View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19240_low_22 (Length: 298)
Name: NF19240_low_22
Description: NF19240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19240_low_22 |
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Alignment Details
Target: chr5 (Bit Score: 133; Significance: 4e-69; HSPs: 9)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 29 - 165
Target Start/End: Complemental strand, 30478773 - 30478637
Alignment:
| Q |
29 |
aaattcttgtttcttatctgttcagtaaatgaacttgctatgaataattcatgacaataattaggatctgacataaaacaaagttaatagaattctcaat |
128 |
Q |
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| T |
30478773 |
aaattcttgtttcttatctgttcagtaaatgaacttgctatgaataattcatgacaataattaggatctgacataaaacaaagttaatagaattctcaat |
30478674 |
T |
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| Q |
129 |
ctctcaaatctctgaaatacatattaattgaacgatt |
165 |
Q |
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| T |
30478673 |
ctctcaaatctctgaaatacttattaattgaacgatt |
30478637 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 71 - 281
Target Start/End: Complemental strand, 30055469 - 30055257
Alignment:
| Q |
71 |
aataattcatgacaataattaggatctgacataaaacaaagttaatagaattctcaatctctcaaatctctgaaatacatattaattgaacgattttaca |
170 |
Q |
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| T |
30055469 |
aataattcgtgataagaactaggattcgacataaaacaaagtcaatagaattcttaatctctcaaa-ctctgaaatgcttattattttaatgattctagc |
30055371 |
T |
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| Q |
171 |
---agcaaatttgattgatttacttctttca-acgttgaacaaatgaagggtggttgtgtctgagtttaattcatttgatgtgaaaatgggaattattag |
266 |
Q |
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| T |
30055370 |
tagagcaaagt-gattgatttacttcttgcagacgttgcacaaatgaagggtggttgtgcctgagtcgaacacatctgatgtgaaaatgggcaatattag |
30055272 |
T |
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| Q |
267 |
tgaatatacactatc |
281 |
Q |
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| T |
30055271 |
tgaatatacactatc |
30055257 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 71 - 281
Target Start/End: Original strand, 30681756 - 30681968
Alignment:
| Q |
71 |
aataattcatgacaataattaggatctgacataaaacaaagttaatagaattctcaatctctcaaatctctgaaatacatattaattgaacgattttaca |
170 |
Q |
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| T |
30681756 |
aataattcgtgataagaactaggattcgacataaaacaaagtcaatagaattctcgatctctcaaa-ctctgaaatgcttattattttaatgattctagc |
30681854 |
T |
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| Q |
171 |
---agcaaatttgattgatttacttctttca-acgttgaacaaatgaagggtggttgtgtctgagtttaattcatttgatgtgaaaatgggaattattag |
266 |
Q |
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| T |
30681855 |
tagagcaaagtgg-ttgatttactgcttgcagacgttgcacaaatgaagggtggttgtgcctgagtcgaacacatctgatgtgaaaattggaaatattag |
30681953 |
T |
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| Q |
267 |
tgaatatacactatc |
281 |
Q |
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| T |
30681954 |
tgaatatacactatc |
30681968 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 211 - 281
Target Start/End: Original strand, 30718150 - 30718220
Alignment:
| Q |
211 |
tgaagggtggttgtgtctgagtttaattcatttgatgtgaaaatgggaattattagtgaatatacactatc |
281 |
Q |
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| T |
30718150 |
tgaagggtggttgtgcatgagtcgaacgcatctgatgtgaaaatgggaaatattagtgaatatacactatc |
30718220 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 71 - 146
Target Start/End: Original strand, 30718011 - 30718085
Alignment:
| Q |
71 |
aataattcatgacaataattaggatctgacataaaacaaagttaatagaattctcaatctctcaaatctctgaaat |
146 |
Q |
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| T |
30718011 |
aatatttcatgataagaactaggattcgacataaaacaaagtcaatagaattctcgatctctcaaa-ctctgaaat |
30718085 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 29 - 74
Target Start/End: Original strand, 30681684 - 30681729
Alignment:
| Q |
29 |
aaattcttgtttcttatctgttcagtaaatgaacttgctatgaata |
74 |
Q |
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| T |
30681684 |
aaattcttgtttcttatctgttcagtaagtgaacttgttataaata |
30681729 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 29 - 74
Target Start/End: Original strand, 30717941 - 30717986
Alignment:
| Q |
29 |
aaattcttgtttcttatctgttcagtaaatgaacttgctatgaata |
74 |
Q |
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|||||||||||||||||||||||||||| |||||||| ||| |||| |
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| T |
30717941 |
aaattcttgtttcttatctgttcagtaagtgaacttgttataaata |
30717986 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 29 - 74
Target Start/End: Complemental strand, 30745314 - 30745269
Alignment:
| Q |
29 |
aaattcttgtttcttatctgttcagtaaatgaacttgctatgaata |
74 |
Q |
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|||||||||||||||||||||||||||| |||||||| ||| |||| |
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| T |
30745314 |
aaattcttgtttcttatctgttcagtaagtgaacttgttataaata |
30745269 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 29 - 65
Target Start/End: Complemental strand, 30055541 - 30055505
Alignment:
| Q |
29 |
aaattcttgtttcttatctgttcagtaaatgaacttg |
65 |
Q |
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| T |
30055541 |
aaattcttgtttcttatctgttcagtaagtgaacttg |
30055505 |
T |
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