View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19240_high_42 (Length: 234)
Name: NF19240_high_42
Description: NF19240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19240_high_42 |
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| [»] scaffold0522 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 187; Significance: 1e-101; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 13 - 215
Target Start/End: Complemental strand, 2665151 - 2664949
Alignment:
| Q |
13 |
agcagagacaagggggataattggggaaagcgtaacaggggcaggaggagtaacaactacaggcgtaatagggacaggggtagaaggttcaacaggggag |
112 |
Q |
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| T |
2665151 |
agcagggacaagggggataattggggaaagcgtaacaggggaaggaggagtaacaactacaggcgtaatagggacaggggtagaaggttcaacaggggag |
2665052 |
T |
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| Q |
113 |
ggcataataggattagaagactcaacagggacagtgggctcaacaggggcaggtggtacaagaacaagagggtcaattgggggaaccgtaacaggggcag |
212 |
Q |
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| T |
2665051 |
ggcataacaggattagaagactcaacagggacagtgggctcaacaggggcaggtggtacaggaacaagagggtcaattgggggaaccgtaacaggggcag |
2664952 |
T |
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| Q |
213 |
gag |
215 |
Q |
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||| |
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| T |
2664951 |
gag |
2664949 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 31 - 90
Target Start/End: Complemental strand, 2664977 - 2664918
Alignment:
| Q |
31 |
aattggggaaagcgtaacaggggcaggaggagtaacaactacaggcgtaatagggacagg |
90 |
Q |
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|||||||| || ||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
2664977 |
aattgggggaaccgtaacaggggcaggaggagtaacaacgacaggcgtaatagggacagg |
2664918 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0522 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0522
Description:
Target: scaffold0522; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 31 - 68
Target Start/End: Original strand, 690 - 727
Alignment:
| Q |
31 |
aattggggaaagcgtaacaggggcaggaggagtaacaa |
68 |
Q |
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| T |
690 |
aattgggggaagcgtaacaggggcaggaggcgtaacaa |
727 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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