q
    ||||||||||||| |||||||||||||| ||||||||||||||||||||||||| ||| |||||||||||||||||||||||||    
T  20833393 gagtttacctcagagttaacacgatttttgtacctaaaaacgtaaactcgataatctcagagagttaacactcgatttgcggaa 20833310  T

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Target: chr3; HSP #11
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 6 - 101
Target Start/End: Original strand, 50761797 - 50761892
Alignment:
Q  6 agaaatcgagtttacctcagtgttaacacgattttggtacctaaaaacgtaaactcgataaactcggagagttaacactcgatttgcggaacattg 101  Q
    ||||||| | |||||||||| |||||||||||||| ||||||||||||||||||||| ||| ||||||||||||||||||||||||| ||||||||    
T  50761797 agaaatctattttacctcagagttaacacgatttttgtacctaaaaacgtaaactcggtaatctcggagagttaacactcgatttgctgaacattg 50761892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 4962771 - 4962871
Alignment:
Q  1 ttactagaaatcgagtttacctcagtgttaacacgattttggtacctaaaaacgtaaactcgataaactcggagagttaacactcgatttgcggaacatt 100  Q
    ||||| |||||||||||||||||   ||||||||||||||| |||||||||||||||||||||||||||  |||||||||| ||| ||||||||||||||    
T  4962771 ttacttgaaatcgagtttacctccaagttaacacgattttgatacctaaaaacgtaaactcgataaacttagagagttaacgctcaatttgcggaacatt 4962870  T
Q  101 g 101  Q
    |    
T  4962871 g 4962871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 12 - 100
Target Start/End: Original strand, 7437622 - 7437710
Alignment:
Q  12 cgagtttacctcagtgttaacacgattttggtacctaaaaacgtaaactcgataaactcggagagttaacactcgatttgcggaacatt 100  Q
    |||||||| ||| |||||||||||||||||||||||||| | ||||||||  |||||||||||||||||||||||||||||||||||||    
T  7437622 cgagtttatctccgtgttaacacgattttggtacctaaacaagtaaactcagtaaactcggagagttaacactcgatttgcggaacatt 7437710  T

