View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19240_low_24 (Length: 295)

Name: NF19240_low_24
Description: NF19240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19240_low_24
NF19240_low_24
[»] chr5 (5 HSPs)
chr5 (8-287)||(32796191-32796470)
chr5 (136-287)||(19667910-19668061)
chr5 (26-132)||(19670641-19670747)
chr5 (26-132)||(32795582-32795688)
chr5 (61-126)||(26896586-26896651)
[»] chr1 (6 HSPs)
chr1 (136-284)||(22827697-22827845)
chr1 (45-132)||(22840959-22841046)
chr1 (45-132)||(22827079-22827166)
chr1 (48-132)||(24272740-24272824)
chr1 (70-132)||(22826684-22826746)
chr1 (32-132)||(24284800-24284900)
[»] chr6 (14 HSPs)
chr6 (152-284)||(2922512-2922644)
chr6 (136-284)||(27413936-27414085)
chr6 (26-132)||(11678811-11678917)
chr6 (45-132)||(2921894-2921981)
chr6 (45-132)||(13558027-13558114)
chr6 (69-132)||(13556056-13556119)
chr6 (60-133)||(16403529-16403601)
chr6 (30-101)||(27340686-27340758)
chr6 (30-101)||(27401426-27401498)
chr6 (51-132)||(2923210-2923292)
chr6 (26-73)||(11676986-11677033)
chr6 (41-132)||(14721695-14721785)
chr6 (49-132)||(16910148-16910231)
chr6 (63-132)||(11677130-11677199)
[»] scaffold0003 (1 HSPs)
scaffold0003 (136-284)||(79040-79189)
[»] chr7 (5 HSPs)
chr7 (45-132)||(7961767-7961854)
chr7 (37-132)||(11269939-11270034)
chr7 (42-112)||(1103145-1103215)
chr7 (48-132)||(1716681-1716765)
chr7 (40-119)||(1345093-1345171)
[»] chr2 (4 HSPs)
chr2 (41-132)||(37965532-37965624)
chr2 (51-132)||(10128497-10128578)
chr2 (41-131)||(8761225-8761316)
chr2 (45-102)||(15140798-15140855)
[»] scaffold0007 (1 HSPs)
scaffold0007 (63-132)||(260217-260286)
[»] chr4 (9 HSPs)
chr4 (59-132)||(27272575-27272648)
chr4 (59-124)||(53469713-53469778)
chr4 (45-132)||(10395953-10396040)
chr4 (41-132)||(29235173-29235265)
chr4 (41-100)||(13816929-13816988)
chr4 (41-131)||(53472595-53472683)
chr4 (37-109)||(50887474-50887545)
chr4 (42-132)||(32015150-32015240)
chr4 (61-119)||(21206356-21206414)
[»] scaffold0065 (1 HSPs)
scaffold0065 (26-110)||(34666-34750)
[»] chr3 (4 HSPs)
chr3 (37-132)||(25889606-25889701)
chr3 (42-132)||(31141391-31141481)
chr3 (41-124)||(30046404-30046489)
chr3 (30-81)||(25578999-25579051)
[»] chr8 (1 HSPs)
chr8 (92-132)||(42001905-42001945)


Alignment Details
Target: chr5 (Bit Score: 212; Significance: 1e-116; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 8 - 287
Target Start/End: Complemental strand, 32796470 - 32796191
Alignment:
Q  8 actatatgttggtgtttttatcaataataatgagaaaatgtctcacatcgaataatatgaagaaatatgcaaagacttagtcatataaataaaagccttg 107  Q
    |||| |||||||||||| |||||||||||||||||||||||| || |||| ||||||||||||||||||||||| |||||||||||||||||||||||||    
T  32796470 actacatgttggtgtttatatcaataataatgagaaaatgtcccagatcggataatatgaagaaatatgcaaaggcttagtcatataaataaaagccttg 32796371  T
Q  108 tgtgtcagtattacttgcaccaataaatctccaatacttgaatcttactcgcctagacattcccctcagcacaaacaaactcgcccaattcatgcagaat 207  Q
    ||||| |||||| ||||||| ||||||||||||| |||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||    
T  32796370 tgtgttagtattccttgcacaaataaatctccaaaacttgaatcttactcgcccagacattgccctcagcacaaacaaactcgcccaattcatgcagaat 32796271  T
Q  208 cccagaacggcgcattggactgcacttaaaagagtgctcagacacttggcgggttcctgtgacaaaggcgtcttcatctc 287  Q
    |||||||| ||||||||||||||||| |||||||||||||||  |||||||||||||||| |||||||||||||||||||    
