View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19240_low_30 (Length: 253)

Name: NF19240_low_30
Description: NF19240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19240_low_30
NF19240_low_30
[»] chr4 (22 HSPs)
chr4 (1-101)||(46286761-46286861)
chr4 (139-247)||(46286885-46286994)
chr4 (17-101)||(50517261-50517345)
chr4 (17-101)||(24966470-24966554)
chr4 (17-97)||(26491078-26491158)
chr4 (1-71)||(49501163-49501233)
chr4 (1-71)||(49507228-49507298)
chr4 (17-69)||(5800481-5800533)
chr4 (20-68)||(8563342-8563390)
chr4 (17-69)||(28484413-28484465)
chr4 (1-47)||(8084261-8084307)
chr4 (1-47)||(42937416-42937462)
chr4 (17-58)||(29510060-29510101)
chr4 (17-69)||(29856033-29856085)
chr4 (1-69)||(37916290-37916358)
chr4 (1-69)||(49834466-49834534)
chr4 (1-47)||(29469215-29469261)
chr4 (20-57)||(9972844-9972881)
chr4 (139-238)||(24966318-24966421)
chr4 (13-46)||(51967341-51967374)
chr4 (13-45)||(23170738-23170770)
chr4 (1-57)||(41725614-41725670)
[»] chr3 (20 HSPs)
chr3 (1-101)||(4962680-4962780)
chr3 (17-69)||(33693324-33693376)
chr3 (17-69)||(16155232-16155284)
chr3 (1-69)||(20833396-20833464)
chr3 (155-238)||(43173093-43173177)
chr3 (191-238)||(33693493-33693540)
chr3 (1-47)||(49296168-49296214)
chr3 (1-97)||(8598711-8598807)
chr3 (1-57)||(21386477-21386533)
chr3 (17-69)||(26107844-26107896)
chr3 (1-69)||(49458410-49458478)
chr3 (17-69)||(50902942-50902994)
chr3 (1-56)||(51737333-51737388)
chr3 (2-69)||(52810858-52810925)
chr3 (27-69)||(7437552-7437594)
chr3 (1-47)||(22489487-22489533)
chr3 (17-63)||(36673791-36673837)
chr3 (1-47)||(53836014-53836060)
chr3 (20-57)||(37832643-37832680)
chr3 (1-66)||(48379649-48379714)
[»] chr1 (26 HSPs)
chr1 (1-101)||(25253566-25253666)
chr1 (17-101)||(42304448-42304532)
chr1 (1-100)||(28403895-28403994)
chr1 (1-69)||(47371555-47371623)
chr1 (1-79)||(32760069-32760147)
chr1 (20-101)||(15927391-15927472)
chr1 (17-85)||(48966455-48966523)
chr1 (1-63)||(45273067-45273129)
chr1 (17-66)||(5494731-5494780)
chr1 (154-238)||(32759927-32760011)
chr1 (8-57)||(35177202-35177251)
chr1 (17-66)||(49453043-49453092)
chr1 (1-97)||(4005140-4005236)
chr1 (1-41)||(49236974-49237014)
chr1 (155-238)||(49452878-49452962)
chr1 (1-97)||(51106965-51107061)
chr1 (1-56)||(3583549-3583604)
chr1 (1-47)||(1243308-1243354)
chr1 (1-47)||(11579102-11579148)
chr1 (1-47)||(26757688-26757734)
chr1 (1-47)||(41353494-41353540)
chr1 (20-97)||(9192116-9192193)
chr1 (8-69)||(46328493-46328554)
chr1 (139-238)||(47371395-47371498)
chr1 (25-69)||(38535776-38535820)
chr1 (25-69)||(38557994-38558038)
[»] chr7 (23 HSPs)
chr7 (17-101)||(42610685-42610769)
chr7 (13-69)||(8675843-8675899)
chr7 (154-238)||(23017188-23017273)
chr7 (1-69)||(21067879-21067947)
chr7 (13-69)||(29893483-29893539)
chr7 (1-69)||(44121571-44121639)
chr7 (17-69)||(48136866-48136918)
chr7 (1-47)||(14741478-14741524)
chr7 (20-66)||(21024137-21024183)
chr7 (1-71)||(30823137-30823207)
chr7 (1-69)||(7993656-7993724)
chr7 (7-47)||(16709491-16709531)
chr7 (7-47)||(17683727-17683767)
chr7 (17-69)||(21486210-21486262)
chr7 (7-71)||(29586019-29586083)
chr7 (13-57)||(34656669-34656713)
chr7 (1-69)||(37328406-37328474)
chr7 (1-69)||(37972515-37972583)
chr7 (17-63)||(28034492-28034538)
chr7 (1-63)||(29614439-29614501)
chr7 (1-63)||(47067209-47067271)
chr7 (20-57)||(19594281-19594318)
chr7 (60-101)||(23017093-23017134)
[»] chr6 (13 HSPs)
chr6 (2-101)||(16438759-16438858)
chr6 (20-101)||(24194484-24194566)
chr6 (154-235)||(31534912-31534994)
chr6 (17-69)||(2606963-2607015)
chr6 (60-101)||(28900805-28900846)
chr6 (1-97)||(1463623-1463719)
chr6 (1-97)||(6788152-6788248)
chr6 (1-41)||(31535068-31535108)
chr6 (1-57)||(31975644-31975700)
chr6 (13-79)||(12029039-12029105)
chr6 (29-99)||(33641247-33641317)
chr6 (20-57)||(31996240-31996277)
chr6 (20-64)||(3000311-3000355)
[»] scaffold0110 (1 HSPs)
scaffold0110 (1-69)||(39268-39336)
[»] chr8 (18 HSPs)
chr8 (154-235)||(27974816-27974898)
chr8 (154-235)||(28032085-28032167)
chr8 (8-101)||(26620294-26620387)
chr8 (1-68)||(12522415-12522482)
chr8 (1-79)||(8029811-8029889)
chr8 (18-86)||(27915542-27915610)
chr8 (18-86)||(27961961-27962029)
chr8 (1-71)||(31625809-31625879)
chr8 (17-67)||(42423258-42423308)
chr8 (1-63)||(43166314-43166376)
chr8 (1-86)||(27878598-27878683)
chr8 (1-86)||(28018779-28018864)
chr8 (13-68)||(28317054-28317108)
chr8 (1-47)||(19484267-19484313)
chr8 (1-57)||(10294983-10295039)
chr8 (1-69)||(16364207-16364275)
chr8 (17-69)||(26856622-26856674)
chr8 (1-69)||(32498042-32498110)
[»] chr2 (23 HSPs)
chr2 (17-101)||(38295667-38295751)
chr2 (154-236)||(42242200-42242283)
chr2 (1-79)||(40829688-40829766)
chr2 (1-69)||(6224210-6224278)
chr2 (155-247)||(34342432-34342527)
chr2 (1-69)||(25288664-25288732)
chr2 (2-69)||(18727628-18727695)
chr2 (1-47)||(18899931-18899977)
chr2 (17-63)||(26789302-26789348)
chr2 (154-238)||(31846993-31847081)
chr2 (20-57)||(35404312-35404349)
chr2 (13-57)||(3991837-3991881)
chr2 (17-69)||(43079007-43079059)
chr2 (7-77)||(2308687-2308757)
chr2 (1-63)||(7027404-7027466)
chr2 (20-57)||(2103542-2103579)
chr2 (20-57)||(13898547-13898584)
chr2 (20-57)||(14039164-14039201)