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Target: chr3; HSP #14
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 31645953 - 31646053
Alignment:
Q  1 ttactagaaatcgagtttacctcagtgttaacacgattttggtacctaaaaacgtaaactcgataaactcggagagttaacactcgatttgcggaacatt 100  Q
    |||| ||||| ||| |||||||||| |||||||||||||| |||||||||||||||| |||| ||| |||||||||||||||||||||||||| ||||||    
T  31645953 ttaccagaaaccgattttacctcagagttaacacgatttttgtacctaaaaacgtaagctcggtaatctcggagagttaacactcgatttgcgaaacatt 31646052  T
Q  101 g 101  Q
    |    
T  31646053 g 31646053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 39038598 - 39038498
Alignment:
Q  1 ttactagaaatcgagtttacctcagtgttaacacgattttggtacctaaaaacgtaaactcgataaactcggagagttaacactcgatttgcggaacatt 100  Q
    |||| ||||| |||||||||||||| |||||||| ||||| ||||||||||||||||| ||||||| ||| |||||||||||||||||||| ||||||||    
T  39038598 ttaccagaaaccgagtttacctcagagttaacaccatttttgtacctaaaaacgtaaattcgataatctcagagagttaacactcgatttgtggaacatt 39038499  T
Q  101 g 101  Q
    |    
T  39038498 g 39038498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 44905547 - 44905647
Alignment:
Q  1 ttactagaaatcgagtttacctcagtgttaacacgattttggtacctaaaaacgtaaactcgataaactcggagagttaacactcgatttgcggaacatt 100  Q
    |||| ||||| |||| |||||||||  ||||||||||||| |||||||| |||||||||||| ||| |||||||||||||||||||||||||||||||||    
T  44905547 ttaccagaaaccgagattacctcagaattaacacgatttttgtacctaagaacgtaaactcggtaatctcggagagttaacactcgatttgcggaacatt 44905646  T
Q  101 g 101  Q
    |    
T  44905647 g 44905647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 50903001 - 50903101
Alignment:
Q  1 ttactagaaatcgagtttacctcagtgttaacacgattttggtacctaaaaacgtaaactcgataaactcggagagttaacactcgatttgcggaacatt 100  Q
    |||| ||||| |||||||||||||| |||||||||||||| |||| |||||||||||||||||||  |||||||||||||||||||| ||||| ||||||    
T  50903001 ttaccagaaaccgagtttacctcagagttaacacgatttttgtacataaaaacgtaaactcgatattctcggagagttaacactcgacttgcgaaacatt 50903100  T
Q  101 g 101  Q
    |    
T  50903101 g 50903101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 8 - 101
Target Start/End: Complemental strand, 7665645 - 7665552
Alignment:
Q  8 aaatcgagtttacctcagtgttaacacgattttggtacctaaaaacgtaaactcgataaactcggagagttaacactcgatttgcggaacattg 101  Q
    |||||||||||||||| | |||||||||||||||||| ||||||||||||||| | |||| |||| |||||||||||||||||| |||||||||    
T  7665645 aaatcgagtttacctccgagttaacacgattttggtagctaaaaacgtaaactaggtaaattcggcgagttaacactcgatttgtggaacattg 7665552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 16 - 101
Target Start/End: Original strand, 23753096 - 23753181
Alignment:
Q  16 tttacctcagtgttaacacgattttggtacctaaaaacgtaaactcgataaactcggagagttaacactcgatttgcggaacattg 101  Q
    |||||||||| |||||||||||||| ||||||||||| ||||||||| ||| |||||||||||||||||||||||||| |||||||    
T  23753096 tttacctcagagttaacacgatttttgtacctaaaaatgtaaactcggtaatctcggagagttaacactcgatttgcgaaacattg 23753181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 18750151 - 18750051
Alignment:
Q  1 ttactagaaatcgagtttacctcagtgttaacacgattttggtacctaaaaacgtaaactcgataaactcggagagttaacactcgatttgcggaacatt 100  Q
    |||| ||||| |||||||||||||| ||||||| |||||| ||||||||||||||||||||  |||  || |||||||||||||||||||||||||||||    
T  18750151 ttaccagaaaccgagtttacctcagagttaacatgatttttgtacctaaaaacgtaaactcagtaatatcagagagttaacactcgatttgcggaacatt 18750052  T
Q  101 g 101  Q
    |    
T  18750051 g 18750051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 6 - 101
Target Start/End: Complemental strand, 40897634 - 40897539
Alignment:
Q  6 agaaatcgagtttacctcagtgttaacacgattttggtacctaaaaacgtaaactcgataaactcggagagttaacactcgatttgcggaacattg 101  Q
    ||||| ||| |||||||||| |||||||||||||| |||||||||| |||||| ||| ||| ||||||||||||||||||||| ||||||||||||    
T  40897634 agaaaccgattttacctcagagttaacacgatttttgtacctaaaatcgtaaattcggtaatctcggagagttaacactcgatctgcggaacattg 40897539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 43172988 - 43172889
Alignment:
Q  1 ttactagaaatcgagtttacctcagtgttaacacgattttggtacctaaaaacgtaaactcgataaactcggagagttaacactcgatttgcggaacatt 100  Q
    |||| |||||||||||||||||| | || ||||||||||||||||||||| || |||||||||||||||   |||||||||| |||||||||||||||||    
T  43172988 ttaccagaaatcgagtttacctccgagtcaacacgattttggtacctaaacacataaactcgataaacttaaagagttaacattcgatttgcggaacatt 43172889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 36673844 - 36673944
Alignment:
Q  1 ttactagaaatcgagtttacctcagtgttaacacgattttggtacctaaaaacgtaaactcgataaactcggagagttaacactcgatttgcggaacatt 100  Q
    |||| ||||| ||| |||||||||| |||||||||||||| |||| |||||| || |||||||||| |||||||| |||||||||||||||| |||||||    
T  36673844 ttaccagaaaccgattttacctcagagttaacacgatttttgtacttaaaaatgtcaactcgataatctcggagatttaacactcgatttgcagaacatt 36673943  T