T  32796270 cccagaacagcgcattggactgcactcaaaagagtgctcagatgcttggcgggttcctgtaacaaaggcgtcttcatctc 32796191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 136 - 287
Target Start/End: Original strand, 19667910 - 19668061
Alignment:
Q  136 ctccaatacttgaatcttactcgcctagacattcccctcagcacaaacaaactcgcccaattcatgcagaatcccagaacggcgcattggactgcactta 235  Q
    ||||||||||||| ||||||||||| | ||||| |  ||||||||| |||||  |||||||||||||||||||||||||||||||||||||| ||| | |    
T  19667910 ctccaatacttgagtcttactcgcccatacatttcattcagcacaagcaaacctgcccaattcatgcagaatcccagaacggcgcattggaccgcaatca 19668009  T
Q  236 aaagagtgctcagacacttggcgggttcctgtgacaaaggcgtcttcatctc 287  Q
    ||||||| |||||| |||||||||||||||||||||||||||||||||||||    
T  19668010 aaagagttctcagatacttggcgggttcctgtgacaaaggcgtcttcatctc 19668061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 26 - 132
Target Start/End: Original strand, 19670641 - 19670747
Alignment:
Q  26 tatcaataataatgagaaaatgtctcacatcgaataatatgaagaaatatgcaaagacttagtcatataaataaaagccttgtgtgtcagtattacttgc 125  Q
    ||||||||||||||||||||||||||||||   ||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||     
T  19670641 tatcaataataatgagaaaatgtctcacataagataatatgaagaaatatgcaaaggcttagtcatataaataaaagccttgtgtgttagtattacttgt 19670740  T
Q  126 accaata 132  Q
    |||||||    
T  19670741 accaata 19670747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 26 - 132
Target Start/End: Complemental strand, 32795688 - 32795582
Alignment:
Q  26 tatcaataataatgagaaaatgtctcacatcgaataatatgaagaaatatgcaaagacttagtcatataaataaaagccttgtgtgtcagtattacttgc 125  Q
    |||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||| |||||||| |||| ||||||||||||||||     
T  32795688 tatcaataataatgagaaaatgtcccacatcggataatatgaagaaatatgcaaagacttagtcatattaataaaagtcttgcgtgtcagtattacttgt 32795589  T
Q  126 accaata 132  Q
    |||||||    
T  32795588 accaata 32795582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 61 - 126
Target Start/End: Original strand, 26896586 - 26896651
Alignment:
Q  61 aatatgaagaaatatgcaaagacttagtcatataaataaaagccttgtgtgtcagtattacttgca 126  Q
    |||| |||||||||||||||||||| | ||||||||||||  | |||||||| |||||| ||||||    
T  26896586 aataggaagaaatatgcaaagacttggccatataaataaagacattgtgtgttagtatttcttgca 26896651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 101; Significance: 4e-50; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 136 - 284
Target Start/End: Complemental strand, 22827845 - 22827697
Alignment:
Q  136 ctccaatacttgaatcttactcgcctagacattcccctcagcacaaacaaactcgcccaattcatgcagaatcccagaacggcgcattggactgcactta 235  Q
    ||||||||||||| ||||||| ||| ||||||| || ||||||||||||||||||| ||||||||||| || |||||||||||||||||||||||||| |    
T  22827845 ctccaatacttgagtcttacttgcccagacattgccttcagcacaaacaaactcgcgcaattcatgcaaaaccccagaacggcgcattggactgcactca 22827746  T
Q  236 aaagagtgctcagacacttggcgggttcctgtgacaaaggcgtcttcat 284  Q
    |||||||||||| | |||||||||||||||||||||||||| |||||||    
T  22827745 aaagagtgctcaaatacttggcgggttcctgtgacaaaggcatcttcat 22827697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 45 - 132
Target Start/End: Original strand, 22840959 - 22841046
Alignment:
Q  45 atgtctcacatcgaataatatgaagaaatatgcaaagacttagtcatataaataaaagccttgtgtgtcagtattacttgcaccaata 132  Q
    ||||| ||||||| ||||||||||||||||||||||| ||| |||||| ||||||||||||||||||| |||||| ||||||||||||    
