View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19240_low_2 (Length: 552)

Name: NF19240_low_2
Description: NF19240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19240_low_2
NF19240_low_2
[»] scaffold0009 (2 HSPs)
scaffold0009 (196-534)||(101469-101808)
scaffold0009 (21-99)||(101298-101382)
[»] chr1 (1 HSPs)
chr1 (321-451)||(45784912-45785042)
[»] chr7 (8 HSPs)
chr7 (462-532)||(10281348-10281418)
chr7 (324-436)||(10281461-10281577)
chr7 (97-171)||(47544116-47544190)
chr7 (199-250)||(47528128-47528179)
chr7 (323-404)||(28638543-28638624)
chr7 (185-253)||(47544247-47544316)
chr7 (321-396)||(503625-503700)
chr7 (481-529)||(48014451-48014499)
[»] scaffold0117 (1 HSPs)
scaffold0117 (462-531)||(13593-13662)
[»] scaffold0019 (1 HSPs)
scaffold0019 (326-451)||(64236-64361)


Alignment Details
Target: scaffold0009 (Bit Score: 268; Significance: 1e-149; HSPs: 2)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 196 - 534
Target Start/End: Original strand, 101469 - 101808
Alignment:
Q  196 tcttaatgcctaatgacattgcctatcaggatgctttctaatagggaatcggctaaactctcacgaaatagaaagcaaggtcgggt-gttgatgaatgct 294  Q
    |||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||  | |||||||||||||    
T  101469 tcttaacgcctaatgacattgcctctcaggatgctttctaatagggaatcggctaaactctcaggaaatagaaagcaagctcgtattgttgatgaatgct 101568  T
Q  295 ataaatctttggggctataaatcatttggatatgaatgctaacttgggtggatttgcatctgctttgattaagaatccagtttgggttatgaacgtggtt 394  Q
    ||||||||||||||| ||||||||||||||||||||||||| ||  |||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  101569 ataaatctttggggccataaatcatttggatatgaatgctagctatggtggatttgcatctgctttgattaagaatcctgtttgggttatgaacgtggtt 101668  T
Q  395 cctgtcgaggttaaggttgatacacttggagcaatatatgaaaggggattgattggatgataccataattgaaccatttatcacatattaaacaatattc 494  Q
    | ||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||    
T  101669 cttgtcgaggttaaggttgatactcttcgagcaatatatgaaaggggattgattggatgataccatgattgaacaatttatcacatattaaacaatattc 101768  T
Q  495 aatgttatatttccattgtgatttccttgattaattaaac 534  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  101769 aatgttatatttccattgtgatttccttgattaattaaac 101808  T

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Target: scaffold0009; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 21 - 99
Target Start/End: Original strand, 101298 - 101382
Alignment:
Q  21 agacatttaatccttttgaacttggaaatatgttgttac------gtcaacgacaagtggatccttaggcgaagaggaggcttat 99  Q
    |||||| | |||||| ||||||||||||  |||||||||      |||||||||||||||||||| ||||||||| |||||||||    
T  101298 agacatctgatccttctgaacttggaaacctgttgttacaaccaggtcaacgacaagtggatcctcaggcgaagatgaggcttat 101382  T

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Target: chr1 (Bit Score: 91; Significance: 8e-44; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 321 - 451
Target Start/End: Complemental strand, 45785042 - 45784912
Alignment:
Q  321 tggatatgaatgctaacttgggtggatttgcatctgctttgattaagaatccagtttgggttatgaacgtggttcctgtcgaggttaaggttgatacact 420  Q
    ||||||||||||||||||||||||||||||||||||||||  |||||||||| |||||||||||||| |||||||||||| ||| ||||||||| || ||    
T  45785042 tggatatgaatgctaacttgggtggatttgcatctgctttagttaagaatcctgtttgggttatgaatgtggttcctgtccaggctaaggttgacaccct 45784943  T
Q  421 tggagcaatatatgaaaggggattgattgga 451  Q
    ||| |||||||||||||||||| ||||||||    
T  45784942 tggggcaatatatgaaaggggactgattgga 45784912  T

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Target: chr7 (Bit Score: 67; Significance: 2e-29; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 462 - 532
Target Start/End: Complemental strand, 10281418 - 10281348
Alignment:
Q  462 attgaaccatttatcacatattaaacaatattcaatgttatatttccattgtgatttccttgattaattaa 532  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  10281418 attgaaccatttatcacatattaaacaatattcaatgttatattttcattgtgatttccttgattaattaa 10281348  T