Q  101 g 101  Q
    |    
T  36673944 g 36673944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 22 - 101
Target Start/End: Complemental strand, 45863310 - 45863231
Alignment:
Q  22 tcagtgttaacacgattttggtacctaaaaacgtaaactcgataaactcggagagttaacactcgatttgcggaacattg 101  Q
    |||| |||||||||||||| ||||||||||||||||||||  ||| ||| ||||||||||||||||||||||||||||||    
T  45863310 tcagagttaacacgatttttgtacctaaaaacgtaaactctttaatctcagagagttaacactcgatttgcggaacattg 45863231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 92
Target Start/End: Complemental strand, 33693317 - 33693226
Alignment:
Q  1 ttactagaaatcgagtttacctcagtgttaacacgattttggtacctaaaaacgtaaactcgataaactcggagagttaacactcgatttgc 92  Q
    |||| ||||||||||||||||||   ||||||||||||||||||  ||||| | |||||||| ||||||||||||||||||| |||||||||    
T  33693317 ttaccagaaatcgagtttacctccaagttaacacgattttggtatgtaaaatcataaactcggtaaactcggagagttaacattcgatttgc 33693226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 25049932 - 25049871
Alignment:
Q  1 ttactagaaatcgagtttacctcagtgttaacacgattttggtacctaaaaacgtaaactcg 62  Q
    ||||||||||||||||||||||| | ||| ||||||||||||||||||||||||||||||||    
T  25049932 ttactagaaatcgagtttacctccgagttgacacgattttggtacctaaaaacgtaaactcg 25049871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 8598720 - 8598620
Alignment:
Q  1 ttactagaaatcgagtttacctcagtgttaacacgattttggtacctaaaaacgtaaactcgataaactcggagagttaacactcgatttgcggaacatt 100  Q
    |||| |||||||||||||||||| | ||||||||| |||| | ||||||| ||||||||||| ||||||||  ||||| |||| ||||||| ||||||||    
T  8598720 ttaccagaaatcgagtttacctccgagttaacacgtttttagcacctaaacacgtaaactcggtaaactcgccgagttgacacgcgatttgtggaacatt 8598621  T
Q  101 g 101  Q
    |    
T  8598620 g 8598620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 49296177 - 49296077
Alignment:
Q  1 ttactagaaatcgagtttacctcagtgttaacacgattttggtacctaaaaacgtaaactcgataaactcggagagttaacactcgatttgcggaacatt 100  Q
    |||| |||||||||||||||||| | ||||||||| |||| | ||||||| ||||||||||| ||||||||  ||||| |||| ||||||| ||||||||    
T  49296177 ttaccagaaatcgagtttacctccgagttaacacgtttttagcacctaaacacgtaaactcggtaaactcgccgagttgacacgcgatttgtggaacatt 49296078  T
Q  101 g 101  Q
    |    
T  49296077 g 49296077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 14 - 101
Target Start/End: Complemental strand, 42736355 - 42736268
Alignment:
Q  14 agtttacctcagtgttaacacgattttggtacctaaaaacgtaaactcgataaactcggagagttaacactcgatttgcggaacattg 101  Q
    |||||| |||| ||||||||||||||||||| ||||||||| ||||||||||||||||   | |||||||| ||||| ||||||||||    
T  42736355 agtttatctcaatgttaacacgattttggtatctaaaaacgcaaactcgataaactcgacaaattaacacttgatttacggaacattg 42736268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 21718453 - 21718552
Alignment:
Q  1 ttactagaaatcgagtttacctcagtgttaacacgattttggtacctaaaaacgtaaactcgataaactcggagagttaacactcgatttgcggaacatt 100  Q
    ||||||||||||||||||| ||  | ||| |||||||||||||| || |||||||||||||  |||| |||  |||||||||||||||||  ||||||||    
T  21718453 ttactagaaatcgagtttatctttgagttgacacgattttggtatcttaaaacgtaaactcagtaaaatcgacgagttaacactcgatttttggaacatt 21718552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 12 - 58
Target Start/End: Complemental strand, 16155214 - 16155168
Alignment:
Q  12 cgagtttacctcagtgttaacacgattttggtacctaaaaacgtaaa 58  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||    
T  16155214 cgagtttacctcagagttaacacgattttggtacctaaaaacgtaaa 16155168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 49458419 - 49458357
Alignment:
Q  1 ttactagaaatcgagtttacctcagtgttaacacgattttggtacctaaaaacgtaaactcga 63  Q
    |||| ||||||||||||||| |||| |||||||| |||||| |||||||| ||||||||||||    
T  49458419 ttaccagaaatcgagtttacttcagagttaacacaattttgatacctaaacacgtaaactcga 49458357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 102
Target Start/End: Complemental strand, 53836023 - 53835922
Alignment:
Q  1 ttactagaaatcgagtttacctcagtgttaacacgattttggtacctaaaaacgtaaactcgataaactcggagagttaacactcgatttgcggaacatt 100  Q
    |||| ||||||| ||||||||||   ||||||||| |||| | ||||||| ||||||||||| ||||||||  || || |||| ||||||| ||||||||    
T  53836023 ttaccagaaatcaagtttacctccaagttaacacgtttttagcacctaaacacgtaaactcggtaaactcgccgaattgacacgcgatttgtggaacatt 53835924  T
Q  101 gt 102  Q
    ||    
T  53835923 gt 53835922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 45602457 - 45602545
Alignment:
Q  1 ttactagaaatcgagtttacctcagtgttaacacgattttggtacctaaaaacgtaaactcgataaactcggagagttaacactcgatt 89  Q
    |||| |||||| ||||||||||  | ||| |||| |||||  |||| ||||||||||| ||| ||||||||| ||||||||||||||||    
T  45602457 ttaccagaaattgagtttacctacgagttgacacaattttaatacccaaaaacgtaaattcggtaaactcggcgagttaacactcgatt 45602545  T