chr2 (20-57)||(19948609-19948646)
chr2 (20-57)||(38413447-38413484)
chr2 (20-57)||(41978908-41978945)
chr2 (1-57)||(11153343-11153399)
chr2 (17-65)||(31847203-31847251)
[»] scaffold0013 (1 HSPs)
scaffold0013 (154-238)||(89470-89558)
[»] scaffold0383 (1 HSPs)
scaffold0383 (1-67)||(16664-16730)
[»] scaffold0152 (2 HSPs)
scaffold0152 (1-67)||(20900-20966)
scaffold0152 (1-67)||(28835-28901)
[»] chr5 (9 HSPs)
chr5 (20-68)||(33892824-33892872)
chr5 (1-57)||(37798113-37798169)
chr5 (1-63)||(37014355-37014417)
chr5 (1-69)||(4240099-4240167)
chr5 (1-97)||(7125118-7125214)
chr5 (7-57)||(21238752-21238802)
chr5 (13-46)||(2675078-2675111)
chr5 (15-64)||(5651173-5651222)
chr5 (17-77)||(29716764-29716824)
[»] scaffold1128 (1 HSPs)
scaffold1128 (1-66)||(888-953)
[»] scaffold0573 (1 HSPs)
scaffold0573 (60-101)||(8948-8989)
[»] scaffold0246 (1 HSPs)
scaffold0246 (20-68)||(1438-1486)
[»] scaffold0421 (1 HSPs)
scaffold0421 (20-56)||(1770-1806)
[»] scaffold0042 (1 HSPs)
scaffold0042 (1-69)||(57697-57765)


Alignment Details
Target: chr4 (Bit Score: 85; Significance: 1e-40; HSPs: 22)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 46286761 - 46286861
Alignment:
Q  1 tttctagtaaactcgaaaggtttgacgagtttgaccgagttaacacttgataaactcttgtaaactcgatcaagtttaccaagttttacgagtttacatc 100  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||| |||||||||||    
T  46286761 tttctagtaaactcggaaggtttgacgagtttgaccgagttaacactcgataaactcttgtaaactcgatcaagtttaccgagttttatgagtttacatc 46286860  T
Q  101 t 101  Q
    |    
T  46286861 t 46286861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 139 - 247
Target Start/End: Original strand, 46286885 - 46286994
Alignment:
Q  139 ttcaaaactcagtgtcttttctacaagcccaaagagtgaaacgctcactgaa-agttacatttacaataacacattcctgaaatgaaacgtttctttttc 237  Q
    ||||||||||||||||||||||||||||||||||| ||||||| || ||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  46286885 ttcaaaactcagtgtcttttctacaagcccaaagactgaaacgttcgctgaatagttacatttacaataacacattcctgaaatgaaacgtttctttttc 46286984  T
Q  238 tctctgctcc 247  Q
    | ||| ||||    
T  46286985 tttcttctcc 46286994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 17 - 101
Target Start/End: Original strand, 50517261 - 50517345
Alignment:
Q  17 aaggtttgacgagtttgaccgagttaacacttgataaactcttgtaaactcgatcaagtttaccaagttttacgagtttacatct 101  Q
    ||||||||||||||||||||||||||||||| | ||||||| ||||||||||| | | |||||| ||||||||||||||||||||    
T  50517261 aaggtttgacgagtttgaccgagttaacactcggtaaactcgtgtaaactcgaccgattttaccgagttttacgagtttacatct 50517345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 17 - 101
Target Start/End: Complemental strand, 24966554 - 24966470
Alignment:
Q  17 aaggtttgacgagtttgaccgagttaacacttgataaactcttgtaaactcgatcaagtttaccaagttttacgagtttacatct 101  Q
    |||||||| ||||||||||| |||||||||||| ||||||| ||||||||||| | |||||||| |||||||||| |||||||||    
T  24966554 aaggtttgccgagtttgaccaagttaacacttggtaaactcgtgtaaactcgaccgagtttaccgagttttacgaatttacatct 24966470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 17 - 97
Target Start/End: Complemental strand, 26491158 - 26491078
Alignment:
Q  17 aaggtttgacgagtttgaccgagttaacacttgataaactcttgtaaactcgatcaagtttaccaagttttacgagtttac 97  Q
    ||||||||||||||||||||||||||||| ||| ||||||| |||||| |||||  |||||||| ||||||||||||||||    
T  26491158 aaggtttgacgagtttgaccgagttaacatttggtaaactcgtgtaaattcgattgagtttaccgagttttacgagtttac 26491078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 49501233 - 49501163
Alignment:
Q  1 tttctagtaaactcgaaaggtttgacgagtttgaccgagttaacacttgataaactcttgtaaactcgatc 71  Q
    ||||| ||||| ||| ||||||| ||||||||||| ||||||||||| | ||||||| |||||||||||||    
T  49501233 tttctggtaaaatcggaaggtttaacgagtttgacggagttaacactcggtaaactcgtgtaaactcgatc 49501163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 49507298 - 49507228
Alignment:
Q  1 tttctagtaaactcgaaaggtttgacgagtttgaccgagttaacacttgataaactcttgtaaactcgatc 71  Q
    ||||| ||||| ||| ||||||| ||||||||||| ||||||||||| | ||||||| |||||||||||||    
T  49507298 tttctggtaaaatcggaaggtttaacgagtttgacggagttaacactcggtaaactcgtgtaaactcgatc 49507228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 17 - 69
Target Start/End: Original strand, 5800481 - 5800533
Alignment:
Q  17 aaggtttgacgagtttgaccgagttaacacttgataaactcttgtaaactcga 69  Q
    ||||||| ||||||||||| ||||||||||| ||||||||| |||||||||||    
T  5800481 aaggtttaacgagtttgactgagttaacactcgataaactcgtgtaaactcga 5800533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 20 - 68
Target Start/End: Complemental strand, 8563390 - 8563342
Alignment:
Q  20 gtttgacgagtttgaccgagttaacacttgataaactcttgtaaactcg 68  Q
    ||||||||||||||||||||||||||| || ||||||| ||||||||||    
T  8563390 gtttgacgagtttgaccgagttaacacgtgttaaactcgtgtaaactcg 8563342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 17 - 69
Target Start/End: Original strand, 28484413 - 28484465
Alignment:
Q  17 aaggtttgacgagtttgaccgagttaacacttgataaactcttgtaaactcga 69  Q
    ||||||| ||||||||||| ||||||||||| ||||||||| |||||||||||    
T  28484413 aaggtttaacgagtttgactgagttaacactcgataaactcgtgtaaactcga 28484465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 8084261 - 8084307
