View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19240_low_1 (Length: 581)
Name: NF19240_low_1
Description: NF19240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19240_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 326; Significance: 0; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 199 - 560
Target Start/End: Complemental strand, 8894248 - 8893887
Alignment:
| Q |
199 |
tatcccatggaagacaaatgtatggttcctcgttatagagtacctaatgctccaaaacgtgaacactgcatatgcatcacaatcttcttcctcgtacttg |
298 |
Q |
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| T |
8894248 |
tatcccatggaacacaaaggtatggttcctcgttatagagtacctaatgctccaaaacgtgaacactgcatatgcatcacaatcttcttccttgtacttg |
8894149 |
T |
|
| Q |
299 |
gcattataatcctcatcttatggcttgcataccatcccacaaaacctcacatcacagtcacaagtgctgctatctatggcctcaatgcaacttcaccacc |
398 |
Q |
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| T |
8894148 |
gcattataatcctcatcttatggcttgcataccatccctcaaaacctcatatcacagtcacaagtgctgcaatctatagcctcaatgctacttcaccgcc |
8894049 |
T |
|
| Q |
399 |
agacatgtcaatctcaatgcaattcacaatcttcataaggaatccaaacaagcgagtatccatttactttgacaggctttccacctttgtgtcatataga |
498 |
Q |
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| T |
8894048 |
agacatgtcaatctcaatgcaattcacaatcttcataaggaatccaaacaagcgagtatccatttactttgacaggctttccacctttgtgtcatataga |
8893949 |
T |
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| Q |
499 |
aaccatccgattacacctcatcatatgcttccgtcgctttacttggagaagcatgaaaccgt |
560 |
Q |
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| T |
8893948 |
aaccatccgattacacctcatcatatgcttccgtcgctttacttggagaagcatgaaaccgt |
8893887 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 49 - 134
Target Start/End: Complemental strand, 8894476 - 8894391
Alignment:
| Q |
49 |
atggaagaagagataatgcatatagaacgtcaagaagatcctaaccaacaaccccattcacaacgtcatttccctaacaaaatgcc |
134 |
Q |
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| T |
8894476 |
atggaaggagaaataatgcatatagaacgtcaagaagatcctaaccaacaaccccattcacaacgtcatttccctaacaaaatgcc |
8894391 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 274 - 313
Target Start/End: Complemental strand, 212389 - 212350
Alignment:
| Q |
274 |
atcacaatcttcttcctcgtacttggcattataatcctca |
313 |
Q |
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| T |
212389 |
atcacaatcttcttcctcttacttggcattatactcctca |
212350 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 274 - 313
Target Start/End: Original strand, 239865 - 239904
Alignment:
| Q |
274 |
atcacaatcttcttcctcgtacttggcattataatcctca |
313 |
Q |
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| T |
239865 |
atcacaatcttcttcctcttacttggcattatactcctca |
239904 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 274 - 313
Target Start/End: Complemental strand, 726012 - 725973
Alignment:
| Q |
274 |
atcacaatcttcttcctcgtacttggcattataatcctca |
313 |
Q |
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| T |
726012 |
atcacaatcttcttcctcttacttggcattatactcctca |
725973 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 274 - 313
Target Start/End: Original strand, 793220 - 793259
Alignment:
| Q |
274 |
atcacaatcttcttcctcgtacttggcattataatcctca |
313 |
Q |
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| T |
793220 |
atcacaatcttcttcctcttacttggcattatactcctca |
793259 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 274 - 313
Target Start/End: Complemental strand, 798513 - 798474
Alignment:
| Q |
274 |
atcacaatcttcttcctcgtacttggcattataatcctca |
313 |
Q |
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| T |
798513 |
atcacaatcttcttcctcttacttggcattatactcctca |
798474 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 63; Significance: 4e-27; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 250 - 332
Target Start/End: Complemental strand, 24281937 - 24281855
Alignment:
| Q |
250 |
ccaaaacgtgaacactgcatatgcatcacaatcttcttcctcgtacttggcattataatcctcatcttatggcttgcatacca |
332 |
Q |
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| T |
24281937 |
ccaaaacgtgaatattgcatatgcatcacaatcttcttcctcttacttggcattatactgctcatcttatggcttgcatacca |
24281855 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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