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Target: chr3; HSP #35
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 8 - 62
Target Start/End: Original strand, 9818611 - 9818665
Alignment:
Q  8 aaatcgagtttacctcagtgttaacacgattttggtacctaaaaacgtaaactcg 62  Q
    |||||||||||||||| | ||||||||| |||||  |||||||||||||||||||    
T  9818611 aaatcgagtttacctccgagttaacacgtttttgccacctaaaaacgtaaactcg 9818665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 22489524 - 22489585
Alignment:
Q  1 ttactagaaatcgagtttacctcagtgttaacacgattttggtacctaaaaacgtaaactcg 62  Q
    |||| ||||||||||||||| || |  |||||||| |||||| ||||||| |||||||||||    
T  22489524 ttaccagaaatcgagtttacatctgatttaacacgtttttggcacctaaacacgtaaactcg 22489585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 73; Significance: 2e-33; HSPs: 32)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 6224269 - 6224369
Alignment:
Q  1 ttactagaaatcgagtttacctcagtgttaacacgattttggtacctaaaaacgtaaactcgataaactcggagagttaacactcgatttgcggaacatt 100  Q
    |||||||||| |||||| |||| || |||||||||||||  ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  6224269 ttactagaaaccgagttcacctaagagttaacacgatttgtgtacctaaaaacgtaaactcgataatctcggagagttaacactcgatttgcggaacatt 6224368  T
Q  101 g 101  Q
    |    
T  6224369 g 6224369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 13833111 - 13833211
Alignment:
Q  1 ttactagaaatcgagtttacctcagtgttaacacgattttggtacctaaaaacgtaaactcgataaactcggagagttaacactcgatttgcggaacatt 100  Q
    ||||||||||| ||||||||||||| |||||||||||||| ||||||||||||||||||||||||| |||| |||||||||| || ||||||||||||||    
T  13833111 ttactagaaattgagtttacctcagagttaacacgatttttgtacctaaaaacgtaaactcgataatctcgaagagttaacattcaatttgcggaacatt 13833210  T
Q  101 g 101  Q
    |    
T  13833211 g 13833211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 7027413 - 7027313
Alignment:
Q  1 ttactagaaatcgagtttacctcagtgttaacacgattttggtacctaaaaacgtaaactcgataaactcggagagttaacactcgatttgcggaacatt 100  Q
    |||| ||||| ||| |||||||||| |||||||||||||| ||||||||||| ||||||||||||| |||||||| ||||||||||||||||||||||||    
T  7027413 ttaccagaaaccgattttacctcagagttaacacgatttttgtacctaaaaatgtaaactcgataatctcggagatttaacactcgatttgcggaacatt 7027314  T
Q  101 g 101  Q
    |    
T  7027313 g 7027313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 25288673 - 25288573
Alignment:
Q  1 ttactagaaatcgagtttacctcagtgttaacacgattttggtacctaaaaacgtaaactcgataaactcggagagttaacactcgatttgcggaacatt 100  Q
    |||||||||| |||||||||||||| |||||||||||||| ||||||||||| ||||||||| ||| ||||||||||||| | |||||||||||||||||    
T  25288673 ttactagaaaccgagtttacctcagagttaacacgatttttgtacctaaaaatgtaaactcggtaatctcggagagttaatattcgatttgcggaacatt 25288574  T
Q  101 g 101  Q
    |    
T  25288573 g 25288573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 28739986 - 28740086
Alignment:
Q  1 ttactagaaatcgagtttacctcagtgttaacacgattttggtacctaaaaacgtaaactcgataaactcggagagttaacactcgatttgcggaacatt 100  Q
    |||| ||||| ||| |||||||||| |||||||||||||| |||||||||||| |||||||| ||| |||||||||||||||||||||||||||||||||    
T  28739986 ttaccagaaaccgattttacctcagagttaacacgatttttgtacctaaaaacataaactcggtaatctcggagagttaacactcgatttgcggaacatt 28740085  T
Q  101 g 101  Q
    |    
T  28740086 g 28740086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 6 - 101
Target Start/End: Complemental strand, 15224286 - 15224191
Alignment:
Q  6 agaaatcgagtttacctcagtgttaacacgattttggtacctaaaaacgtaaactcgataaactcggagagttaacactcgatttgcggaacattg 101  Q
    |||||||||||||||||| | |||||||||||||||||||||||| ||||||| | | ||||||||||| ||||||||||||||||||||||||||    
T  15224286 agaaatcgagtttacctctgagttaacacgattttggtacctaaacacgtaaaattggtaaactcggagtgttaacactcgatttgcggaacattg 15224191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 6 - 101
Target Start/End: Complemental strand, 28845090 - 28844995
Alignment:
Q  6 agaaatcgagtttacctcagtgttaacacgattttggtacctaaaaacgtaaactcgataaactcggagagttaacactcgatttgcggaacattg 101  Q
    ||||| ||| |||||||||| |||||||||||||| |||||||||||| |||||||||||| |||||||||||||||||||||||||||| |||||    
T  28845090 agaaaccgattttacctcagagttaacacgatttttgtacctaaaaacataaactcgataatctcggagagttaacactcgatttgcggatcattg 28844995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 8 - 101
Target Start/End: Complemental strand, 10657933 - 10657840
Alignment:
Q  8 aaatcgagtttacctcagtgttaacacgattttggtacctaaaaacgtaaactcgataaactcggagagttaacactcgatttgcggaacattg 101  Q
    ||||||| |||||||||| |||||||||||||| ||||||||||||||||||||| ||| ||| ||||||||||||||||||| ||||||||||    