Alignment:
Q  1 tttctagtaaactcgaaaggtttgacgagtttgaccgagttaacact 47  Q
    ||||||||||| ||| || ||||||||||||||||||||||||||||    
T  8084261 tttctagtaaaatcggaaagtttgacgagtttgaccgagttaacact 8084307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 42937462 - 42937416
Alignment:
Q  1 tttctagtaaactcgaaaggtttgacgagtttgaccgagttaacact 47  Q
    ||||| ||||| |||||| ||||||||||||||||||||||||||||    
T  42937462 tttctggtaaaatcgaaaagtttgacgagtttgaccgagttaacact 42937416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 17 - 58
Target Start/End: Complemental strand, 29510101 - 29510060
Alignment:
Q  17 aaggtttgacgagtttgaccgagttaacacttgataaactct 58  Q
    ||||||||||||||||||||||||||||||| | ||||||||    
T  29510101 aaggtttgacgagtttgaccgagttaacactcggtaaactct 29510060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 69
Target Start/End: Original strand, 29856033 - 29856085
Alignment:
Q  17 aaggtttgacgagtttgaccgagttaacacttgataaactcttgtaaactcga 69  Q
    ||||||| ||||||||||| ||||||||||| | ||||||| |||||||||||    
T  29856033 aaggtttaacgagtttgactgagttaacactcggtaaactcgtgtaaactcga 29856085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 37916290 - 37916358
Alignment:
Q  1 tttctagtaaactcgaaaggtttgacgagtttgaccgagttaacacttgataaactcttgtaaactcga 69  Q
    ||||| ||||| ||| ||||||| ||||||||||| |||||||||||   ||||||| |||||||||||    
T  37916290 tttctggtaaaatcggaaggtttaacgagtttgactgagttaacactcagtaaactcgtgtaaactcga 37916358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 49834534 - 49834466
Alignment:
Q  1 tttctagtaaactcgaaaggtttgacgagtttgaccgagttaacacttgataaactcttgtaaactcga 69  Q
    ||||| ||||| ||| ||||||| ||||||||||| ||||||| ||| | ||||||| |||||||||||    
T  49834534 tttctggtaaaatcggaaggtttaacgagtttgactgagttaatactcggtaaactcgtgtaaactcga 49834466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 29469215 - 29469261
Alignment:
Q  1 tttctagtaaactcgaaaggtttgacgagtttgaccgagttaacact 47  Q
    ||||| ||||| ||| || ||||||||||||||||||||||||||||    
T  29469215 tttctggtaaaatcggaaagtttgacgagtttgaccgagttaacact 29469261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 20 - 57
Target Start/End: Original strand, 9972844 - 9972881
Alignment:
Q  20 gtttgacgagtttgaccgagttaacacttgataaactc 57  Q
    ||||||||||||||||||||||||||| || |||||||    
T  9972844 gtttgacgagtttgaccgagttaacacgtgttaaactc 9972881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 139 - 238
Target Start/End: Complemental strand, 24966421 - 24966318
Alignment:
Q  139 ttcaaaactcagtgtcttttctacaagcccaaagagtgaaacgctcactgaaa-gttacatttacaataacacatt---cctgaaatgaaacgtttcttt 234  Q
    |||||||| || | |||||||||| |||||||||| ||||||  | ||||||  ||||| ||||||||||||| ||   ||| |||||||| ||||||||    
T  24966421 ttcaaaacccaatttcttttctactagcccaaagactgaaacatttactgaattgttacctttacaataacactttgttcctaaaatgaaatgtttcttt 24966322  T
Q  235 ttct 238  Q
    ||||    
T  24966321 ttct 24966318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 13 - 46
Target Start/End: Original strand, 51967341 - 51967374
Alignment:
Q  13 tcgaaaggtttgacgagtttgaccgagttaacac 46  Q
    |||||| |||||||||||||||||||||||||||    
T  51967341 tcgaaaagtttgacgagtttgaccgagttaacac 51967374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 45
Target Start/End: Complemental strand, 23170770 - 23170738
Alignment:
Q  13 tcgaaaggtttgacgagtttgaccgagttaaca 45  Q
    |||||| ||||||||||||||||||||||||||    
T  23170770 tcgaaaagtttgacgagtttgaccgagttaaca 23170738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 41725614 - 41725670
Alignment:
Q  1 tttctagtaaactcgaaaggtttgacgagtttgaccgagttaacacttgataaactc 57  Q
    ||||| ||||| ||| ||||||| ||||||||||| ||||||||||| | |||||||    
T  41725614 tttctggtaaaatcggaaggtttaacgagtttgactgagttaacactcggtaaactc 41725670  T

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Target: chr3 (Bit Score: 61; Significance: 3e-26; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 4962780 - 4962680
Alignment:
Q  1 tttctagtaaactcgaaaggtttgacgagtttgaccgagttaacacttgataaactcttgtaaactcgatcaagtttaccaagttttacgagtttacatc 100  Q
    |||| |||||| ||||||||||||||||||||||||||||||||||| | ||||||| ||||||||||| | |||||| | ||||||| |||||||||||    
T  4962780 tttcaagtaaaatcgaaaggtttgacgagtttgaccgagttaacactcggtaaactcatgtaaactcgaccgagtttatcgagttttatgagtttacatc 4962681  T
Q  101 t 101  Q
    |    
T  4962680 t 4962680  T

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Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 17 - 69
Target Start/End: Original strand, 33693324 - 33693376
Alignment:
Q  17 aaggtttgacgagtttgaccgagttaacacttgataaactcttgtaaactcga 69  Q
    ||||||||||||||||||||||||||||||| | ||||||| |||||||||||    
T  33693324 aaggtttgacgagtttgaccgagttaacactcggtaaactcgtgtaaactcga 33693376  T

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Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 17 - 69
Target Start/End: Original strand, 16155232 - 16155284
Alignment:
Q  17 aaggtttgacgagtttgaccgagttaacacttgataaactcttgtaaactcga 69  Q
    |||||||||||||||||||||||||||||||   ||||||| |||||||||||    
T  16155232 aaggtttgacgagtttgaccgagttaacactcagtaaactcgtgtaaactcga 16155284  T