T  22840959 atgtcccacatcggataatatgaagaaatatgcaaaggcttggtcataaaaataaaagccttgtgtgttagtatttcttgcaccaata 22841046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 45 - 132
Target Start/End: Complemental strand, 22827166 - 22827079
Alignment:
Q  45 atgtctcacatcgaataatatgaagaaatatgcaaagacttagtcatataaataaaagccttgtgtgtcagtattacttgcaccaata 132  Q
    ||||| ||||||| |||||||||||||||||||||||  || ||||||||||||||||||||||||||   |||| ||||||||||||    
T  22827166 atgtcccacatcggataatatgaagaaatatgcaaaggtttggtcatataaataaaagccttgtgtgttcatatttcttgcaccaata 22827079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 48 - 132
Target Start/End: Original strand, 24272740 - 24272824
Alignment:
Q  48 tctcacatcgaataatatgaagaaatatgcaaagacttagtcatataaataaaagccttgtgtgtcagtattacttgcaccaata 132  Q
    |||||||||| | | |||||||||||||||||||||||    ||||| ||||| ||||||||||| |||||| ||||||||||||    
T  24272740 tctcacatcgtagagtatgaagaaatatgcaaagacttgacaatatatataaaggccttgtgtgttagtatttcttgcaccaata 24272824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 70 - 132
Target Start/End: Complemental strand, 22826746 - 22826684
Alignment:
Q  70 aaatatgcaaagacttagtcatataaataaaagccttgtgtgtcagtattacttgcaccaata 132  Q
    |||| ||||||| ||| |||||||||||||||||||| ||||| |||||| ||||||||||||    
T  22826746 aaatctgcaaaggcttggtcatataaataaaagccttatgtgttagtatttcttgcaccaata 22826684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 32 - 132
Target Start/End: Original strand, 24284800 - 24284900
Alignment:
Q  32 taataatgagaaaatgtctcacatcgaataatatgaagaaatatgcaaagacttagtcatataaataaaagccttgtgtgtcagtattacttgcaccaat 131  Q
    ||||| || ||||| ||| ||||||  | |||||||| ||||||||||| | || |  ||||||||||| || |||||||| | |||| |||||||||||    
T  24284800 taatattgggaaaaagtcccacatcagagaatatgaacaaatatgcaaatatttggctatataaataaaggcattgtgtgttaatatttcttgcaccaat 24284899  T
Q  132 a 132  Q
    |    
T  24284900 a 24284900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 89; Significance: 6e-43; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 152 - 284
Target Start/End: Complemental strand, 2922644 - 2922512
Alignment:
Q  152 ttactcgcctagacattcccctcagcacaaacaaactcgcccaattcatgcagaatcccagaacggcgcattggactgcacttaaaagagtgctcagaca 251  Q
    ||||||||||||||||| || ||| ||||||||||||| ||||||||||||| || |||| ||||||||||||||||||||| ||||||||||||||| |    
T  2922644 ttactcgcctagacattgccttcatcacaaacaaactcacccaattcatgcaaaaccccataacggcgcattggactgcactcaaaagagtgctcagata 2922545  T
Q  252 cttggcgggttcctgtgacaaaggcgtcttcat 284  Q
    |||||| ||||||| ||||||||||||||||||    
T  2922544 cttggcaggttcctatgacaaaggcgtcttcat 2922512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 136 - 284
Target Start/End: Complemental strand, 27414085 - 27413936
Alignment:
Q  136 ctccaatacttgaatcttactcgcctagacattcccctcagcacaaacaaactcgcccaattcatgcagaatcccagaacggcgcattggactgcactta 235  Q
    |||||| ||||||  ||||||| |||||||||| || ||| ||||||||||||||||||||||||||| ||  ||||||||| | ||||||||||||| |    
T  27414085 ctccaacacttgagccttactctcctagacattgccttcaacacaaacaaactcgcccaattcatgcaaaactccagaacggtgtattggactgcactca 27413986  T
Q  236 aaagagtgctcagacac-ttggcgggttcctgtgacaaaggcgtcttcat 284  Q
    |||||||||||  | || ||||||||||||||||||||||| ||||||||    