T  10657933 aaatcgattttacctcagagttaacacgatttttgtacctaaaaacgtaaactcggtaatctcagagagttaacactcgatttacggaacattg 10657840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 34342299 - 34342199
Alignment:
Q  1 ttactagaaatcgagtttacctcagtgttaacacgattttggtacctaaaaacgtaaactcgataaactcggagagttaacactcgatttgcggaacatt 100  Q
    |||| ||||| ||||||||||| |||| ||||| |  ||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||    
T  34342299 ttaccagaaaccgagtttaccttagtgctaacatggatttggtacctaaaaacgtaaactcggtaaactcagagagttaacactcgatttgcggaacatt 34342200  T
Q  101 g 101  Q
    |    
T  34342199 g 34342199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 13 - 101
Target Start/End: Original strand, 214961 - 215049
Alignment:
Q  13 gagtttacctcagtgttaacacgattttggtacctaaaaacgtaaactcgataaactcggagagttaacactcgatttgcggaacattg 101  Q
    |||||||||| || |||||||||||||||||||||||||||||||| ||| ||| |||||| ||||||||||| |||||||||||||||    
T  214961 gagtttaccttagagttaacacgattttggtacctaaaaacgtaaattcggtaatctcggaaagttaacactcaatttgcggaacattg 215049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 18177781 - 18177681
Alignment:
Q  1 ttactagaaatcgagtttacctcagtgttaacacgattttggtacctaaaaacgtaaactcgataaactcggagagttaacactcgatttgcggaacatt 100  Q
    |||| ||||| ||| |||||||||| |||||||||||||| ||||||||||| ||||||||||||| |||| ||| |||||||||||||| |||||||||    
T  18177781 ttaccagaaaccgattttacctcagagttaacacgatttttgtacctaaaaatgtaaactcgataatctcgaagatttaacactcgatttacggaacatt 18177682  T
Q  101 g 101  Q
    |    
T  18177681 g 18177681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 26789295 - 26789195
Alignment:
Q  1 ttactagaaatcgagtttacctcagtgttaacacgattttggtacctaaaaacgtaaactcgataaactcggagagttaacactcgatttgcggaacatt 100  Q
    |||| ||||| ||| |||||||||| |||||||||||||| ||||||||||| || |||||||||| |||||||| |||||||||||||||| |||||||    
T  26789295 ttaccagaaaccgattttacctcagagttaacacgatttttgtacctaaaaatgtcaactcgataatctcggagatttaacactcgatttgcagaacatt 26789196  T
Q  101 g 101  Q
    |    
T  26789195 g 26789195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 6 - 101
Target Start/End: Complemental strand, 33136121 - 33136028
Alignment:
Q  6 agaaatcgagtttacctcagtgttaacacgattttggtacctaaaaacgtaaactcgataaactcggagagttaacactcgatttgcggaacattg 101  Q
    |||||||||||||||||||| |||||||||||||| |||||||||||| |||||||| |   ||| ||||||||||||||||||||||||||||||    
T  33136121 agaaatcgagtttacctcagagttaacacgatttttgtacctaaaaacataaactcggt--tctcagagagttaacactcgatttgcggaacattg 33136028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 16 - 101
Target Start/End: Complemental strand, 379425 - 379340
Alignment:
Q  16 tttacctcagtgttaacacgattttggtacctaaaaacgtaaactcgataaactcggagagttaacactcgatttgcggaacattg 101  Q
    |||||||||| |||||||||||||| ||||||||||||||||| ||| ||| |||  |||||||||||||||||||||||||||||    
T  379425 tttacctcagagttaacacgatttttgtacctaaaaacgtaaattcggtaatctcaaagagttaacactcgatttgcggaacattg 379340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 6 - 101
Target Start/End: Original strand, 31847263 - 31847359
Alignment:
Q  6 agaaatcgagtttacctcagtgttaacacgattttggtacctaaaaacgtaaa-ctcgataaactcggagagttaacactcgatttgcggaacattg 101  Q
    |||||| ||||||||||| | |||| || ||||||  |||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||    
T  31847263 agaaatagagtttacctccgagttaccatgattttaatacctaaaaacgtaaaactcgataaactcggagagttaacactcgatttgaggaacattg 31847359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 18899968 - 18900068
Alignment:
Q  1 ttactagaaatcgagtttacctcagtgttaacacgattttggtacctaaaaacgtaaactcgataaactcggagagttaacactcgatttgcggaacatt 100  Q
    ||||||||||||||||||||||| | ||||||||| |||| | ||||||| ||||||||||| ||||||||  ||||| |||| ||||||| ||||||||    
T  18899968 ttactagaaatcgagtttacctccgagttaacacgtttttagcacctaaacacgtaaactcggtaaactcgccgagttgacacgcgatttgtggaacatt 18900067  T
Q  101 g 101  Q
    |    
T  18900068 g 18900068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 40829697 - 40829596
Alignment:
Q  1 ttactagaaatcgagtttacctcagtgttaacacgattttggtacctaaaaacgtaaactcgataaa--ctcggagagttaacactcgatttgcggaaca 98  Q
    |||| ||||| |||||||||||| | ||||||||||||||| |||||||||| ||| ||||| ||||  |||||||||||||||||| |||| |||||||    
T  40829697 ttaccagaaaccgagtttacctccgagttaacacgattttgatacctaaaaatgtagactcggtaaactctcggagagttaacactcaatttacggaaca 40829598  T
Q  99 tt 100  Q
    ||    
T  40829597 tt 40829596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 16 - 90
Target Start/End: Original strand, 2308769 - 2308843
Alignment:
Q  16 tttacctcagtgttaacacgattttggtacctaaaaacgtaaactcgataaactcggagagttaacactcgattt 90  Q