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Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 20833396 - 20833464
Alignment:
Q  1 tttctagtaaactcgaaaggtttgacgagtttgaccgagttaacacttgataaactcttgtaaactcga 69  Q
    ||||| ||||| ||| ||||||| ||||||||||| ||||||||||| | ||||||| |||||||||||    
T  20833396 tttctggtaaaatcggaaggtttaacgagtttgactgagttaacactcggtaaactcgtgtaaactcga 20833464  T

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Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 155 - 238
Target Start/End: Original strand, 43173093 - 43173177
Alignment:
Q  155 ttttctacaagcccaaagagtgaaacgctcactgaa-agttacatttacaataacacattcctgaaatgaaacgtttctttttct 238  Q
    |||||||||| |||||||| | ||| | | |||||| |||||  |||||| |||||| |||||||||||||||||||||||||||    
T  43173093 ttttctacaaccccaaagactaaaatgtttactgaatagttatctttacagtaacacgttcctgaaatgaaacgtttctttttct 43173177  T

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Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 191 - 238
Target Start/End: Original strand, 33693493 - 33693540
Alignment:
Q  191 agttacatttacaataacacattcctgaaatgaaacgtttctttttct 238  Q
    |||||| ||||||||||||| |||||||||||| ||||||||||||||    
T  33693493 agttacctttacaataacacgttcctgaaatgagacgtttctttttct 33693540  T

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Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 49296168 - 49296214
Alignment:
Q  1 tttctagtaaactcgaaaggtttgacgagtttgaccgagttaacact 47  Q
    ||||| ||||| |||||| ||||||||||||||||||||||||||||    
T  49296168 tttctggtaaaatcgaaaagtttgacgagtttgaccgagttaacact 49296214  T

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Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 8598711 - 8598807
Alignment:
Q  1 tttctagtaaactcgaaaggtttgacgagtttgaccgagttaacacttgataaactcttgtaaactcgatcaagtttaccaagttttacgagtttac 97  Q
    ||||| ||||| ||| || ||||||||||||||||||||||||||||   ||||||| |||||| |||  | ||||||||   |||| |||||||||    
T  8598711 tttctggtaaaatcggaaagtttgacgagtttgaccgagttaacactcagtaaactcgtgtaaaatcgggcgagtttaccgttttttgcgagtttac 8598807  T

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Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 21386533 - 21386477
Alignment:
Q  1 tttctagtaaactcgaaaggtttgacgagtttgaccgagttaacacttgataaactc 57  Q
    ||||| ||||| |||||| |||||||||||||||||||||| ||||| | |||||||    
T  21386533 tttctggtaaaatcgaaaagtttgacgagtttgaccgagttgacactcggtaaactc 21386477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 69
Target Start/End: Original strand, 26107844 - 26107896
Alignment:
Q  17 aaggtttgacgagtttgaccgagttaacacttgataaactcttgtaaactcga 69  Q
    ||||||| ||||||||||| ||||||||||| | ||||||| |||||||||||    
T  26107844 aaggtttaacgagtttgactgagttaacactcggtaaactcgtgtaaactcga 26107896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 49458410 - 49458478
Alignment:
Q  1 tttctagtaaactcgaaaggtttgacgagtttgaccgagttaacacttgataaactcttgtaaactcga 69  Q
    ||||| ||||| ||| |||||||||||||||||||| | ||||||||   ||||||| |||||||||||    
T  49458410 tttctggtaaaatcggaaggtttgacgagtttgaccaaattaacactcagtaaactcgtgtaaactcga 49458478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 69
Target Start/End: Complemental strand, 50902994 - 50902942
Alignment:
Q  17 aaggtttgacgagtttgaccgagttaacacttgataaactcttgtaaactcga 69  Q
    ||||||| ||||||||||| ||||||||||| | ||||||| |||||||||||    
T  50902994 aaggtttaacgagtttgactgagttaacactcggtaaactcgtgtaaactcga 50902942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 51737388 - 51737333
Alignment:
Q  1 tttctagtaaactcgaaaggtttgacgagtttgaccgagttaacacttgataaact 56  Q
    ||||||||||| ||| ||||||| ||||||||||| ||||||||||| | ||||||    
T  51737388 tttctagtaaaatcggaaggtttaacgagtttgactgagttaacactcggtaaact 51737333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 69
Target Start/End: Original strand, 52810858 - 52810925
Alignment:
Q  2 ttctagtaaactcgaaaggtttgacgagtttgaccgagttaacacttgataaactcttgtaaactcga 69  Q
    |||| ||||| ||| ||||||| ||||||||||| ||||||||||| | ||||||  |||||||||||    
T  52810858 ttctggtaaaatcggaaggtttaacgagtttgactgagttaacactcggtaaacttgtgtaaactcga 52810925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 69
Target Start/End: Complemental strand, 7437594 - 7437552
Alignment:
Q  27 gagtttgaccgagttaacacttgataaactcttgtaaactcga 69  Q
    ||||||||||||||||||||| | ||||||| |||||||||||    
T  7437594 gagtttgaccgagttaacactcggtaaactcgtgtaaactcga 7437552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 22489533 - 22489487
Alignment:
Q  1 tttctagtaaactcgaaaggtttgacgagtttgaccgagttaacact 47  Q
    ||||| ||||| ||| ||||||| |||||||||||||||||||||||    
T  22489533 tttctggtaaaatcggaaggtttaacgagtttgaccgagttaacact 22489487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 63
Target Start/End: Complemental strand, 36673837 - 36673791
Alignment:
Q  17 aaggtttgacgagtttgaccgagttaacacttgataaactcttgtaa 63  Q
    ||||||| ||||||||||| ||||||||||| ||||||||| |||||    
T  36673837 aaggtttaacgagtttgactgagttaacactcgataaactcgtgtaa 36673791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 53836014 - 53836060
Alignment:
Q  1 tttctagtaaactcgaaaggtttgacgagtttgaccgagttaacact 47  Q
