View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19240_low_12 (Length: 398)

Name: NF19240_low_12
Description: NF19240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19240_low_12
NF19240_low_12
[»] scaffold0380 (1 HSPs)
scaffold0380 (8-47)||(4010-4049)
[»] scaffold0139 (1 HSPs)
scaffold0139 (8-47)||(23941-23980)
[»] scaffold0109 (1 HSPs)
scaffold0109 (8-47)||(37201-37240)
[»] scaffold0029 (1 HSPs)
scaffold0029 (8-47)||(62843-62882)
[»] chr8 (3 HSPs)
chr8 (8-47)||(21386195-21386234)
chr8 (8-47)||(21328602-21328641)
chr8 (8-47)||(44385837-44385876)
[»] chr7 (15 HSPs)
chr7 (8-47)||(18301387-18301426)
chr7 (8-47)||(7520219-7520258)
chr7 (8-47)||(10607324-10607363)
chr7 (8-47)||(11660318-11660357)
chr7 (8-47)||(13891666-13891705)
chr7 (8-47)||(13892049-13892088)
chr7 (8-47)||(20486778-20486817)
chr7 (8-47)||(39268317-39268356)
chr7 (8-45)||(14420823-14420860)
chr7 (8-45)||(16005040-16005077)
chr7 (8-45)||(18606374-18606411)
chr7 (8-45)||(18871333-18871370)
chr7 (8-44)||(146536-146572)
chr7 (7-47)||(18424270-18424310)
chr7 (7-43)||(23666460-23666496)
[»] chr6 (7 HSPs)
chr6 (8-47)||(2076322-2076361)
chr6 (8-47)||(18918584-18918623)
chr6 (7-47)||(31479466-31479506)
chr6 (8-47)||(18953487-18953526)
chr6 (8-47)||(23400714-23400753)
chr6 (8-45)||(27222868-27222905)
chr6 (8-44)||(12941257-12941293)
[»] chr4 (16 HSPs)
chr4 (8-47)||(10711861-10711900)
chr4 (8-47)||(10925631-10925670)
chr4 (8-47)||(27532788-27532827)
chr4 (8-47)||(631751-631790)
chr4 (8-47)||(13813836-13813875)
chr4 (8-47)||(13818324-13818363)
chr4 (8-47)||(17052449-17052488)
chr4 (8-47)||(22634930-22634969)
chr4 (8-47)||(23996970-23997009)
chr4 (8-47)||(24048388-24048427)
chr4 (9-47)||(12422980-12423018)
chr4 (8-45)||(15533255-15533292)
chr4 (8-45)||(18211640-18211677)
chr4 (8-45)||(49549088-49549125)
chr4 (7-47)||(15223581-15223621)
chr4 (8-44)||(36036988-36037024)
[»] chr3 (20 HSPs)
chr3 (8-47)||(4590164-4590203)
chr3 (8-47)||(8491736-8491775)
chr3 (8-47)||(14068066-14068105)
chr3 (8-47)||(10834945-10834984)
chr3 (8-47)||(11912463-11912502)
chr3 (8-47)||(12853367-12853406)
chr3 (8-47)||(14670062-14670101)
chr3 (8-47)||(16795539-16795578)
chr3 (8-47)||(16840207-16840246)
chr3 (8-47)||(17318513-17318552)
chr3 (8-45)||(3802006-3802043)
chr3 (8-45)||(14764801-14764838)
chr3 (8-45)||(18899489-18899526)
chr3 (8-45)||(20249855-20249892)
chr3 (8-45)||(29545944-29545981)
chr3 (8-45)||(54519633-54519670)
chr3 (11-47)||(8928871-8928907)
chr3 (8-44)||(9532294-9532330)
chr3 (8-44)||(12304210-12304246)
chr3 (7-47)||(16751905-16751945)
[»] chr1 (6 HSPs)
chr1 (8-47)||(21406289-21406328)
chr1 (8-47)||(22132102-22132141)
chr1 (8-45)||(16370961-16370998)
chr1 (7-47)||(39245174-39245214)
chr1 (7-47)||(39248729-39248769)
chr1 (7-47)||(41389668-41389708)
[»] chr5 (14 HSPs)
chr5 (8-45)||(22335518-22335555)
chr5 (7-47)||(15238121-15238161)
chr5 (7-47)||(22108453-22108493)
chr5 (7-46)||(9774975-9775014)
chr5 (8-46)||(22120596-22120634)
chr5 (8-45)||(19510498-19510535)
chr5 (8-45)||(22339048-22339085)
chr5 (8-45)||(23113408-23113445)
chr5 (8-45)||(28372087-28372124)
chr5 (8-45)||(37600014-37600051)
chr5 (8-45)||(38146424-38146461)
chr5 (7-47)||(10751852-10751892)
chr5 (7-47)||(20912256-20912296)
chr5 (9-45)||(41878657-41878693)
[»] scaffold0599 (1 HSPs)
scaffold0599 (8-47)||(4157-4196)
[»] scaffold0575 (1 HSPs)
scaffold0575 (8-47)||(6964-7003)
[»] scaffold0293 (1 HSPs)
scaffold0293 (8-47)||(21343-21382)
[»] scaffold0124 (1 HSPs)
scaffold0124 (8-47)||(25571-25610)
[»] scaffold0031 (1 HSPs)
scaffold0031 (8-47)||(37206-37245)
[»] scaffold0013 (1 HSPs)
scaffold0013 (8-47)||(74335-74374)
[»] chr2 (6 HSPs)
chr2 (8-47)||(21074511-21074550)
chr2 (8-45)||(6481820-6481857)
chr2 (8-45)||(6485287-6485324)
chr2 (8-45)||(9240710-9240747)
chr2 (8-45)||(19663563-19663600)
chr2 (8-45)||(20260293-20260330)
[»] scaffold0080 (2 HSPs)
scaffold0080 (9-47)||(28509-28547)
scaffold0080 (9-47)||(33974-34012)
[»] scaffold1427 (1 HSPs)
scaffold1427 (8-45)||(236-273)
[»] scaffold0842 (1 HSPs)
scaffold0842 (8-45)||(5278-5315)
[»] scaffold0337 (1 HSPs)
scaffold0337 (8-45)||(10827-10864)
[»] scaffold0026 (1 HSPs)
scaffold0026 (8-45)||(109637-109674)
[»] scaffold0012 (1 HSPs)
scaffold0012 (8-45)||(224148-224185)