T  27413985 aaagagtgctcctatactttggcgggttcctgtgacaaaggtgtcttcat 27413936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 26 - 132
Target Start/End: Original strand, 11678811 - 11678917
Alignment:
Q  26 tatcaataataatgagaaaatgtctcacatcgaataatatgaagaaatatgcaaagacttagtcatataaataaaagccttgtgtgtcagtattacttgc 125  Q
    |||||||||||||||||||||||| ||||||| ||||||||||||||||||||||| ||| ||||| |||||||||  ||||||||| |||||| ||  |    
T  11678811 tatcaataataatgagaaaatgtcccacatcggataatatgaagaaatatgcaaaggcttggtcatgtaaataaaactcttgtgtgttagtatttctaac 11678910  T
Q  126 accaata 132  Q
    |||||||    
T  11678911 accaata 11678917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 45 - 132
Target Start/End: Complemental strand, 2921981 - 2921894
Alignment:
Q  45 atgtctcacatcgaataatatgaagaaatatgcaaagacttagtcatataaataaaagccttgtgtgtcagtattacttgcaccaata 132  Q
    ||||||||||||| ||||||||||||||||||||| ||||| || ||||||||||||| ||| ||||| |||||| ||||||||||||    
T  2921981 atgtctcacatcggataatatgaagaaatatgcaatgacttggtaatataaataaaagtcttatgtgttagtatttcttgcaccaata 2921894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 45 - 132
Target Start/End: Complemental strand, 13558114 - 13558027
Alignment:
Q  45 atgtctcacatcgaataatatgaagaaatatgcaaagacttagtcatataaataaaagccttgtgtgtcagtattacttgcaccaata 132  Q
    ||||| ||||||| ||||||||||||||||||||||| ||| ||||||||||||||||| |||||||| |||||| | ||||||||||    
T  13558114 atgtcccacatcggataatatgaagaaatatgcaaaggcttggtcatataaataaaagcattgtgtgttagtatttcatgcaccaata 13558027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 69 - 132
Target Start/End: Complemental strand, 13556119 - 13556056
Alignment:
Q  69 gaaatatgcaaagacttagtcatataaataaaagccttgtgtgtcagtattacttgcaccaata 132  Q
    ||||||||||||| ||| |||||||||||||||||||||||||| |||||| ||||||||||||    
T  13556119 gaaatatgcaaaggcttggtcatataaataaaagccttgtgtgttagtatttcttgcaccaata 13556056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 60 - 133
Target Start/End: Original strand, 16403529 - 16403601
Alignment:
Q  60 taatatgaagaaatatgcaaagacttagtcatataaataaaagccttgtgtgtcagtattacttgcaccaataa 133  Q
    |||||||||||||||||||| |||||||||||||||||||||| |||||||||   ||||| ||||||||||||    
T  16403529 taatatgaagaaatatgcaa-gacttagtcatataaataaaagtcttgtgtgtttatattatttgcaccaataa 16403601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 30 - 101
Target Start/End: Complemental strand, 27340758 - 27340686
Alignment:
Q  30 aataataatgagaa-aatgtctcacatcgaataatatgaagaaatatgcaaagacttagtcatataaataaaa 101  Q
    ||||||||| |||| |||||| ||||||| ||||||||||||||||||||||| ||| |||||||||||||||    
T  27340758 aataataattagaataatgtcccacatcggataatatgaagaaatatgcaaaggcttggtcatataaataaaa 27340686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 30 - 101
Target Start/End: Complemental strand, 27401498 - 27401426
Alignment:
Q  30 aataataatgagaa-aatgtctcacatcgaataatatgaagaaatatgcaaagacttagtcatataaataaaa 101  Q
    ||||||||| |||| |||||| ||||||| ||||||||||||||||||||||| ||| |||||||||||||||    
T  27401498 aataataattagaataatgtcccacatcggataatatgaagaaatatgcaaaggcttggtcatataaataaaa 27401426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 51 - 132
Target Start/End: Complemental strand, 2923292 - 2923210
Alignment:
Q  51 cacatcgaataatatgaagaaatatgcaaa-gacttagtcatataaataaaagccttgtgtgtcagtattacttgcaccaata 132  Q
    ||||||| |||||||||||||||||||||| | ||| |||||||||||||||| ||||||||| |||| | ||||||| ||||    