    ||||| ||||| ||| || ||||||||||||||||||||||||||||    
T  53836014 tttctggtaaaatcggaaagtttgacgagtttgaccgagttaacact 53836060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 20 - 57
Target Start/End: Original strand, 37832643 - 37832680
Alignment:
Q  20 gtttgacgagtttgaccgagttaacacttgataaactc 57  Q
    ||||||||||||||||||||||||||| || |||||||    
T  37832643 gtttgacgagtttgaccgagttaacacgtgttaaactc 37832680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 48379649 - 48379714
Alignment:
Q  1 tttctagtaaactcgaaaggtttgacgagtttgaccgagttaacacttgataaactcttgtaaact 66  Q
    ||||| ||||| ||| |||| || ||||||||||| ||||||||||| | ||||||| ||||||||    
T  48379649 tttctggtaaaatcggaaggcttaacgagtttgactgagttaacactcggtaaactcgtgtaaact 48379714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 61; Significance: 3e-26; HSPs: 26)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 25253566 - 25253666
Alignment:
Q  1 tttctagtaaactcgaaaggtttgacgagtttgaccgagttaacacttgataaactcttgtaaactcgatcaagtttaccaagttttacgagtttacatc 100  Q
    ||||| ||||||||| ||| ||||||||||||||| ||||||||| | | ||||||||||||||||||||| |||||||| ||||||||||||| |||||    
T  25253566 tttctggtaaactcggaagatttgacgagtttgactgagttaacattcggtaaactcttgtaaactcgatcgagtttaccgagttttacgagttaacatc 25253665  T
Q  101 t 101  Q
    |    
T  25253666 t 25253666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 17 - 101
Target Start/End: Complemental strand, 42304532 - 42304448
Alignment:
Q  17 aaggtttgacgagtttgaccgagttaacacttgataaactcttgtaaactcgatcaagtttaccaagttttacgagtttacatct 101  Q
    ||||||| ||||||||||||||||||||||| | ||||||| ||||||||||| | |||||||  ||||||||||||||||||||    
T  42304532 aaggtttaacgagtttgaccgagttaacactaggtaaactcgtgtaaactcgaccgagtttactgagttttacgagtttacatct 42304448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 28403994 - 28403895
Alignment:
Q  1 tttctagtaaactcgaaaggtttgacgagtttgaccgagttaacacttgataaactcttgtaaactcgatcaagtttaccaagttttacgagtttacatc 100  Q
    |||||| |||| |||||| ||||||||| |||||||||||||||||| | ||||||| ||||||||||| | |||||||  |||||| |||| |||||||    
T  28403994 tttctaataaaatcgaaatgtttgacgaatttgaccgagttaacactcggtaaactcatgtaaactcgaccgagtttactgagttttgcgagcttacatc 28403895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 47371623 - 47371555
Alignment:
Q  1 tttctagtaaactcgaaaggtttgacgagtttgaccgagttaacacttgataaactcttgtaaactcga 69  Q
    ||||| ||||| ||| |||||||| |||||||||||||||||||||| | ||||||| |||||||||||    
T  47371623 tttctggtaaaatcggaaggtttgccgagtttgaccgagttaacactcggtaaactcgtgtaaactcga 47371555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 79
Target Start/End: Complemental strand, 32760147 - 32760069
Alignment:
Q  1 tttctagtaaactcgaaaggtttgacgagtttgaccgagttaacacttgataaactcttgtaaactcgatcaagtttac 79  Q
    ||||||||||| |||  ||| || |||||||||||||||||||||||   ||||||| ||||||||||||| |||||||    
T  32760147 tttctagtaaaatcgggaggcttaacgagtttgaccgagttaacactcactaaactcgtgtaaactcgatcgagtttac 32760069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 20 - 101
Target Start/End: Original strand, 15927391 - 15927472
Alignment:
Q  20 gtttgacgagtttgaccgagttaacacttgataaactcttgtaaactcgatcaagtttaccaagttttacgagtttacatct 101  Q
    |||||||||||||||| ||||||||| | |||||||| |||||||||| | | |||||    ||||||||||||||||||||    
T  15927391 gtttgacgagtttgactgagttaacattcgataaactattgtaaactcaaccgagtttcttgagttttacgagtttacatct 15927472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 17 - 85
Target Start/End: Complemental strand, 48966523 - 48966455
Alignment:
Q  17 aaggtttgacgagtttgaccgagttaacacttgataaactcttgtaaactcgatcaagtttaccaagtt 85  Q
    ||||||||||||||||||||||||||| ||| | ||||||| ||||||||| | | |||||| ||||||    
T  48966523 aaggtttgacgagtttgaccgagttaatactcggtaaactcgtgtaaactctaccgagtttatcaagtt 48966455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 45273067 - 45273129
Alignment:
Q  1 tttctagtaaactcgaaaggtttgacgagtttgaccgagttaacacttgataaactcttgtaa 63  Q
    ||||| ||||| ||| ||||||||||||||||||| ||||||||||| | ||||||| |||||    
T  45273067 tttctggtaaaatcggaaggtttgacgagtttgactgagttaacactcggtaaactcgtgtaa 45273129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 17 - 66
Target Start/End: Complemental strand, 5494780 - 5494731
Alignment:
Q  17 aaggtttgacgagtttgaccgagttaacacttgataaactcttgtaaact 66  Q
    ||||||||| ||||||||| ||||||||||| ||||||||| ||||||||    
T  5494780 aaggtttgatgagtttgactgagttaacactcgataaactcgtgtaaact 5494731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 154 - 238
Target Start/End: Complemental strand, 32760011 - 32759927
Alignment:
Q  154 cttttctacaagcccaaagagtgaaacgctcactgaa-agttacatttacaataacacattcctgaaatgaaacgtttctttttct 238  Q
    ||||||||||| |||||||| ||||||| | |||||| | ||||||||||  |||||  ||||||||||||||| |||||||||||    
T  32760011 cttttctacaaacccaaagactgaaacgtt-actgaataattacatttacgttaacatgttcctgaaatgaaacatttctttttct 32759927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 8 - 57
Target Start/End: Complemental strand, 35177251 - 35177202
Alignment:
Q  8 taaactcgaaaggtttgacgagtttgaccgagttaacacttgataaactc 57  Q
    |||| ||| |||| |||||||||||||||||||||||||| |||||||||    