Alignment Details
Target: scaffold0380 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0380
Description:

Target: scaffold0380; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 8 - 47
Target Start/End: Original strand, 4010 - 4049
Alignment:
Q  8 catcatcaaatacatttaacaactcctagataacatcatg 47  Q
    ||||||||| ||||||||||||||||||||||||||||||    
T  4010 catcatcaagtacatttaacaactcctagataacatcatg 4049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0139 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0139
Description:

Target: scaffold0139; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 8 - 47
Target Start/End: Complemental strand, 23980 - 23941
Alignment:
Q  8 catcatcaaatacatttaacaactcctagataacatcatg 47  Q
    ||||||||| ||||||||||||||||||||||||||||||    
T  23980 catcatcaagtacatttaacaactcctagataacatcatg 23941  T

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Target: scaffold0109 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0109
Description:

Target: scaffold0109; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 8 - 47
Target Start/End: Complemental strand, 37240 - 37201
Alignment:
Q  8 catcatcaaatacatttaacaactcctagataacatcatg 47  Q
    ||||||||| ||||||||||||||||||||||||||||||    
T  37240 catcatcaagtacatttaacaactcctagataacatcatg 37201  T

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Target: scaffold0029 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 8 - 47
Target Start/End: Complemental strand, 62882 - 62843
Alignment:
Q  8 catcatcaaatacatttaacaactcctagataacatcatg 47  Q
    ||||||||| ||||||||||||||||||||||||||||||    
T  62882 catcatcaagtacatttaacaactcctagataacatcatg 62843  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000004; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 8 - 47
Target Start/End: Original strand, 21386195 - 21386234
Alignment:
Q  8 catcatcaaatacatttaacaactcctagataacatcatg 47  Q
    ||||||||| ||||||||||||||||||||||||||||||    
T  21386195 catcatcaagtacatttaacaactcctagataacatcatg 21386234  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 8 - 47
Target Start/End: Original strand, 21328602 - 21328641
Alignment:
Q  8 catcatcaaatacatttaacaactcctagataacatcatg 47  Q
    ||||||||| ||||||||||||||| ||||||||||||||    
T  21328602 catcatcaagtacatttaacaactcatagataacatcatg 21328641  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 8 - 47
Target Start/End: Complemental strand, 44385876 - 44385837
Alignment:
Q  8 catcatcaaatacatttaacaactcctagataacatcatg 47  Q
    ||||||||| ||||||||||||||| ||||||||||||||    
T  44385876 catcatcaagtacatttaacaactcatagataacatcatg 44385837  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000004; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 8 - 47
Target Start/End: Original strand, 18301387 - 18301426
Alignment:
Q  8 catcatcaaatacatttaacaactcctagataacatcatg 47  Q
    ||||||||| ||||||||||||||||||||||||||||||    
T  18301387 catcatcaagtacatttaacaactcctagataacatcatg 18301426  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 8 - 47
Target Start/End: Complemental strand, 7520258 - 7520219
Alignment:
Q  8 catcatcaaatacatttaacaactcctagataacatcatg 47  Q
    ||||||||| ||||||||||||||| ||||||||||||||    
T  7520258 catcatcaagtacatttaacaactcatagataacatcatg 7520219  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 8 - 47
Target Start/End: Complemental strand, 10607363 - 10607324
Alignment:
Q  8 catcatcaaatacatttaacaactcctagataacatcatg 47  Q
    ||||||||| ||||||||||||||| ||||||||||||||    
T  10607363 catcatcaagtacatttaacaactcatagataacatcatg 10607324  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 8 - 47
Target Start/End: Original strand, 11660318 - 11660357
Alignment:
Q  8 catcatcaaatacatttaacaactcctagataacatcatg 47  Q
    ||||||||| ||||||||||||||| ||||||||||||||    
T  11660318 catcatcaagtacatttaacaactcatagataacatcatg 11660357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 8 - 47
Target Start/End: Original strand, 13891666 - 13891705
Alignment:
Q  8 catcatcaaatacatttaacaactcctagataacatcatg 47  Q
    ||||||||| ||||||||||||||| ||||||||||||||    
T  13891666 catcatcaagtacatttaacaactcatagataacatcatg 13891705  T