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Target: chr7; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 324 - 436
Target Start/End: Complemental strand, 10281577 - 10281461
Alignment:
Q  324 atatgaatgctaacttgggtggatttgcatctgctttgattaagaatccagtttgggttat----gaacgtggttcctgtcgaggttaaggttgatacac 419  Q
    |||||||||||||||  ||||||||||||| ||||||||||||||| |  |||||||||||    |||||||||||||||| | | ||||||||||||||    
T  10281577 atatgaatgctaactacggtggatttgcatttgctttgattaagaaccatgtttgggttatatatgaacgtggttcctgtccatgctaaggttgatacac 10281478  T
Q  420 ttggagcaatatatgaa 436  Q
    |||||||||||||||||    
T  10281477 ttggagcaatatatgaa 10281461  T

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Target: chr7; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 97 - 171
Target Start/End: Original strand, 47544116 - 47544190
Alignment:
Q  97 tatgaatggagacaataacgcttctaatgcaaaacgagttaagaggtaacaatattctctgagttcaatatgttt 171  Q
    ||||||| ||||||||||| ||||  ||||||||||| ||||||||||||||||||||  |||||||||||||||    
T  47544116 tatgaatagagacaataacccttccgatgcaaaacgacttaagaggtaacaatattctaggagttcaatatgttt 47544190  T

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Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 199 - 250
Target Start/End: Original strand, 47528128 - 47528179
Alignment:
Q  199 taatgcctaatgacattgcctatcaggatgctttctaatagggaatcggcta 250  Q
    ||||||||||||||||||||| |||||||||| |||||||||||||| ||||    
T  47528128 taatgcctaatgacattgcctttcaggatgctctctaatagggaatcagcta 47528179  T

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Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 323 - 404
Target Start/End: Complemental strand, 28638624 - 28638543
Alignment:
Q  323 gatatgaatgctaacttgggtggatttgcatctgctttgattaagaatccagtttgggttatgaacgtggttcctgtcgagg 404  Q
    |||||||||||| ||||||| ||||||||| ||||  ||||| |  ||||||||||||| ||||| || ||||| |||||||    
T  28638624 gatatgaatgcttacttgggaggatttgcagctgcaatgattgatgatccagtttgggtcatgaatgttgttccggtcgagg 28638543  T

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Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 185 - 253
Target Start/End: Original strand, 47544247 - 47544316
Alignment:
Q  185 tccaaacatggtcttaatgcctaatgacattgcc-tatcaggatgctttctaatagggaatcggctaaac 253  Q
    |||||||||||||||||||||| ||||||||||| | ||||||||||    ||||||||||| |||||||    
T  47544247 tccaaacatggtcttaatgccttatgacattgccttttcaggatgctccaaaatagggaatcagctaaac 47544316  T

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Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 321 - 396
Target Start/End: Complemental strand, 503700 - 503625
Alignment:
Q  321 tggatatgaatgctaacttgggtggatttgcatctgctttgattaagaatccagtttgggttatgaacgtggttcc 396  Q
    ||||||||||||||  ||| |||||||||||| |||| ||| | ||  ||||||||||||||||||| || |||||    
T  503700 tggatatgaatgctggctttggtggatttgcagctgcattggtgaaatatccagtttgggttatgaatgttgttcc 503625  T

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Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 481 - 529
Target Start/End: Complemental strand, 48014499 - 48014451
Alignment:
Q  481 attaaacaatattcaatgttatatttccattgtgatttccttgattaat 529  Q
    |||||||||||||||||   ||||||| |||||||||| ||||||||||    
T  48014499 attaaacaatattcaataaaatatttcgattgtgattttcttgattaat 48014451  T

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Target: scaffold0117 (Bit Score: 58; Significance: 4e-24; HSPs: 1)
Name: scaffold0117
Description:

Target: scaffold0117; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 462 - 531
Target Start/End: Complemental strand, 13662 - 13593
Alignment:
Q  462 attgaaccatttatcacatattaaacaatattcaatgttatatttccattgtgatttccttgattaatta 531  Q
    |||||||||||||||||||||||| |||||||||||||||||||||| |||| |||||||||||||||||    
T  13662 attgaaccatttatcacatattaatcaatattcaatgttatatttccgttgtaatttccttgattaatta 13593  T

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Target: scaffold0019 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 326 - 451
Target Start/End: Complemental strand, 64361 - 64236
Alignment:
Q  326 atgaatgctaacttgggtggatttgcatctgctttgattaagaatccagtttgggttatgaacgtggttcctgtcgaggttaaggttgatacacttggag 425  Q
    ||||||||| | ||||||||||||||| || |  |  ||||  ||||  ||||||||||||| || |||||| |  | | ||| ||||||||||||||||    
T  64361 atgaatgcttatttgggtggatttgcagcttcacttgttaaatatcctatttgggttatgaatgttgttcctattcaagctaaagttgatacacttggag 64262  T
Q  426 caatatatgaaaggggattgattgga 451  Q
    ||||||||||||| || |||||||||    
T  64261 caatatatgaaagagggttgattgga 64236  T

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