T  2923292 cacatcggataatatgaagaaatatgcaaaaggcttggtcatataaataaaagtcttgtgtgttagtacttcttgcactaata 2923210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 26 - 73
Target Start/End: Original strand, 11676986 - 11677033
Alignment:
Q  26 tatcaataataatgagaaaatgtctcacatcgaataatatgaagaaat 73  Q
    |||||||||||||  ||||||||||||||||| |||||||||||||||    
T  11676986 tatcaataataatttgaaaatgtctcacatcggataatatgaagaaat 11677033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 41 - 132
Target Start/End: Original strand, 14721695 - 14721785
Alignment:
Q  41 gaaaatgtctcacatcgaataatatgaagaaatatgcaaagacttagtcatataaataaaagccttgtgtgtcagtattacttgcaccaata 132  Q
    ||||||||| ||||||| | ||||  |||||||||||||||| || | | |||||||||||||||||| | | |||||| |||||| |||||    
T  14721695 gaaaatgtcccacatcggagaatagaaagaaatatgcaaaga-tttggcctataaataaaagccttgtttataagtatttcttgcagcaata 14721785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 49 - 132
Target Start/End: Complemental strand, 16910231 - 16910148
Alignment:
Q  49 ctcacatcgaataatatgaagaaatatgcaaagacttagtcatataaataaaagccttgtgtgtcagtattacttgcaccaata 132  Q
    ||||| ||| ||||||||||| ||||||||||||||| |   ||||||||||||  |||||||| ||||||  |||| ||||||    
T  16910231 ctcacgtcggataatatgaaggaatatgcaaagacttggcattataaataaaagtattgtgtgttagtatttgttgcgccaata 16910148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 63 - 132
Target Start/End: Original strand, 11677130 - 11677199
Alignment:
Q  63 tatgaagaaatatgcaaagacttagtcatataaataaaagccttgtgtgtcagtattacttgcaccaata 132  Q
    |||||||||||||||||||  ||  ||||||||||||||  ||||||||| |||||| ||  ||||||||    
T  11677130 tatgaagaaatatgcaaaggattgatcatataaataaaactcttgtgtgttagtatttctaacaccaata 11677199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 74; Significance: 6e-34; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 136 - 284
Target Start/End: Original strand, 79040 - 79189
Alignment:
Q  136 ctccaatacttgaatcttactcgcctagacattcccctcagcacaaacaaactcgcccaattcatgcagaatcccagaacggcgcattggactgcactta 235  Q
    |||||| ||||||  ||||||| |||||||||| || ||| ||||||||||||||||||||||||||| ||  ||||||||| | ||||||||||||| |    
T  79040 ctccaacacttgagccttactctcctagacattgccttcaacacaaacaaactcgcccaattcatgcaaaactccagaacggtgtattggactgcactca 79139  T
Q  236 aaagagtgctcagacac-ttggcgggttcctgtgacaaaggcgtcttcat 284  Q
    |||||||||||  | || ||||||||||||||||||||||| ||||||||    
T  79140 aaagagtgctcctatactttggcgggttcctgtgacaaaggtgtcttcat 79189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 60; Significance: 1e-25; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 45 - 132
Target Start/End: Original strand, 7961767 - 7961854
Alignment:
Q  45 atgtctcacatcgaataatatgaagaaatatgcaaagacttagtcatataaataaaagccttgtgtgtcagtattacttgcaccaata 132  Q
    ||||| ||||||| |||||||||||||||||||||||  || |||||||||||||||||||||||||| |||||| ||||||||||||    
T  7961767 atgtcccacatcgcataatatgaagaaatatgcaaaggtttggtcatataaataaaagccttgtgtgttagtatttcttgcaccaata 7961854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 37 - 132
Target Start/End: Original strand, 11269939 - 11270034
Alignment:
Q  37 atgagaaaatgtctcacatcgaataatatgaagaaatatgcaaagacttagtcatataaataaaagccttgtgtgtcagtattacttgcaccaata 132  Q
    ||||||||||||| ||||||| |||||||||||||||||  |||   || |||||||||||||||||||||||||| ||||||| |||||||||||    