T  35177251 taaaatcggaaggattgacgagtttgaccgagttaacactcgataaactc 35177202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 17 - 66
Target Start/End: Complemental strand, 49453092 - 49453043
Alignment:
Q  17 aaggtttgacgagtttgaccgagttaacacttgataaactcttgtaaact 66  Q
    |||||||||| |||||||||||||||||||| | ||||||| ||||||||    
T  49453092 aaggtttgacaagtttgaccgagttaacactcggtaaactcgtgtaaact 49453043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 4005140 - 4005236
Alignment:
Q  1 tttctagtaaactcgaaaggtttgacgagtttgaccgagttaacacttgataaactcttgtaaactcgatcaagtttaccaagttttacgagtttac 97  Q
    ||||| ||||| ||| || ||||||||||||||||||||||||||||   ||||||| |||||| |||  | ||||||||   |||| |||||||||    
T  4005140 tttctggtaaaatcggaaagtttgacgagtttgaccgagttaacactcagtaaactcgtgtaaaatcgggcgagtttaccgttttttgcgagtttac 4005236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 49237014 - 49236974
Alignment:
Q  1 tttctagtaaactcgaaaggtttgacgagtttgaccgagtt 41  Q
    ||||| ||||| |||||||||||||||||||||||||||||    
T  49237014 tttctggtaaaatcgaaaggtttgacgagtttgaccgagtt 49236974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 155 - 238
Target Start/End: Complemental strand, 49452962 - 49452878
Alignment:
Q  155 ttttctacaagcccaaagagtgaaacgctcactgaa-agttacatttacaataacacattcctgaaatgaaacgtttctttttct 238  Q
    ||||||||||| ||||||| ||||||| | | |||| |||||| |||||| |||||| || |||||||||||| ||| |||||||    
T  49452962 ttttctacaagtccaaagactgaaacgtttattgaatagttacctttacagtaacacgtttctgaaatgaaacttttttttttct 49452878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 51106965 - 51107061
Alignment:
Q  1 tttctagtaaactcgaaaggtttgacgagtttgaccgagttaacacttgataaactcttgtaaactcgatcaagtttaccaagttttacgagtttac 97  Q
    ||||| ||||| ||| || ||||||||||||||||||||||||||||   ||||||| |||||| |||  | ||||||||   |||| |||||||||    
T  51106965 tttctggtaaaatcggaaagtttgacgagtttgaccgagttaacactcagtaaactcgtgtaaaatcgggcgagtttaccgttttttgcgagtttac 51107061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 3583604 - 3583549
Alignment:
Q  1 tttctagtaaactcgaaaggtttgacgagtttgaccgagttaacacttgataaact 56  Q
    ||||||||||| ||| || ||||||||||||| |||||||||||||| | ||||||    
T  3583604 tttctagtaaaatcggaaagtttgacgagtttaaccgagttaacactcggtaaact 3583549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 1243354 - 1243308
Alignment:
Q  1 tttctagtaaactcgaaaggtttgacgagtttgaccgagttaacact 47  Q
    ||||| ||||| ||| || ||||||||||||||||||||||||||||    
T  1243354 tttctggtaaaatcggaaagtttgacgagtttgaccgagttaacact 1243308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 11579148 - 11579102
Alignment:
Q  1 tttctagtaaactcgaaaggtttgacgagtttgaccgagttaacact 47  Q
    ||||| ||||| ||| || ||||||||||||||||||||||||||||    
T  11579148 tttctggtaaaatcggaaagtttgacgagtttgaccgagttaacact 11579102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 26757688 - 26757734
Alignment:
Q  1 tttctagtaaactcgaaaggtttgacgagtttgaccgagttaacact 47  Q
    ||||| ||||| ||| || ||||||||||||||||||||||||||||    
T  26757688 tttctggtaaaatcggaaagtttgacgagtttgaccgagttaacact 26757734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 41353494 - 41353540
Alignment:
Q  1 tttctagtaaactcgaaaggtttgacgagtttgaccgagttaacact 47  Q
    ||||| ||||| ||| || ||||||||||||||||||||||||||||    
T  41353494 tttctggtaaaatcggaaagtttgacgagtttgaccgagttaacact 41353540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 20 - 97
Target Start/End: Original strand, 9192116 - 9192193
Alignment:
Q  20 gtttgacgagtttgaccgagttaacacttgataaactcttgtaaactcgatcaagtttaccaagttttacgagtttac 97  Q
    ||||||||||||||||||||||||||||   ||||||| |||||| |||  | ||||||||   |||| |||||||||    
T  9192116 gtttgacgagtttgaccgagttaacactcagtaaactcgtgtaaaatcgggcgagtttaccgttttttgcgagtttac 9192193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 8 - 69
Target Start/End: Original strand, 46328493 - 46328554
Alignment:
Q  8 taaactcgaaaggtttgacgagtttgaccgagttaacacttgataaactcttgtaaactcga 69  Q
    |||| ||| ||||||| ||||||||||  ||||||||||| | ||||||| |||||||||||    
T  46328493 taaaatcggaaggtttaacgagtttgattgagttaacactcggtaaactcgtgtaaactcga 46328554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 139 - 238
Target Start/End: Complemental strand, 47371498 - 47371395
Alignment:
Q  139 ttcaaaactcagtgtcttttctacaagcccaaagagtgaaacgctcactgaa-agttacatttacaataaca---cattcctgaaatgaaacgtttcttt 234  Q
    |||||||| || | ||||||||| ||||||||||| ||||||  | |||||| |||||| ||||||||||||     ||||| |||||||| ||||||||    
T  47371498 ttcaaaacccaatttcttttctagaagcccaaagactgaaacatttactgaatagttacctttacaataacatgttgttcctaaaatgaaatgtttcttt 47371399  T
Q  235 ttct 238  Q
    ||||    
T  47371398 ttct 47371395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 69
Target Start/End: Complemental strand, 38535820 - 38535776
Alignment:
Q  25 acgagtttgaccgagttaacacttgataaactcttgtaaactcga 69  Q
    ||||||||||| ||||||||||| | ||||||| |||||||||||    
T  38535820 acgagtttgactgagttaacactcggtaaactcgtgtaaactcga 38535776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 69
Target Start/End: Complemental strand, 38558038 - 38557994
Alignment:
Q  25 acgagtttgaccgagttaacacttgataaactcttgtaaactcga 69  Q
    ||||||||||| ||||||||||| | ||||||| |||||||||||    