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Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 8 - 47
Target Start/End: Original strand, 13892049 - 13892088
Alignment:
Q  8 catcatcaaatacatttaacaactcctagataacatcatg 47  Q
    ||||||||| ||||||||||||||| ||||||||||||||    
T  13892049 catcatcaagtacatttaacaactcatagataacatcatg 13892088  T

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Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 8 - 47
Target Start/End: Original strand, 20486778 - 20486817
Alignment:
Q  8 catcatcaaatacatttaacaactcctagataacatcatg 47  Q
    ||||||||| ||||||||||||||| ||||||||||||||    
T  20486778 catcatcaagtacatttaacaactcatagataacatcatg 20486817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 8 - 47
Target Start/End: Complemental strand, 39268356 - 39268317
Alignment:
Q  8 catcatcaaatacatttaacaactcctagataacatcatg 47  Q
    ||||||||| ||||||||||||||| ||||||||||||||    
T  39268356 catcatcaagtacatttaacaactcatagataacatcatg 39268317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 45
Target Start/End: Original strand, 14420823 - 14420860
Alignment:
Q  8 catcatcaaatacatttaacaactcctagataacatca 45  Q
    ||||||||| ||||||||||||||| ||||||||||||    
T  14420823 catcatcaagtacatttaacaactcatagataacatca 14420860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 45
Target Start/End: Original strand, 16005040 - 16005077
Alignment:
Q  8 catcatcaaatacatttaacaactcctagataacatca 45  Q
    ||||||||| ||||||||||||||| ||||||||||||    
T  16005040 catcatcaagtacatttaacaactcatagataacatca 16005077  T

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Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 45
Target Start/End: Original strand, 18606374 - 18606411
Alignment:
Q  8 catcatcaaatacatttaacaactcctagataacatca 45  Q
    ||||||||| ||||||||||||||| ||||||||||||    
T  18606374 catcatcaagtacatttaacaactcatagataacatca 18606411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 45
Target Start/End: Original strand, 18871333 - 18871370
Alignment:
Q  8 catcatcaaatacatttaacaactcctagataacatca 45  Q
    ||||||||| ||||||||||||||| ||||||||||||    
T  18871333 catcatcaagtacatttaacaactcatagataacatca 18871370  T

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Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 8 - 44
Target Start/End: Original strand, 146536 - 146572
Alignment:
Q  8 catcatcaaatacatttaacaactcctagataacatc 44  Q
    ||||||||| ||||||||||||||| |||||||||||    
T  146536 catcatcaagtacatttaacaactcatagataacatc 146572  T