    |||||||| | ||||||||||||||||||| |||||||||||| |  |||||||||| |||||||||||||||||    
T  2308769 tttacctccgagttaacacgattttggtacataaaaacgtaaatttaataaactcggcgagttaacactcgattt 2308843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 36 - 100
Target Start/End: Complemental strand, 3464115 - 3464051
Alignment:
Q  36 attttggtacctaaaaacgtaaactcgataaactcggagagttaacactcgatttgcggaacatt 100  Q
    ||||| ||||||||||| ||||||||| ||| |||||||||||||||| ||||||||||||||||    
T  3464115 atttttgtacctaaaaatgtaaactcggtaatctcggagagttaacacacgatttgcggaacatt 3464051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 3575351 - 3575251
Alignment:
Q  1 ttactagaaatcgagtttacctcagtgttaacacgattttggtacctaaaaacgtaaactcgataaactcggagagttaacactcgatttgcggaacatt 100  Q
    |||| ||||| ||| |||||||||| ||||||| |||||| ||||||||||||||||||||  ||| |||||| |||||| | |||||||| || |||||    
T  3575351 ttaccagaaaccgattttacctcagagttaacatgatttttgtacctaaaaacgtaaactcagtaatctcggatagttaatattcgatttgagggacatt 3575252  T
Q  101 g 101  Q
    |    
T  3575251 g 3575251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 15926439 - 15926377
Alignment:
Q  1 ttactagaaatcgagtttacctcagtgttaacacgattttggtacctaaaaacgtaaactcga 63  Q
    |||| |||||||||||| ||||| | ||| |||||||||||||||| ||||||||||||||||    
T  15926439 ttaccagaaatcgagttaacctccgagttgacacgattttggtaccaaaaaacgtaaactcga 15926377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 3 - 100
Target Start/End: Original strand, 43305014 - 43305111
Alignment:
Q  3 actagaaatcgagtttacctcagtgttaacacgattttggtaccta-aaaacgtaaactcgataaactcggagagttaacactcgatttgcggaacatt 100  Q
    ||||| ||||||||||||||| | |||||||| | |||| |||||| |||||| ||||||| ||||||||  || ||||||||||||||| ||||||||    
T  43305014 actagtaatcgagtttacctc-gagttaacactagtttgatacctataaaacgaaaactcggtaaactcgacgaattaacactcgatttgtggaacatt 43305111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 12 - 101
Target Start/End: Original strand, 35404370 - 35404450
Alignment:
Q  12 cgagtttacctcagtgttaacacgattttggtacctaaaaacgtaaactcgataaactcggagagttaacactcgatttgcggaacattg 101  Q
    ||||||||||||   ||||||||||||| |||||||||||||||||||||||         ||||||||||||||||||||| |||||||    
T  35404370 cgagtttacctctaagttaacacgatttcggtacctaaaaacgtaaactcga---------agagttaacactcgatttgcgtaacattg 35404450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 32242246 - 32242306
Alignment:
Q  1 ttactagaaatcgagtttacctcagtgttaacacgattttggtacctaaaaacgtaaactc 61  Q
    |||| ||||||| |||||||||||| |||||||||||||||||| || |||| ||||||||    
T  32242246 ttacaagaaatcaagtttacctcagagttaacacgattttggtatctcaaaatgtaaactc 32242306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 32293973 - 32293914
Alignment:
Q  1 ttactagaaatcgagtttacctcagtgttaacacgattttggtacctaaaaacgtaaactc 61  Q
    |||| ||||||| ||||||| ||||  ||||||||||||||||||| ||||||||||||||    
T  32293973 ttacaagaaatccagtttacatcagatttaacacgattttggtacc-aaaaacgtaaactc 32293914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 12 - 63
Target Start/End: Complemental strand, 3991823 - 3991772
Alignment:
Q  12 cgagtttacctcagtgttaacacgattttggtacctaaaaacgtaaactcga 63  Q
    |||||||||||| | ||||||||| |||||  ||||||||||||||||||||    
T  3991823 cgagtttacctccgagttaacacgtttttgccacctaaaaacgtaaactcga 3991772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 1833746 - 1833808
Alignment:
Q  1 ttactagaaatcgagtttacctcagtgttaacacgattttggtacctaaaaacgtaaactcga 63  Q
    |||| ||||||||| ||||||||    || ||||||||||| |||||||||||||||||||||    
T  1833746 ttaccagaaatcgaatttacctccaaattgacacgattttgttacctaaaaacgtaaactcga 1833808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 62
Target Start/End: Complemental strand, 12877736 - 12877686
Alignment:
Q  12 cgagtttacctcagtgttaacacgattttggtacctaaaaacgtaaactcg 62  Q
    |||||||||||| | ||||||||| |||||  |||||||||||||||||||    
T  12877736 cgagtttacctccgagttaacacgtttttgccacctaaaaacgtaaactcg 12877686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 11153390 - 11153447
Alignment:
Q  1 ttactagaaatcgagtttacctcagtgttaacacgattttggtacctaaaaacgtaaa 58  Q
    |||| ||||| |||||||||||| | |||||||||||||  | |||||||||||||||    
T  11153390 ttaccagaaaccgagtttacctccgagttaacacgatttcagcacctaaaaacgtaaa 11153447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 8 - 61
Target Start/End: Complemental strand, 13898530 - 13898477
Alignment:
Q  8 aaatcgagtttacctcagtgttaacacgattttggtacctaaaaacgtaaactc 61  Q
    |||||||||||||||| | ||||||||| |||||   |||||||||||||||||    
T  13898530 aaatcgagtttacctccgagttaacacgtttttgccgcctaaaaacgtaaactc 13898477  T