T  38558038 acgagtttgactgagttaacactcggtaaactcgtgtaaactcga 38557994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 57; Significance: 7e-24; HSPs: 23)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 17 - 101
Target Start/End: Original strand, 42610685 - 42610769
Alignment:
Q  17 aaggtttgacgagtttgaccgagttaacacttgataaactcttgtaaactcgatcaagtttaccaagttttacgagtttacatct 101  Q
    ||||||||||||||||||||||||||||||| | ||||||| |||||| |||||  |||||||| ||||||||||||||||||||    
T  42610685 aaggtttgacgagtttgaccgagttaacactgggtaaactcgtgtaaattcgattgagtttaccgagttttacgagtttacatct 42610769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 13 - 69
Target Start/End: Original strand, 8675843 - 8675899
Alignment:
Q  13 tcgaaaggtttgacgagtttgaccgagttaacacttgataaactcttgtaaactcga 69  Q
    ||||||||||||||||||||||| ||||||||||| ||||||||| |||||||||||    
T  8675843 tcgaaaggtttgacgagtttgactgagttaacactcgataaactcgtgtaaactcga 8675899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 154 - 238
Target Start/End: Original strand, 23017188 - 23017273
Alignment:
Q  154 cttttctacaagcccaaagagtgaaacgctcactgaa-agttacatttacaataacacattcctgaaatgaaacgtttctttttct 238  Q
    |||||||||||||||||||| | ||||| | || ||| |||||| | |||| |||||| |||||||||||||||||||||||||||    
T  23017188 cttttctacaagcccaaagactaaaacgtttaccgaatagttacctatacagtaacacgttcctgaaatgaaacgtttctttttct 23017273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 21067879 - 21067947
Alignment:
Q  1 tttctagtaaactcgaaaggtttgacgagtttgaccgagttaacacttgataaactcttgtaaactcga 69  Q
    ||||| ||||| ||| ||||||| ||||||||||| ||||||||||| | ||||||| |||||||||||    
T  21067879 tttctggtaaaatcggaaggtttaacgagtttgactgagttaacactcggtaaactcgtgtaaactcga 21067947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 13 - 69
Target Start/End: Original strand, 29893483 - 29893539
Alignment:
Q  13 tcgaaaggtttgacgagtttgaccgagttaacacttgataaactcttgtaaactcga 69  Q
    ||||||||||| ||||||||||| ||||||||||| | ||||||| |||||||||||    
T  29893483 tcgaaaggtttaacgagtttgactgagttaacactcggtaaactcgtgtaaactcga 29893539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 44121639 - 44121571
Alignment:
Q  1 tttctagtaaactcgaaaggtttgacgagtttgaccgagttaacacttgataaactcttgtaaactcga 69  Q
    ||||| ||||| ||| |||| || ||||||||||| ||||||||||||| ||||||| |||||||||||    
T  44121639 tttctggtaaaatcggaaggcttaacgagtttgactgagttaacacttggtaaactcgtgtaaactcga 44121571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 17 - 69
Target Start/End: Complemental strand, 48136918 - 48136866
Alignment:
Q  17 aaggtttgacgagtttgaccgagttaacacttgataaactcttgtaaactcga 69  Q
    ||||||||||||||||||| ||||||||||| |||||| || |||||||||||    
T  48136918 aaggtttgacgagtttgactgagttaacactcgataaattcgtgtaaactcga 48136866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 14741478 - 14741524
Alignment:
Q  1 tttctagtaaactcgaaaggtttgacgagtttgaccgagttaacact 47  Q
    ||||||||||| ||| || ||||||||||||||||||||||||||||    
T  14741478 tttctagtaaaatcggaaagtttgacgagtttgaccgagttaacact 14741524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 20 - 66
Target Start/End: Original strand, 21024137 - 21024183
Alignment:
Q  20 gtttgacgagtttgaccgagttaacacttgataaactcttgtaaact 66  Q
    ||||||||||||||||||||||||||| || ||||||| ||||||||    
T  21024137 gtttgacgagtttgaccgagttaacacgtgttaaactcgtgtaaact 21024183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 30823137 - 30823207
Alignment:
Q  1 tttctagtaaactcgaaaggtttgacgagtttgaccgagttaacacttgataaactcttgtaaactcgatc 71  Q
    ||||||||||| ||| ||||||  ||||||||||  ||||||||||| | ||||||| |||||||||||||    
T  30823137 tttctagtaaaatcggaaggttcaacgagtttgattgagttaacactcggtaaactcgtgtaaactcgatc 30823207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 7993656 - 7993724
Alignment:
Q  1 tttctagtaaactcgaaaggtttgacgagtttgaccgagttaacacttgataaactcttgtaaactcga 69  Q
    ||||| ||||| ||| ||||||| ||||||||||| ||||||||||| | ||||||  |||||||||||    
T  7993656 tttctggtaaaatcggaaggtttaacgagtttgactgagttaacactcggtaaactggtgtaaactcga 7993724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 7 - 47
Target Start/End: Original strand, 16709491 - 16709531
Alignment:
Q  7 gtaaactcgaaaggtttgacgagtttgaccgagttaacact 47  Q
    ||||||||| |||||||||| ||||||||||||||||||||    
T  16709491 gtaaactcggaaggtttgacaagtttgaccgagttaacact 16709531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 7 - 47
Target Start/End: Original strand, 17683727 - 17683767
Alignment:
Q  7 gtaaactcgaaaggtttgacgagtttgaccgagttaacact 47  Q
    ||||||||| |||||||||| ||||||||||||||||||||    
T  17683727 gtaaactcggaaggtttgacaagtttgaccgagttaacact 17683767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 69
Target Start/End: Original strand, 21486210 - 21486262
Alignment:
Q  17 aaggtttgacgagtttgaccgagttaacacttgataaactcttgtaaactcga 69  Q
    ||||||||| |||||||| |||||||||||| | ||||||| |||||||||||    
T  21486210 aaggtttgatgagtttgatcgagttaacactcggtaaactcgtgtaaactcga 21486262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 7 - 71
Target Start/End: Original strand, 29586019 - 29586083
Alignment:
Q  7 gtaaactcgaaaggtttgacgagtttgaccgagttaacacttgataaactcttgtaaactcgatc 71  Q