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Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 7 - 47
Target Start/End: Original strand, 18424270 - 18424310
Alignment:
Q  7 acatcatcaaatacatttaacaactcctagataacatcatg 47  Q
    |||||||||| ||||||||||||||| ||||||| ||||||    
T  18424270 acatcatcaagtacatttaacaactcatagataatatcatg 18424310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 7 - 43
Target Start/End: Complemental strand, 23666496 - 23666460
Alignment:
Q  7 acatcatcaaatacatttaacaactcctagataacat 43  Q
    |||||||||| ||||||||||||||| ||||||||||    
T  23666496 acatcatcaagtacatttaacaactcatagataacat 23666460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000004; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 8 - 47
Target Start/End: Original strand, 2076322 - 2076361
Alignment:
Q  8 catcatcaaatacatttaacaactcctagataacatcatg 47  Q
    ||||||||||||||||||||||||| ||||||||||||||    
T  2076322 catcatcaaatacatttaacaactcatagataacatcatg 2076361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 8 - 47
Target Start/End: Complemental strand, 18918623 - 18918584
Alignment:
Q  8 catcatcaaatacatttaacaactcctagataacatcatg 47  Q
    ||||||||| ||||||||||||||||||||||||||||||    
T  18918623 catcatcaagtacatttaacaactcctagataacatcatg 18918584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 7 - 47
Target Start/End: Complemental strand, 31479506 - 31479466
Alignment:
Q  7 acatcatcaaatacatttaacaactcctagataacatcatg 47  Q
    |||||||||||||||||||||||||| ||||||| ||||||    
T  31479506 acatcatcaaatacatttaacaactcatagataatatcatg 31479466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 8 - 47
Target Start/End: Complemental strand, 18953526 - 18953487
Alignment:
Q  8 catcatcaaatacatttaacaactcctagataacatcatg 47  Q
    ||||||||| ||||||||||||||||||||| ||||||||    
T  18953526 catcatcaagtacatttaacaactcctagatgacatcatg 18953487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 8 - 47
Target Start/End: Original strand, 23400714 - 23400753
Alignment:
Q  8 catcatcaaatacatttaacaactcctagataacatcatg 47  Q
    ||||||||| ||||||||||||||| ||||||||||||||    
T  23400714 catcatcaagtacatttaacaactcatagataacatcatg 23400753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 45
Target Start/End: Original strand, 27222868 - 27222905
Alignment:
Q  8 catcatcaaatacatttaacaactcctagataacatca 45  Q
    ||||||||| ||||||||||||||| ||||||||||||    
T  27222868 catcatcaagtacatttaacaactcatagataacatca 27222905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 8 - 44
Target Start/End: Original strand, 12941257 - 12941293
Alignment:
Q  8 catcatcaaatacatttaacaactcctagataacatc 44  Q
    ||||||||| ||||||||||||||| |||||||||||    
T  12941257 catcatcaagtacatttaacaactcatagataacatc 12941293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 8 - 47
Target Start/End: Original strand, 10711861 - 10711900
Alignment:
Q  8 catcatcaaatacatttaacaactcctagataacatcatg 47  Q
    ||||||||| ||||||||||||||||||||||||||||||    
T  10711861 catcatcaagtacatttaacaactcctagataacatcatg 10711900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 8 - 47
Target Start/End: Original strand, 10925631 - 10925670
Alignment:
Q  8 catcatcaaatacatttaacaactcctagataacatcatg 47  Q
    ||||||||| ||||||||||||||||||||||||||||||    
T  10925631 catcatcaagtacatttaacaactcctagataacatcatg 10925670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 8 - 47
Target Start/End: Original strand, 27532788 - 27532827
Alignment:
Q  8 catcatcaaatacatttaacaactcctagataacatcatg 47  Q
    ||||||||| ||||||||||||||||||||||||||||||    
T  27532788 catcatcaagtacatttaacaactcctagataacatcatg 27532827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 8 - 47
Target Start/End: Complemental strand, 631790 - 631751
Alignment:
Q  8 catcatcaaatacatttaacaactcctagataacatcatg 47  Q
    ||||||||| ||||||||||||||| ||||||||||||||    
T  631790 catcatcaagtacatttaacaactcatagataacatcatg 631751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 8 - 47
Target Start/End: Complemental strand, 13813875 - 13813836
Alignment:
Q  8 catcatcaaatacatttaacaactcctagataacatcatg 47  Q
    ||||||||| ||||||||||||||| ||||||||||||||    
T  13813875 catcatcaagtacatttaacaactcatagataacatcatg 13813836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 8 - 47
Target Start/End: Complemental strand, 13818363 - 13818324
Alignment:
Q  8 catcatcaaatacatttaacaactcctagataacatcatg 47  Q
    ||||||||| ||||||||||||||| ||||||||||||||    
T  13818363 catcatcaagtacatttaacaactcatagataacatcatg 13818324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 8 - 47
Target Start/End: Complemental strand, 17052488 - 17052449
Alignment:
Q  8 catcatcaaatacatttaacaactcctagataacatcatg 47  Q
    ||||||||| ||||||||||||||| ||||||||||||||    
T  17052488 catcatcaagtacatttaacaactcatagataacatcatg 17052449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 8 - 47
Target Start/End: Complemental strand, 22634969 - 22634930
Alignment:
Q  8 catcatcaaatacatttaacaactcctagataacatcatg 47  Q
    ||||||||| ||||||||||||||| ||||||||||||||    
T  22634969 catcatcaagtacatttaacaactcatagataacatcatg 22634930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 8 - 47
Target Start/End: Complemental strand, 23997009 - 23996970
Alignment:
Q  8 catcatcaaatacatttaacaactcctagataacatcatg 47  Q
    ||||||||| ||||||||||||||| ||||||||||||||    
T  23997009 catcatcaagtacatttaacaactcatagataacatcatg 23996970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 8 - 47
Target Start/End: Complemental strand, 24048427 - 24048388
Alignment:
Q  8 catcatcaaatacatttaacaactcctagataacatcatg 47  Q
    ||||||||| ||||||||||||||| ||||||||||||||    
T  24048427 catcatcaagtacatttaacaactcatagataacatcatg 24048388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 9 - 47
Target Start/End: Original strand, 12422980 - 12423018
Alignment:
Q  9 atcatcaaatacatttaacaactcctagataacatcatg 47  Q
    |||||||| ||||||||||||||| ||||||||||||||    
T  12422980 atcatcaagtacatttaacaactcatagataacatcatg 12423018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 45
Target Start/End: Original strand, 15533255 - 15533292
Alignment:
Q  8 catcatcaaatacatttaacaactcctagataacatca 45  Q
    ||||||||| ||||||||||||||| ||||||||||||    