T  11269939 atgagaaaatgtcccacatcggataatatgaagaaatataaaaaagtttggtcatataaataaaagccttgtgtgttagtattagttgcaccaata 11270034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 42 - 112
Target Start/End: Original strand, 1103145 - 1103215
Alignment:
Q  42 aaaatgtctcacatcgaataatatgaagaaatatgcaaagacttagtcatataaataaaagccttgtgtgt 112  Q
    |||| ||| ||||||| |||||||||||||||||| |||||||| | ||||||||||||||||||||||||    
T  1103145 aaaacgtcccacatcggataatatgaagaaatatgtaaagacttggccatataaataaaagccttgtgtgt 1103215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 48 - 132
Target Start/End: Complemental strand, 1716765 - 1716681
Alignment:
Q  48 tctcacatcgaataatatgaagaaatatgcaaagacttagtcatataaataaaagccttgtgtgtcagtattacttgcaccaata 132  Q
    |||||||||||| |||||||| ||||||| ||||||||   |||||||||||| | ||||||||| | |||| |||||| |||||    
T  1716765 tctcacatcgaagaatatgaaaaaatatgtaaagacttgaccatataaataaaggtcttgtgtgttaatatttcttgcatcaata 1716681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 40 - 119
Target Start/End: Original strand, 1345093 - 1345171
Alignment:
Q  40 agaaaatgtctcacatcgaataatatgaagaaatatgcaaagacttagtcatataaataaaagccttgtgtgtcagtatt 119  Q
    |||||| ||||||||||||| |||| |||||||||||  |||||||  |||||||||||||   ||||||||| ||||||    
T  1345093 agaaaaagtctcacatcgaagaataagaagaaatatg-taagacttgatcatataaataaagatcttgtgtgttagtatt 1345171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 57; Significance: 8e-24; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 41 - 132
Target Start/End: Complemental strand, 37965624 - 37965532
Alignment:
Q  41 gaaaatgtctcacatcgaataatatgaagaaatatgcaaagacttagtcatataaataaaag-ccttgtgtgtcagtattacttgcaccaata 132  Q
    ||||||||||||||||| ||||||||||||||||||||||||||| |  ||||||||||||| | |||||||| |||||| ||||||||||||    
T  37965624 gaaaatgtctcacatcggataatatgaagaaatatgcaaagacttggatatataaataaaagtctttgtgtgttagtatttcttgcaccaata 37965532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 51 - 132
Target Start/End: Original strand, 10128497 - 10128578
Alignment:
Q  51 cacatcgaataatatgaagaaatatgcaaagacttagtcatataaataaaagccttgtgtgtcagtattacttgcaccaata 132  Q
    ||||||| | |||||||||||||||| |||||||| |||||||||||||||| ||||||||| |||||| ||||||||||||    
T  10128497 cacatcggagaatatgaagaaatatggaaagacttggtcatataaataaaagtcttgtgtgttagtatttcttgcaccaata 10128578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 41 - 131
Target Start/End: Complemental strand, 8761316 - 8761225
Alignment:
Q  41 gaaaatgtctcacatcgaataatatgaagaaatatgcaaagacttag-tcatataaataaaagccttgtgtgtcagtattacttgcaccaat 131  Q
    ||||||||| ||||||  |||||||||||||||||||||| |||| | ||||||||||||||| ||||||||| |||||| |||||||||||    
T  8761316 gaaaatgtcccacatcagataatatgaagaaatatgcaaatactttggtcatataaataaaagtcttgtgtgttagtatttcttgcaccaat 8761225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 45 - 102
Target Start/End: Original strand, 15140798 - 15140855
Alignment:
Q  45 atgtctcacatcgaataatatgaagaaatatgcaaagacttagtcatataaataaaag 102  Q
    ||||| |||||||  ||| ||||||||||||| ||||| || ||||||||||||||||    
T  15140798 atgtcccacatcggttaaaatgaagaaatatgtaaagatttggtcatataaataaaag 15140855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 63 - 132
Target Start/End: Complemental strand, 260286 - 260217
Alignment:
Q  63 tatgaagaaatatgcaaagacttagtcatataaataaaagccttgtgtgtcagtattacttgcaccaata 132  Q
    |||||||||||||||||||||||||||| |||||||||| |||||||||| |||||| ||||||||||||    
T  260286 tatgaagaaatatgcaaagacttagtcaaataaataaaatccttgtgtgttagtatttcttgcaccaata 260217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 50; Significance: 1e-19; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 59 - 132
Target Start/End: Original strand, 27272575 - 27272648
Alignment:
Q  59 ataatatgaagaaatatgcaaagacttagtcatataaataaaagccttgtgtgtcagtattacttgcaccaata 132  Q
    |||||||||||||||||||||||  || |||||||||||||||| ||||||||| |||||| ||||||||||||    
T  27272575 ataatatgaagaaatatgcaaaggtttggtcatataaataaaagtcttgtgtgttagtatttcttgcaccaata 27272648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 59 - 124
Target Start/End: Complemental strand, 53469778 - 53469713
Alignment:
Q  59 ataatatgaagaaatatgcaaagacttagtcatataaataaaagccttgtgtgtcagtattacttg 124  Q
    ||||||||||||||||||||||||||| |||||||||||||||| ||||||||| |||||| ||||    
T  53469778 ataatatgaagaaatatgcaaagacttggtcatataaataaaagtcttgtgtgttagtatttcttg 53469713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 45 - 132
Target Start/End: Original strand, 10395953 - 10396040
Alignment:
Q  45 atgtctcacatcgaataatatgaagaaatatgcaaagacttagtcatataaataaaagccttgtgtgtcagtattacttgcaccaata 132  Q
    ||||||||||||  | || |||||||||||||||||||||  | |||||||||||||||||||||||| |||||| |||||| |||||    
T  10395953 atgtctcacatcagagaagatgaagaaatatgcaaagactcggccatataaataaaagccttgtgtgttagtatttcttgcatcaata 10396040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 41 - 132
Target Start/End: Complemental strand, 29235265 - 29235173
Alignment:
Q  41 gaaaatgtctcacatcgaataatatgaagaaatatgcaaagacttagtcatataaataaaagccttgtgtgtcagt-attacttgcaccaata 132  Q
    |||||| || ||||||| || ||||||| |||||||||||||||| | |||||||||||| ||||||||||| ||| ||| ||||||||||||    
T  29235265 gaaaatatcccacatcggattatatgaaaaaatatgcaaagacttggccatataaataaaggccttgtgtgttagtaatttcttgcaccaata 29235173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 41 - 100
Target Start/End: Original strand, 13816929 - 13816988
Alignment:
Q  41 gaaaatgtctcacatcgaataatatgaagaaatatgcaaagacttagtcatataaataaa 100  Q
    ||||| ||||||||||||| ||||||||||||||||| ||||||| ||||||||||||||    
T  13816929 gaaaaagtctcacatcgaagaatatgaagaaatatgcgaagacttggtcatataaataaa 13816988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 41 - 131
Target Start/End: Complemental strand, 53472683 - 53472595
Alignment:
Q  41 gaaaatgtctcacatcgaataatatgaagaaatatgcaaagacttagtcatataaataaaagccttgtgtgtcagtattacttgcaccaat 131  Q
    ||||||||  ||||||| |||||| |||||||||||||||||||| | ||||||||||||||  |||||||| |||||| | |||||||||    
T  53472683 gaaaatgttccacatcggataatacgaagaaatatgcaaagactt-gccatataaataaaag-tttgtgtgttagtatttcatgcaccaat 53472595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 37 - 109
Target Start/End: Complemental strand, 50887545 - 50887474
Alignment:
Q  37 atgagaaaatgtctcacatcgaataatatgaagaaatatgcaaagacttagtcatataaataaaagccttgtg 109  Q
    ||||||||||||| | |||||||||||||||| |||||||||||| ||| | |||||||||||| | ||||||    
T  50887545 atgagaaaatgtcccgcatcgaataatatgaa-aaatatgcaaaggcttggccatataaataaatgtcttgtg 50887474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 42 - 132
Target Start/End: Original strand, 32015150 - 32015240
Alignment:
