View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19240_low_15 (Length: 359)
Name: NF19240_low_15
Description: NF19240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19240_low_15 |
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| [»] scaffold0176 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 321; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 15 - 351
Target Start/End: Original strand, 38726333 - 38726669
Alignment:
| Q |
15 |
aatttacaccattatcaccaacaaatgaaacttttaaatcaattggaccaagtgatttaacatgcaacacgaccttatacattttaccttgttcaatgtt |
114 |
Q |
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| T |
38726333 |
aatttacaccattaacaccaacaaatgaaacttttaaatcaattggaccaagtgatttaacatgcaacacgaccttatacattttaccttgttcaatgtt |
38726432 |
T |
|
| Q |
115 |
catgccccaataaccaggattagagatgccaacaccgctacgcggacaagattttccttgacaaagaatatccatgcgtaacgcaactttattacgctca |
214 |
Q |
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| T |
38726433 |
catgccccaataaccaggattagagataccaacaccgctacgcggacaagattttccttgacaaagaatatccatgcgtaacgcaactttattacgctca |
38726532 |
T |
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| Q |
215 |
aaactagaggacatatcagttgatacagtaatggaagatttattctgatctccaataattgtccatggatctattctttgtgaatcattaaggccacgga |
314 |
Q |
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| T |
38726533 |
aaactagaggacatatcagttgatacagtaatggaagatttattctgatctccaataattgtccatggatctattctttgtgaatcattaaggccacgga |
38726632 |
T |
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| Q |
315 |
atcctgcttcgaagcctttatttttcacaggttctgc |
351 |
Q |
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| T |
38726633 |
atcctgcttcgaaacctttatttttcacaagttctgc |
38726669 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 115 - 240
Target Start/End: Complemental strand, 34208999 - 34208874
Alignment:
| Q |
115 |
catgccccaataaccaggattagagatgccaacaccgctacgcggacaagattttccttgacaaagaatatccatgcgtaacgcaactttattacgctca |
214 |
Q |
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| T |
34208999 |
catgccccaaaattcaggattggagataccaacaccaccaagtggacatgattgtccttgacaaagaacatctaaacgtaaagcaaccttattacgctca |
34208900 |
T |
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| Q |
215 |
aaactagaggacatatcagttgatac |
240 |
Q |
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| T |
34208899 |
aaacaagaggaacgatcagttgatac |
34208874 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 115 - 284
Target Start/End: Complemental strand, 34168789 - 34168623
Alignment:
| Q |
115 |
catgccccaataaccaggattagagatgccaacaccgctacgcggacaagattttccttgacaaagaatatccatgcgtaacgcaactttattacgctca |
214 |
Q |
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| T |
34168789 |
catgccccaaaatccaggattggagataccaacaccaccaagtggacatgattgtccttgacaaagaacatctgaacgtaaagcaaccttattacactca |
34168690 |
T |
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| Q |
215 |
aaactagaggacatatcagttgatacagtaatggaagatttattctgatctccaataattgtccatggat |
284 |
Q |
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| T |
34168689 |
aaacaagatgaacgatcagttgatacgataatcgatgatgaatt---atctccaataattatccatggat |
34168623 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 37 - 115
Target Start/End: Original strand, 34153610 - 34153688
Alignment:
| Q |
37 |
aaatgaaacttttaaatcaattggaccaagtgatttaacatgcaacacgaccttatacattttaccttgttcaatgttc |
115 |
Q |
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| T |
34153610 |
aaatgaaacttgtaaattaataggaccaagtgatctaacatagaacaccactttatactttttcccttgctcaatgttc |
34153688 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 37 - 115
Target Start/End: Complemental strand, 34168957 - 34168879
Alignment:
| Q |
37 |
aaatgaaacttttaaatcaattggaccaagtgatttaacatgcaacacgaccttatacattttaccttgttcaatgttc |
115 |
Q |
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| T |
34168957 |
aaatgaaacttgtaaattaataggaccaagtgatctaacatagaacaccactttatactttttcccttgctcaatgttc |
34168879 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 37 - 115
Target Start/End: Complemental strand, 34209167 - 34209089
Alignment:
| Q |
37 |
aaatgaaacttttaaatcaattggaccaagtgatttaacatgcaacacgaccttatacattttaccttgttcaatgttc |
115 |
Q |
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| T |
34209167 |
aaatgaaacttgtaaattaataggaccaagtgatctaacatagaacaccactttatactttttcccttgctcaatgttc |
34209089 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 128 - 284
Target Start/End: Original strand, 34155129 - 34155282
Alignment:
| Q |
128 |
ccaggattagagatgccaacaccgctacgcggacaagattttccttgacaaagaatatccatgcgtaacgcaactttattacgctcaaaactagaggaca |
227 |
Q |
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| T |
34155129 |
ccaggattggagataccaacaccaccaagtggacatgattgtccttgacaaagaacatctgaacgtaaagcaaccttattacactcaaaacaagatgaac |
34155228 |
T |
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| Q |
228 |
tatcagttgatacagtaatggaagatttattctgatctccaataattgtccatggat |
284 |
Q |
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| T |
34155229 |
gatcagttgatacgataatcgatgatgaatt---atctccaataattatccatggat |
34155282 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0176 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: scaffold0176
Description:
Target: scaffold0176; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 115 - 240
Target Start/End: Complemental strand, 29111 - 28986
Alignment:
| Q |
115 |
catgccccaataaccaggattagagatgccaacaccgctacgcggacaagattttccttgacaaagaatatccatgcgtaacgcaactttattacgctca |
214 |
Q |
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|||||||||| | |||||||| ||||| |||||||| | | | ||||| |||| |||||||||||||| ||| ||||| ||||| ||||||| |||| |
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| T |
29111 |
catgccccaaaatccaggattggagataccaacaccaccaagtggacatgattgtccttgacaaagaacatctnaacgtaaagcaaccttattacnctca |
29012 |
T |
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| Q |
215 |
aaactagaggacatatcagttgatac |
240 |
Q |
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|||| ||| || |||||||||||| |
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| T |
29011 |
aaacaagatgaacgatcagttgatac |
28986 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0176; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 37 - 115
Target Start/End: Complemental strand, 29279 - 29201
Alignment:
| Q |
37 |
aaatgaaacttttaaatcaattggaccaagtgatttaacatgcaacacgaccttatacattttaccttgttcaatgttc |
115 |
Q |
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||||||||||| ||||| ||| |||||||||||| |||||| ||||| || |||||| |||| ||||| ||||||||| |
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| T |
29279 |
aaatgaaacttgtaaattaataggaccaagtgatctaacatagaacaccactttatactttttcccttgctcaatgttc |
29201 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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