T  15533255 catcatcaagtacatttaacaactcatagataacatca 15533292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 45
Target Start/End: Original strand, 18211640 - 18211677
Alignment:
Q  8 catcatcaaatacatttaacaactcctagataacatca 45  Q
    ||||||||| ||||||||||||||| ||||||||||||    
T  18211640 catcatcaagtacatttaacaactcatagataacatca 18211677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 45
Target Start/End: Complemental strand, 49549125 - 49549088
Alignment:
Q  8 catcatcaaatacatttaacaactcctagataacatca 45  Q
    ||||||||| ||||||||||||||| ||||||||||||    
T  49549125 catcatcaagtacatttaacaactcatagataacatca 49549088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 7 - 47
Target Start/End: Original strand, 15223581 - 15223621
Alignment:
Q  7 acatcatcaaatacatttaacaactcctagataacatcatg 47  Q
    |||||||||| ||||||||||||||| ||||||| ||||||    
T  15223581 acatcatcaagtacatttaacaactcatagataatatcatg 15223621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 8 - 44
Target Start/End: Original strand, 36036988 - 36037024
Alignment:
Q  8 catcatcaaatacatttaacaactcctagataacatc 44  Q
    ||||||||| ||||||||||||||| |||||||||||    
T  36036988 catcatcaagtacatttaacaactcatagataacatc 36037024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000004; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 8 - 47
Target Start/End: Complemental strand, 4590203 - 4590164
Alignment:
Q  8 catcatcaaatacatttaacaactcctagataacatcatg 47  Q
    ||||||||| ||||||||||||||||||||||||||||||    
T  4590203 catcatcaagtacatttaacaactcctagataacatcatg 4590164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 8 - 47
Target Start/End: Complemental strand, 8491775 - 8491736
Alignment:
Q  8 catcatcaaatacatttaacaactcctagataacatcatg 47  Q
    ||||||||| ||||||||||||||||||||||||||||||    
T  8491775 catcatcaagtacatttaacaactcctagataacatcatg 8491736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 8 - 47
Target Start/End: Complemental strand, 14068105 - 14068066
Alignment:
Q  8 catcatcaaatacatttaacaactcctagataacatcatg 47  Q
    |||||||||||||||||| |||||||||||||||||||||    
T  14068105 catcatcaaatacatttagcaactcctagataacatcatg 14068066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 8 - 47
Target Start/End: Complemental strand, 10834984 - 10834945
Alignment:
Q  8 catcatcaaatacatttaacaactcctagataacatcatg 47  Q
    ||||||||| ||||||||||||||| ||||||||||||||    
T  10834984 catcatcaagtacatttaacaactcatagataacatcatg 10834945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 8 - 47
Target Start/End: Original strand, 11912463 - 11912502
Alignment:
Q  8 catcatcaaatacatttaacaactcctagataacatcatg 47  Q
    ||||||||| ||||||||||||||| ||||||||||||||    
T  11912463 catcatcaagtacatttaacaactcatagataacatcatg 11912502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 8 - 47
Target Start/End: Complemental strand, 12853406 - 12853367
Alignment:
Q  8 catcatcaaatacatttaacaactcctagataacatcatg 47  Q
    ||||||||| ||||||||||||||| ||||||||||||||    
T  12853406 catcatcaagtacatttaacaactcatagataacatcatg 12853367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 8 - 47
Target Start/End: Original strand, 14670062 - 14670101
Alignment:
Q  8 catcatcaaatacatttaacaactcctagataacatcatg 47  Q
    ||||||||| ||||||||||||||| ||||||||||||||    
T  14670062 catcatcaagtacatttaacaactcatagataacatcatg 14670101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 8 - 47
Target Start/End: Original strand, 16795539 - 16795578
Alignment:
Q  8 catcatcaaatacatttaacaactcctagataacatcatg 47  Q
    ||||||||| ||||||||||||||| ||||||||||||||    
T  16795539 catcatcaagtacatttaacaactcatagataacatcatg 16795578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 8 - 47
Target Start/End: Complemental strand, 16840246 - 16840207
Alignment:
Q  8 catcatcaaatacatttaacaactcctagataacatcatg 47  Q
    ||||||||||||||||||||||||| ||||||| ||||||    
T  16840246 catcatcaaatacatttaacaactcatagataaaatcatg 16840207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 8 - 47
Target Start/End: Complemental strand, 17318552 - 17318513
Alignment:
Q  8 catcatcaaatacatttaacaactcctagataacatcatg 47  Q
    ||||||||| |||||||||||||||||||||||| |||||    
T  17318552 catcatcaagtacatttaacaactcctagataacttcatg 17318513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 45
Target Start/End: Original strand, 3802006 - 3802043
Alignment:
Q  8 catcatcaaatacatttaacaactcctagataacatca 45  Q
    ||||||||| ||||||||||||||| ||||||||||||    
T  3802006 catcatcaagtacatttaacaactcatagataacatca 3802043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 45
Target Start/End: Complemental strand, 14764838 - 14764801
Alignment:
Q  8 catcatcaaatacatttaacaactcctagataacatca 45  Q
    ||||||||| ||||||||||||||| ||||||||||||    
T  14764838 catcatcaagtacatttaacaactcatagataacatca 14764801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 45
Target Start/End: Original strand, 18899489 - 18899526
Alignment:
Q  8 catcatcaaatacatttaacaactcctagataacatca 45  Q
    ||||||||| ||||||||||||||| ||||||||||||    
T  18899489 catcatcaagtacatttaacaactcatagataacatca 18899526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 45
Target Start/End: Complemental strand, 20249892 - 20249855
Alignment:
Q  8 catcatcaaatacatttaacaactcctagataacatca 45  Q
    ||||||||| ||||||||||||||| ||||||||||||    
T  20249892 catcatcaagtacatttaacaactcatagataacatca 20249855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 45
Target Start/End: Complemental strand, 29545981 - 29545944
Alignment:
Q  8 catcatcaaatacatttaacaactcctagataacatca 45  Q
    ||||||||| ||||||||||||||| ||||||||||||    
T  29545981 catcatcaagtacatttaacaactcatagataacatca 29545944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 45
Target Start/End: Original strand, 54519633 - 54519670
Alignment:
Q  8 catcatcaaatacatttaacaactcctagataacatca 45  Q
    ||||||||| ||||||||||||||| ||||||||||||    
T  54519633 catcatcaagtacatttaacaactcatagataacatca 54519670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 11 - 47
Target Start/End: Complemental strand, 8928907 - 8928871
Alignment:
Q  11 catcaaatacatttaacaactcctagataacatcatg 47  Q
    |||||| ||||||||||||||| ||||||||||||||    
