View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19240_low_29 (Length: 265)
Name: NF19240_low_29
Description: NF19240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19240_low_29 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 10 - 265
Target Start/End: Original strand, 53630632 - 53630887
Alignment:
| Q |
10 |
attatactcttacatgatttttagcggctaatgttactttctttgatgtgtggaattgtttaaatcatatggatatgatttagcgaaataattagatttg |
109 |
Q |
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| T |
53630632 |
attacactcttacatgatttttagcggctaatgttactttctttgatgtgtggaattgtttaaatcatatggatatgatttagcgaaataattagatttg |
53630731 |
T |
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| Q |
110 |
atgtgtgggattgtttacaacacatggttttgcgaaataattagaatactttcgatcatgatatctcgtttcaaataagtaaaaattaggtcggtcctag |
209 |
Q |
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| T |
53630732 |
atgtgtgggattgtttacaacacatggtttcgcgaaataattagaatactttcgatcatgatatctcgtttcaaataagtaaaaactaggtcggtcctag |
53630831 |
T |
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| Q |
210 |
cattttacaaacatagatattagccattttcttcttaattttcacaaataattggc |
265 |
Q |
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| T |
53630832 |
cattttacgaacatagatattagccattttcttcttaattttcacaaataattggc |
53630887 |
T |
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