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Target: chr2; HSP #31
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 8 - 61
Target Start/End: Complemental strand, 14039147 - 14039094
Alignment:
Q  8 aaatcgagtttacctcagtgttaacacgattttggtacctaaaaacgtaaactc 61  Q
    |||||||||||||||| | ||||||||| |||||   |||||||||||||||||    
T  14039147 aaatcgagtttacctccgagttaacacgtttttgccgcctaaaaacgtaaactc 14039094  T

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Target: chr2; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 73 - 101
Target Start/End: Complemental strand, 43825327 - 43825299
Alignment:
Q  73 agagttaacactcgatttgcggaacattg 101  Q
    |||||||||||||||||||||||||||||    
T  43825327 agagttaacactcgatttgcggaacattg 43825299  T

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Target: scaffold0543 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: scaffold0543
Description:

Target: scaffold0543; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 8 - 101
Target Start/End: Complemental strand, 11027 - 10934
Alignment:
Q  8 aaatcgagtttacctcagtgttaacacgattttggtacctaaaaacgtaaactcgataaactcggagagttaacactcgatttgcggaacattg 101  Q
    ||||||| |||||||||| |||||||||||||| ||||||||||| ||||||||| ||| ||||||||||||||||||||||||||||||||||    
T  11027 aaatcgaatttacctcagagttaacacgatttttgtacctaaaaatgtaaactcggtaatctcggagagttaacactcgatttgcggaacattg 10934  T