T  8928907 catcaagtacatttaacaactcatagataacatcatg 8928871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 8 - 44
Target Start/End: Original strand, 9532294 - 9532330
Alignment:
Q  8 catcatcaaatacatttaacaactcctagataacatc 44  Q
    ||||||||| ||||||||||||||| |||||||||||    
T  9532294 catcatcaagtacatttaacaactcatagataacatc 9532330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 8 - 44
Target Start/End: Original strand, 12304210 - 12304246
Alignment:
Q  8 catcatcaaatacatttaacaactcctagataacatc 44  Q
    ||||||||| ||||||||||||||| |||||||||||    
T  12304210 catcatcaagtacatttaacaactcatagataacatc 12304246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 7 - 47
Target Start/End: Complemental strand, 16751945 - 16751905
Alignment:
Q  7 acatcatcaaatacatttaacaactcctagataacatcatg 47  Q
    |||||||||| ||||||||||||||| ||||||| ||||||    
T  16751945 acatcatcaagtacatttaacaactcatagataatatcatg 16751905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 8 - 47
Target Start/End: Original strand, 21406289 - 21406328
Alignment:
Q  8 catcatcaaatacatttaacaactcctagataacatcatg 47  Q
    ||||||||| ||||||||||||||||||||||||||||||    
T  21406289 catcatcaagtacatttaacaactcctagataacatcatg 21406328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 8 - 47
Target Start/End: Complemental strand, 22132141 - 22132102
Alignment:
Q  8 catcatcaaatacatttaacaactcctagataacatcatg 47  Q
    ||||||||| ||||||||||||||| ||||||||||||||    
T  22132141 catcatcaagtacatttaacaactcatagataacatcatg 22132102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 45
Target Start/End: Original strand, 16370961 - 16370998
Alignment:
Q  8 catcatcaaatacatttaacaactcctagataacatca 45  Q
    ||||||||| ||||||||||||||| ||||||||||||    
T  16370961 catcatcaagtacatttaacaactcatagataacatca 16370998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 7 - 47
Target Start/End: Complemental strand, 39245214 - 39245174
Alignment:
Q  7 acatcatcaaatacatttaacaactcctagataacatcatg 47  Q
    |||||||||| ||||||||||||||| ||||||| ||||||    
T  39245214 acatcatcaagtacatttaacaactcatagataatatcatg 39245174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 7 - 47
Target Start/End: Complemental strand, 39248769 - 39248729
Alignment:
Q  7 acatcatcaaatacatttaacaactcctagataacatcatg 47  Q
    |||||||||| ||||||||||||||| ||||||| ||||||    
T  39248769 acatcatcaagtacatttaacaactcatagataatatcatg 39248729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 7 - 47
Target Start/End: Complemental strand, 41389708 - 41389668
Alignment:
Q  7 acatcatcaaatacatttaacaactcctagataacatcatg 47  Q
    |||||||||| ||||||||||||||| ||||||| ||||||    
T  41389708 acatcatcaagtacatttaacaactcatagataatatcatg 41389668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000006; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 8 - 45
Target Start/End: Original strand, 22335518 - 22335555
Alignment:
Q  8 catcatcaaatacatttaacaactcctagataacatca 45  Q
    ||||||||||||||||||||||||| ||||||||||||    
T  22335518 catcatcaaatacatttaacaactcatagataacatca 22335555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 7 - 47
Target Start/End: Complemental strand, 15238161 - 15238121
Alignment:
Q  7 acatcatcaaatacatttaacaactcctagataacatcatg 47  Q
    |||||||||| ||||||||||||||| ||||||||||||||    
T  15238161 acatcatcaagtacatttaacaactcatagataacatcatg 15238121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 7 - 47
Target Start/End: Complemental strand, 22108493 - 22108453
Alignment:
Q  7 acatcatcaaatacatttaacaactcctagataacatcatg 47  Q
    |||||||||| ||||||||||||||| ||||||||||||||    
T  22108493 acatcatcaagtacatttaacaactcatagataacatcatg 22108453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 7 - 46
Target Start/End: Original strand, 9774975 - 9775014
Alignment:
Q  7 acatcatcaaatacatttaacaactcctagataacatcat 46  Q
    |||||||||| ||||||||||||||| |||||||||||||    
T  9774975 acatcatcaagtacatttaacaactcatagataacatcat 9775014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 8 - 46
Target Start/End: Complemental strand, 22120634 - 22120596
Alignment:
Q  8 catcatcaaatacatttaacaactcctagataacatcat 46  Q
    ||||||||| ||||||||||||||| |||||||||||||    
T  22120634 catcatcaagtacatttaacaactcatagataacatcat 22120596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 45
Target Start/End: Original strand, 19510498 - 19510535
Alignment:
Q  8 catcatcaaatacatttaacaactcctagataacatca 45  Q
    ||||||||| ||||||||||||||| ||||||||||||    
T  19510498 catcatcaagtacatttaacaactcatagataacatca 19510535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 45
Target Start/End: Original strand, 22339048 - 22339085
Alignment:
Q  8 catcatcaaatacatttaacaactcctagataacatca 45  Q
    ||||||||| ||||||||||||||| ||||||||||||    
T  22339048 catcatcaagtacatttaacaactcatagataacatca 22339085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 45
Target Start/End: Complemental strand, 23113445 - 23113408
Alignment:
Q  8 catcatcaaatacatttaacaactcctagataacatca 45  Q
    ||||||||| ||||||||||||||| ||||||||||||    
T  23113445 catcatcaagtacatttaacaactcatagataacatca 23113408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 45
Target Start/End: Complemental strand, 28372124 - 28372087
Alignment:
Q  8 catcatcaaatacatttaacaactcctagataacatca 45  Q
    ||||||||| ||||||||||||||| ||||||||||||    
T  28372124 catcatcaagtacatttaacaactcatagataacatca 28372087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 45
Target Start/End: Complemental strand, 37600051 - 37600014
Alignment:
Q  8 catcatcaaatacatttaacaactcctagataacatca 45  Q
    ||||||||| ||||||||||||||| ||||||||||||    
T  37600051 catcatcaagtacatttaacaactcatagataacatca 37600014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 45
Target Start/End: Complemental strand, 38146461 - 38146424
Alignment:
Q  8 catcatcaaatacatttaacaactcctagataacatca 45  Q
    ||||||||| ||||||||||||||| ||||||||||||    
T  38146461 catcatcaagtacatttaacaactcatagataacatca 38146424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 7 - 47
Target Start/End: Original strand, 10751852 - 10751892
Alignment:
Q  7 acatcatcaaatacatttaacaactcctagataacatcatg 47  Q
    |||||||||| ||||||||||||||| ||||||| ||||||    
T  10751852 acatcatcaagtacatttaacaactcatagataatatcatg 10751892  T

