View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19240_low_11 (Length: 439)
Name: NF19240_low_11
Description: NF19240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19240_low_11 |
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| [»] scaffold0071 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 388; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 1 - 432
Target Start/End: Original strand, 27499424 - 27499855
Alignment:
| Q |
1 |
caaagcaaaagtcaatgctttgagccaagtggtacctgatttgggagcggtaactaagatgatatctgaatctagggcttgaaagtgcttttgacaagat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
27499424 |
caaagcaaaagtcaatgctttgagccaagtggtacctgatttgggagcggtaactaagatgatatctgaatctagggcttgaaagtgcttctgacaagat |
27499523 |
T |
|
| Q |
101 |
aaaacaccttggagaatttttgtggcaatccaaaatccttgatattgatgggtgtgggttaaaatccatgctttttctgatggcaaggtgggtatcaact |
200 |
Q |
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||||||||||| | ||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
27499524 |
aaaacaccttgaaatttttttgtggcaatccaaaatccttgatattgataggtgtgggttaaaatccaggctttttctgatggcaaggtgggtatcaact |
27499623 |
T |
|
| Q |
201 |
ccttgcattcttggcttaagtcatcatcttgcaagtatttggctacaaaagagttttcatcacttgattttaccatggttatgggtagtcaaagcttaat |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27499624 |
ccttgcattcttggcttaagtcatcatcttgcaagtatttggctacaaaagagttttcatcacttgattttaccatggttatgggtagtcaaagcttaat |
27499723 |
T |
|
| Q |
301 |
attgaaaggatagaaatagaaacgtttgtttttggttggcaatggtgcacatatccttgaagttgattcatataagtatagttcttacccaattaaggga |
400 |
Q |
| |
|
||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
27499724 |
attgaaatgatagaaatagaaacgtttgtttttagttggcaatggtgcacatatccttgaagttgattcatataagtatagttcctacccaattaaggga |
27499823 |
T |
|
| Q |
401 |
atgattcatttgtagatgctcaatattcttcg |
432 |
Q |
| |
|
||||||||||||||||||||||||||| |||| |
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| T |
27499824 |
atgattcatttgtagatgctcaatattattcg |
27499855 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 1 - 271
Target Start/End: Complemental strand, 27504496 - 27504226
Alignment:
| Q |
1 |
caaagcaaaagtcaatgctttgagccaagtggtacctgatttgggagcggtaactaagatgatatctgaatctagggcttgaaagtgcttttgacaagat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||| ||| | ||||||||||||||||||| ||||| |
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|
| T |
27504496 |
caaagcaaaagtcaatgctttgagccaagtggtacctgatttgggatttgtaactaagataatatctgtatcaatggcttgaaagtgcttttgaaaagat |
27504397 |
T |
|
| Q |
101 |
aaaacaccttggagaatttttgtggcaatccaaaatccttgatattgatg-ggtgtgggttaaaatccatgctttttctgatggcaaggtgggtatcaac |
199 |
Q |
| |
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||| ||||||||||||| || | |||| ||||||||||||||||| ||| ||||| | ||||| ||| | || |||||||||| ||||||| |
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| T |
27504396 |
aaagcaccttggagaatcttgggagcaaaccaaaatccttgatattcatgaaaggtgggat-cgatccacccttctactaatggcaaggtttgtatcaag |
27504298 |
T |
|
| Q |
200 |
tccttgcattcttggcttaagtcatcatcttgcaagtatttggctacaaaagagttttcatcacttgatttt |
271 |
Q |
| |
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|||||||||||||| | ||||||||| |||| ||||||||| | | | || ||||||||||||||||||| |
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| T |
27504297 |
tccttgcattcttgccctaagtcatcttctttcaagtattttggcagagtagggttttcatcacttgatttt |
27504226 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 163 - 213
Target Start/End: Complemental strand, 27544091 - 27544041
Alignment:
| Q |
163 |
aatccatgctttttctgatggcaaggtgggtatcaactccttgcattcttg |
213 |
Q |
| |
|
||||||| |||||||| ||||||| |||| ||||||||||||||||||||| |
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| T |
27544091 |
aatccatcctttttctaatggcaatgtggatatcaactccttgcattcttg |
27544041 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 132; Significance: 2e-68; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 2 - 277
Target Start/End: Original strand, 11439455 - 11439730
Alignment:
| Q |
2 |
aaagcaaaagtcaatgctttgagccaagtggtacctgatttgggagcggtaactaagatgatatctgaatctagggcttgaaagtgcttttgacaagata |
101 |
Q |
| |
|
|||||||| || |||||||||||||||||||||||||||||||||| ||||||||||| |||||||| || |||||||||||||| ||||||||||||| |
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| T |
11439455 |
aaagcaaaggttaatgctttgagccaagtggtacctgatttgggagtggtaactaagaggatatctgtattaagggcttgaaagtgtttttgacaagata |
11439554 |
T |
|
| Q |
102 |