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Target: scaffold1504 (Bit Score: 69; Significance: 4e-31; HSPs: 1)
Name: scaffold1504
Description:

Target: scaffold1504; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 1376 - 1276
Alignment:
Q  1 ttactagaaatcgagtttacctcagtgttaacacgattttggtacctaaaaacgtaaactcgataaactcggagagttaacactcgatttgcggaacatt 100  Q
    |||| ||||| ||| |||||||||| |||||||||||||| ||||||||||||||||||||| ||| |||||||||||||||||||||||| ||||||||    
T  1376 ttacaagaaaccgattttacctcagagttaacacgatttttgtacctaaaaacgtaaactcggtaatctcggagagttaacactcgatttgtggaacatt 1277  T
Q  101 g 101  Q
    |    
T  1276 g 1276  T

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Target: scaffold1128 (Bit Score: 69; Significance: 4e-31; HSPs: 1)
Name: scaffold1128
Description:

Target: scaffold1128; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 944 - 1044
Alignment:
Q  1 ttactagaaatcgagtttacctcagtgttaacacgattttggtacctaaaaacgtaaactcgataaactcggagagttaacactcgatttgcggaacatt 100  Q
    |||| ||||| |||||||||||| | |||||||||||||||||||||||| ||||||||||| ||||||| ||| |||||||||||||||||||||||||    
T  944 ttaccagaaaccgagtttacctccgagttaacacgattttggtacctaaacacgtaaactcggtaaactcagagtgttaacactcgatttgcggaacatt 1043  T
Q  101 g 101  Q
    |    
T  1044 g 1044  T

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Target: scaffold0110 (Bit Score: 69; Significance: 4e-31; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 39327 - 39419
Alignment:
Q  1 ttactagaaatcgagtttacctcagtgttaacacgattttggtacctaaaaacgtaaactcgataaactcggagagttaacactcgatttgcg 93  Q
    |||| ||||| |||||| ||||||| |||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||    
T  39327 ttaccagaaaccgagttgacctcagggttaacacgattttggtacctaaaaacgtaaactcggtaatctcggagagttaacactcgatttgcg 39419  T

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Target: scaffold0013 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 89341 - 89241
Alignment:
Q  1 ttactagaaatcgagtttacctcagtgttaacacgattttggtacctaaaaacgtaaactcgataaactcggagagttaacactcgatttgcggaacatt 100  Q
    |||| |||||||||||||||||    ||||||||||| ||||||||||||||| ||||||||||||||||  |||||||||||||||||| |||||||||    
T  89341 ttaccagaaatcgagtttaccttcaagttaacacgatattggtacctaaaaacttaaactcgataaactcacagagttaacactcgatttacggaacatt 89242  T
Q  101 g 101  Q
    |    
T  89241 g 89241  T

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Target: scaffold0573 (Bit Score: 46; Significance: 2e-17; HSPs: 2)
Name: scaffold0573
Description:

Target: scaffold0573; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 8917 - 8856
Alignment:
Q  1 ttactagaaatcgagtttacctcagtgttaacacgattttggtacctaaaaacgtaaactcg 62  Q
    |||| |||||||||||||||||||| |||||||||||||||||||||||| | |||||||||    
T  8917 ttaccagaaatcgagtttacctcagagttaacacgattttggtacctaaacatgtaaactcg 8856  T

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Target: scaffold0573; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 64 - 98
Target Start/End: Complemental strand, 8863 - 8829
Alignment:
Q  64 taaactcggagagttaacactcgatttgcggaaca 98  Q
    ||||||||||||||||||||||||||| |||||||    
T  8863 taaactcggagagttaacactcgatttacggaaca 8829  T

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Target: scaffold0246 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0246
Description:

Target: scaffold0246; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 12 - 61
Target Start/End: Original strand, 25651 - 25700
Alignment:
Q  12 cgagtttacctcagtgttaacacgattttggtacctaaaaacgtaaactc 61  Q
    |||||||||||| | ||||||||| |||||  ||||||||||||||||||    
T  25651 cgagtttacctccgagttaacacgtttttgccacctaaaaacgtaaactc 25700  T

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