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Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 7 - 47
Target Start/End: Complemental strand, 20912296 - 20912256
Alignment:
Q  7 acatcatcaaatacatttaacaactcctagataacatcatg 47  Q
    |||||||||| |||| |||||||||| ||||||||||||||    
T  20912296 acatcatcaagtacacttaacaactcatagataacatcatg 20912256  T

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Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 9 - 45
Target Start/End: Complemental strand, 41878693 - 41878657
Alignment:
Q  9 atcatcaaatacatttaacaactcctagataacatca 45  Q
    |||||||| ||||||||||||||| ||||||||||||    
T  41878693 atcatcaagtacatttaacaactcatagataacatca 41878657  T

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Target: scaffold0599 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0599
Description:

Target: scaffold0599; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 8 - 47
Target Start/End: Original strand, 4157 - 4196
Alignment:
Q  8 catcatcaaatacatttaacaactcctagataacatcatg 47  Q
    ||||||||| ||||||||||||||| ||||||||||||||    
T  4157 catcatcaagtacatttaacaactcatagataacatcatg 4196  T

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Target: scaffold0575 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0575
Description:

Target: scaffold0575; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 8 - 47
Target Start/End: Complemental strand, 7003 - 6964
Alignment:
Q  8 catcatcaaatacatttaacaactcctagataacatcatg 47  Q
    ||||||||| ||||||||||||||| ||||||||||||||    
T  7003 catcatcaagtacatttaacaactcatagataacatcatg 6964  T

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Target: scaffold0293 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0293
Description:

Target: scaffold0293; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 8 - 47
Target Start/End: Complemental strand, 21382 - 21343
Alignment:
Q  8 catcatcaaatacatttaacaactcctagataacatcatg 47  Q
    ||||||||| ||||||||||||||| ||||||||||||||    
T  21382 catcatcaagtacatttaacaactcatagataacatcatg 21343  T

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Target: scaffold0124 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0124
Description:

Target: scaffold0124; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 8 - 47
Target Start/End: Complemental strand, 25610 - 25571
Alignment:
Q  8 catcatcaaatacatttaacaactcctagataacatcatg 47  Q
    ||||||||| ||||||||||||||| ||||||||||||||    
T  25610 catcatcaagtacatttaacaactcatagataacatcatg 25571  T