aaacaccttggagaatttttgtggcaatccaaaatccttgatattgatgggtgtgggttaaaatccatgctttttctgatggcaaggtgggtatcaactc |
201 |
Q |
| |
|
|||||||||| |||||| | ||| ||||||||||||||||||||||||| |||||| |||||| |||||||| |||| ||||| |||| ||||| |
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|
| T |
11439555 |
aaacaccttgaagaattctcgtgccaatccaaaatccttgatattgatgaaagtgggtactgatccatcctttttctaatggtaaggtttgtattaactc |
11439654 |
T |
|
| Q |
202 |
cttgcattcttggcttaagtcatcatcttgcaagtatttggctacaaaagagttttcatcacttgattttaccatg |
277 |
Q |
| |
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||||||||||| || ||| ||||| |||||||||||||| | |||| |||||||||||||| | ||||| ||||| |
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|
| T |
11439655 |
cttgcattctttgcctaactcatcttcttgcaagtattttggcacaagagagttttcatcacctaattttgccatg |
11439730 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 7 - 240
Target Start/End: Original strand, 11317884 - 11318117
Alignment:
| Q |
7 |
aaaagtcaatgctttgagccaagtggtacctgatttgggagcggtaactaagatgatatctgaatctagggcttgaaagtgcttttgacaagataaaaca |
106 |
Q |
| |
|
||||||||||||||| ||||||||||| |||| ||| |||| |||||||| || |||||| | ||| ||||||||||| ||||| |||||||||||| | |
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| T |
11317884 |
aaaagtcaatgctttaagccaagtggtgcctgcttttggagtggtaactatgaggatatcagtatcaagggcttgaaattgcttatgacaagataaagta |
11317983 |
T |
|
| Q |
107 |
ccttggagaatttttgtggcaatccaaaatccttgatattgatgggtgtgggttaaaatccatgctttttctgatggcaaggtgggtatcaactccttgc |
206 |
Q |
| |
|
||||||||||| |||||| || |||||||||||||||||||||| ||||| | |||||| |||||||| ||||||||||||||||||||||||| | |
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|
| T |
11317984 |
ccttggagaatccttgtggtaagccaaaatccttgatattgatggaagtgggatgtaatccaacctttttctaatggcaaggtgggtatcaactccttac |
11318083 |
T |
|
| Q |
207 |
attcttggcttaagtcatcatcttgcaagtattt |
240 |
Q |
| |
|
||||||||| ||| ||| | |||||| |||||| |
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|
| T |
11318084 |
attcttggcctaactcagctgcttgcatgtattt |
11318117 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 32 - 240
Target Start/End: Complemental strand, 15460517 - 15460309
Alignment:
| Q |
32 |
gtacctgatttgggagcggtaactaagatgatatctgaatctagggcttgaaagtgcttttgacaagataaaacaccttggagaatttttgtggcaatcc |
131 |
Q |
| |
|
||||||| ||| |||| |||| | | ||| ||||||| ||| |||||||||||||||||||| |||||||||| ||||| ||| ||| ||| || |
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|
| T |
15460517 |
gtacctgcttttggagaggtagcaaggattatatctgtatcatgggcttgaaagtgcttttgaaaagataaaactccttgaagatgctttttggtttgcc |
15460418 |
T |
|
| Q |
132 |
aaaatccttgatattgatgggtgtgggttaaaatccatgctttttctgatggcaaggtgggtatcaactccttgcattcttggcttaagtcatcatcttg |
231 |
Q |
| |
|
|||||||||||||||| || ||||||| ||| ||| |||| || ||| ||||| |||||||||| ||||||||| || ||| |||||| ||||| |
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|
| T |
15460417 |
aaaatccttgatattggtgaaggtgggttgaaacccagcctttctccattggtaaggtttgtatcaactctttgcattctagggttatgtcatcttcttg |
15460318 |
T |
|
| Q |
232 |
caagtattt |
240 |
Q |
| |
|
||||||||| |
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|
| T |
15460317 |
caagtattt |
15460309 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0071 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0071
Description:
Target: scaffold0071; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 32 - 240
Target Start/End: Original strand, 1675 - 1883
Alignment:
| Q |
32 |
gtacctgatttgggagcggtaactaagatgatatctgaatctagggcttgaaagtgcttttgacaagataaaacaccttggagaatttttgtggcaatcc |
131 |
Q |
| |
|
||||||| ||| |||| |||| | | ||| ||||||| ||| |||||||||||||||||||| |||||||||| ||||| ||| ||| ||| || |
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| T |
1675 |
gtacctgcttttggagaggtagcaaggattatatctgtatcatgggcttgaaagtgcttttgaaaagataaaactccttgaagatgctttttggtttgcc |
1774 |
T |
|
| Q |
132 |
aaaatccttgatattgatgggtgtgggttaaaatccatgctttttctgatggcaaggtgggtatcaactccttgcattcttggcttaagtcatcatcttg |
231 |
Q |
| |
|
|||||||||||||||| || ||||||| ||| ||| |||| || ||| ||||| |||||||||| ||||||||| || ||| |||||| ||||| |
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|
| T |
1775 |
aaaatccttgatattggtgaaggtgggttgaaacccagcctttctccattggtaaggtttgtatcaactctttgcattctagggttatgtcatcttcttg |
1874 |
T |
|
| Q |
232 |
caagtattt |
240 |
Q |
| |
|
||||||||| |
|
|
| T |
1875 |
caagtattt |
1883 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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