Q  42 aaaatgtctcacatcgaataatatgaagaaatatgcaaagacttagtcatataaataaaagccttgtgtgtcagtattacttgcaccaata 132  Q
    |||| |||||||||  ||||||| ||||| |||||||||||||| |  | ||||||||| |  |||||||| |||||| ||||||||||||    
T  32015150 aaaaagtctcacataaaataataggaagatatatgcaaagacttggcaacataaataaaggttttgtgtgttagtatttcttgcaccaata 32015240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 61 - 119
Target Start/End: Original strand, 21206356 - 21206414
Alignment:
Q  61 aatatgaagaaatatgcaaagacttagtcatataaataaaagccttgtgtgtcagtatt 119  Q
    |||| |||||||||| ||||| ||| |||||||||||||||||| ||||| | ||||||    
T  21206356 aatacgaagaaatatacaaaggcttggtcatataaataaaagccatgtgtattagtatt 21206414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0065 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: scaffold0065
Description:

Target: scaffold0065; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 26 - 110
Target Start/End: Original strand, 34666 - 34750
Alignment:
Q  26 tatcaataataatgagaaaatgtctcacatcgaataatatgaagaaatatgcaaagacttagtcatataaataaaagccttgtgt 110  Q
    ||||||||||||||||||||||||||||||   ||||||| || ||||||| |||  |||||||||||||||||||| |||||||    
T  34666 tatcaataataatgagaaaatgtctcacattagataatataaaaaaatatgaaaatgcttagtcatataaataaaagtcttgtgt 34750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 37 - 132
Target Start/End: Original strand, 25889606 - 25889701
Alignment:
Q  37 atgagaaaatgtctcacatcgaataatatgaagaaatatgcaaagacttagtcatataaataaaagccttgtgtgtcagtattacttgcaccaata 132  Q
    ||||||||||||| ||||||| |||| |||||||  |||||||||  || |||||||||||||||| ||||| ||| |||||| ||||||||||||    
T  25889606 atgagaaaatgtcccacatcggataacatgaagagttatgcaaaggtttggtcatataaataaaagtcttgtatgttagtatttcttgcaccaata 25889701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 42 - 132
Target Start/End: Original strand, 31141391 - 31141481
Alignment:
Q  42 aaaatgtctcacatcgaataatatgaagaaatatgcaaagacttagtcatataaataaaagccttgtgtgtcagtattacttgcaccaata 132  Q
    |||| ||||||||||  | |||| ||||||||||||||||| |||| |||||||||||||| |||| |||| |||||| ||| ||||||||    
T  31141391 aaaaagtctcacatcagagaataggaagaaatatgcaaagatttagccatataaataaaagtcttgcgtgttagtatttcttacaccaata 31141481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 41 - 124
Target Start/End: Original strand, 30046404 - 30046489
Alignment:
Q  41 gaaaatgtctcacatcgaataatatgaagaaa--tatgcaaagacttagtcatataaataaaagccttgtgtgtcagtattacttg 124  Q
    |||||||||||| |||| |||||||||| |||  |||||||||||||   ||||||||||||||| |||||||| |||||| ||||    
T  30046404 gaaaatgtctcatatcggataatatgaaaaaaaatatgcaaagacttgaccatataaataaaagctttgtgtgttagtatttcttg 30046489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 30 - 81
Target Start/End: Complemental strand, 25579051 - 25578999
Alignment:
Q  30 aataataatgagaa-aatgtctcacatcgaataatatgaagaaatatgcaaag 81  Q
    ||||||||| |||| |||||||||||||| |||||||||||||||||||||||    
T  25579051 aataataattagaataatgtctcacatcggataatatgaagaaatatgcaaag 25578999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 92 - 132
Target Start/End: Original strand, 42001905 - 42001945
Alignment:
Q  92 ataaataaaagccttgtgtgtcagtattacttgcaccaata 132  Q
    ||||||||||| ||||||||| |||| ||||||||||||||    
T  42001905 ataaataaaagtcttgtgtgttagtaatacttgcaccaata 42001945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University