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Target: scaffold0031 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 8 - 47
Target Start/End: Complemental strand, 37245 - 37206
Alignment:
Q  8 catcatcaaatacatttaacaactcctagataacatcatg 47  Q
    ||||||||| ||||||||||||||| ||||||||||||||    
T  37245 catcatcaagtacatttaacaactcatagataacatcatg 37206  T

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Target: scaffold0013 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 8 - 47
Target Start/End: Complemental strand, 74374 - 74335
Alignment:
Q  8 catcatcaaatacatttaacaactcctagataacatcatg 47  Q
    ||||||||| ||||||||||||||| ||||||||||||||    
T  74374 catcatcaagtacatttaacaactcatagataacatcatg 74335  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000009; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 8 - 47
Target Start/End: Complemental strand, 21074550 - 21074511
Alignment:
Q  8 catcatcaaatacatttaacaactcctagataacatcatg 47  Q
    ||||||||| ||||||||||||||| ||||||||||||||    
T  21074550 catcatcaagtacatttaacaactcatagataacatcatg 21074511  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 45
Target Start/End: Original strand, 6481820 - 6481857
Alignment:
Q  8 catcatcaaatacatttaacaactcctagataacatca 45  Q
    ||||||||| ||||||||||||||| ||||||||||||    
T  6481820 catcatcaagtacatttaacaactcatagataacatca 6481857  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 45
Target Start/End: Original strand, 6485287 - 6485324
Alignment:
Q  8 catcatcaaatacatttaacaactcctagataacatca 45  Q
    ||||||||| ||||||||||||||| ||||||||||||    
T  6485287 catcatcaagtacatttaacaactcatagataacatca 6485324  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 45
Target Start/End: Original strand, 9240710 - 9240747
Alignment:
Q  8 catcatcaaatacatttaacaactcctagataacatca 45  Q
    ||||||||| ||||||||||||||| ||||||||||||    
T  9240710 catcatcaagtacatttaacaactcatagataacatca 9240747  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 45
Target Start/End: Complemental strand, 19663600 - 19663563
Alignment:
Q  8 catcatcaaatacatttaacaactcctagataacatca 45  Q
    ||||||||| ||||||||||||||| ||||||||||||    
T  19663600 catcatcaagtacatttaacaactcatagataacatca 19663563  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 45
Target Start/End: Original strand, 20260293 - 20260330
Alignment:
Q  8 catcatcaaatacatttaacaactcctagataacatca 45  Q
    ||||||||| ||||||||||||||| ||||||||||||    
T  20260293 catcatcaagtacatttaacaactcatagataacatca 20260330  T

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Target: scaffold0080 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: scaffold0080
Description:

Target: scaffold0080; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 9 - 47
Target Start/End: Original strand, 28509 - 28547
Alignment:
Q  9 atcatcaaatacatttaacaactcctagataacatcatg 47  Q
    |||||||| ||||||||||||||| ||||||||||||||    
T  28509 atcatcaagtacatttaacaactcatagataacatcatg 28547  T

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Target: scaffold0080; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 9 - 47
Target Start/End: Original strand, 33974 - 34012
Alignment:
Q  9 atcatcaaatacatttaacaactcctagataacatcatg 47  Q
    |||||||| ||||||||||||||| ||||||||||||||    
T  33974 atcatcaagtacatttaacaactcatagataacatcatg 34012  T

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Target: scaffold1427 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold1427
Description:

Target: scaffold1427; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 45
Target Start/End: Original strand, 236 - 273
Alignment:
Q  8 catcatcaaatacatttaacaactcctagataacatca 45  Q
    ||||||||| ||||||||||||||| ||||||||||||    
T  236 catcatcaagtacatttaacaactcatagataacatca 273  T

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Target: scaffold0842 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0842
Description:

Target: scaffold0842; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 45
Target Start/End: Original strand, 5278 - 5315
Alignment:
Q  8 catcatcaaatacatttaacaactcctagataacatca 45  Q
    ||||||||| ||||||||||||||| ||||||||||||    
T  5278 catcatcaagtacatttaacaactcatagataacatca 5315  T

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Target: scaffold0337 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0337
Description:

Target: scaffold0337; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 45
Target Start/End: Complemental strand, 10864 - 10827
Alignment:
Q  8 catcatcaaatacatttaacaactcctagataacatca 45  Q
    ||||||||| ||||||||||||||| ||||||||||||    
T  10864 catcatcaagtacatttaacaactcatagataacatca 10827  T

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Target: scaffold0026 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 45
Target Start/End: Original strand, 109637 - 109674
Alignment:
Q  8 catcatcaaatacatttaacaactcctagataacatca 45  Q
    ||||||||| ||||||||||||||| ||||||||||||    
T  109637 catcatcaagtacatttaacaactcatagataacatca 109674  T

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Target: scaffold0012 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 45
Target Start/End: Complemental strand, 224185 - 224148
Alignment:
Q  8 catcatcaaatacatttaacaactcctagataacatca 45  Q
    ||||||||| ||||||||||||||| ||||||||||||    
T  224185 catcatcaagtacatttaacaactcatagataacatca 224148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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