    ||||| ||| ||||||| | ||||||||| ||||||||||| | ||||||| |||||||||||||    
T  29586019 gtaaaatcggaaggtttaatgagtttgactgagttaacactcggtaaactcgtgtaaactcgatc 29586083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 57
Target Start/End: Original strand, 34656669 - 34656713
Alignment:
Q  13 tcgaaaggtttgacgagtttgaccgagttaacacttgataaactc 57  Q
    |||||| ||||||||||||||||||||||||||| || |||||||    
T  34656669 tcgaaaagtttgacgagtttgaccgagttaacacgtgttaaactc 34656713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 37328406 - 37328474
Alignment:
Q  1 tttctagtaaactcgaaaggtttgacgagtttgaccgagttaacacttgataaactcttgtaaactcga 69  Q
    ||||| ||||| ||| ||||||| ||| ||||||| ||||||||||| | ||||||| |||||||||||    
T  37328406 tttctggtaaaatcggaaggtttaacgtgtttgactgagttaacactcggtaaactcgtgtaaactcga 37328474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 37972583 - 37972515
Alignment:
Q  1 tttctagtaaactcgaaaggtttgacgagtttgaccgagttaacacttgataaactcttgtaaactcga 69  Q
    ||||| ||||| ||| ||||||| |||| |||||| |||||| |||||| ||||||| |||||||||||    
T  37972583 tttctggtaaaatcggaaggtttaacgaatttgactgagttagcacttggtaaactcgtgtaaactcga 37972515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 63
Target Start/End: Complemental strand, 28034538 - 28034492
Alignment:
Q  17 aaggtttgacgagtttgaccgagttaacacttgataaactcttgtaa 63  Q
    ||||||| ||||||||||| ||||||||||||| ||||||| |||||    
T  28034538 aaggtttaacgagtttgactgagttaacacttggtaaactcatgtaa 28034492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 29614501 - 29614439
Alignment:
Q  1 tttctagtaaactcgaaaggtttgacgagtttgaccgagttaacacttgataaactcttgtaa 63  Q
    ||||| ||||| | ||||||||| ||||||||||| ||||||||||| | ||||||| |||||    
T  29614501 tttctggtaaaattgaaaggtttaacgagtttgactgagttaacactcggtaaactcgtgtaa 29614439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 47067209 - 47067271
Alignment:
Q  1 tttctagtaaactcgaaaggtttgacgagtttgaccgagttaacacttgataaactcttgtaa 63  Q
    ||||| ||||| | ||||||||| ||||||||||| ||||||||||| | ||||||| |||||    
T  47067209 tttctggtaaaattgaaaggtttaacgagtttgactgagttaacactcggtaaactcgtgtaa 47067271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 20 - 57
Target Start/End: Original strand, 19594281 - 19594318
Alignment:
Q  20 gtttgacgagtttgaccgagttaacacttgataaactc 57  Q
    ||||||||||||||||||||||||||| || |||||||    
T  19594281 gtttgacgagtttgaccgagttaacacgtgttaaactc 19594318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 60 - 101
Target Start/End: Original strand, 23017093 - 23017134
Alignment:
Q  60 gtaaactcgatcaagtttaccaagttttacgagtttacatct 101  Q
    |||||||||| | ||||||| |||||||||||||||||||||    
T  23017093 gtaaactcgaccgagtttacaaagttttacgagtttacatct 23017134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 52; Significance: 6e-21; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 2 - 101
Target Start/End: Original strand, 16438759 - 16438858
Alignment:
Q  2 ttctagtaaactcgaaaggtttgacgagtttgaccgagttaacacttgataaactcttgtaaactcgatcaagtttaccaagttttacgagtttacatct 101  Q
    |||| ||||| ||| |||||||||||||||| | ||||||| |||| | ||||||| ||||||||||||| |||||| | ||||||||||||||||||||    
T  16438759 ttctggtaaaatcggaaggtttgacgagtttaatcgagttagcactcggtaaactcgtgtaaactcgatcgagtttagcgagttttacgagtttacatct 16438858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 20 - 101
Target Start/End: Original strand, 24194484 - 24194566
Alignment:
Q  20 gtttgacgagt-ttgaccgagttaacacttgataaactcttgtaaactcgatcaagtttaccaagttttacgagtttacatct 101  Q
    ||||||||||| ||||||||||||||||| | ||||||| |||||| || ||| |||||||| || |||||||||||||||||    
T  24194484 gtttgacgagtattgaccgagttaacactcggtaaactcgtgtaaattcaatcgagtttaccgagctttacgagtttacatct 24194566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 154 - 235
Target Start/End: Complemental strand, 31534994 - 31534912
Alignment:
Q  154 cttttctacaagcccaaagagtgaaacgctcactgaa-agttacatttacaataacacattcctgaaatgaaacgtttctttt 235  Q
    |||| ||||||||||||||| ||||||| | |||||| |||||| |||||| |||||| ||| ||||||||||| ||||||||    
T  31534994 ctttactacaagcccaaagactgaaacgtttactgaatagttacctttacagtaacacgttcttgaaatgaaacctttctttt 31534912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 17 - 69
Target Start/End: Original strand, 2606963 - 2607015
Alignment:
Q  17 aaggtttgacgagtttgaccgagttaacacttgataaactcttgtaaactcga 69  Q
    ||||||||| |||||||||||||||||||||  |||||||||| |||||||||    
T  2606963 aaggtttgatgagtttgaccgagttaacactcaataaactcttataaactcga 2607015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 60 - 101
Target Start/End: Complemental strand, 28900846 - 28900805
Alignment:
Q  60 gtaaactcgatcaagtttaccaagttttacgagtttacatct 101  Q
    |||||||||| | |||||||||||||||||||||||||||||    
T  28900846 gtaaactcgaccgagtttaccaagttttacgagtttacatct 28900805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 1463719 - 1463623
Alignment:
Q  1 tttctagtaaactcgaaaggtttgacgagtttgaccgagttaacacttgataaactcttgtaaactcgatcaagtttaccaagttttacgagtttac 97  Q
    ||||| ||||| ||| || ||||||||||||||||||||||||||||   ||||||| |||||| |||  | ||||||||   |||| |||||||||    
T  1463719 tttctggtaaaatcggaaagtttgacgagtttgaccgagttaacactcagtaaactcgtgtaaaatcgggcgagtttaccgttttttgcgagtttac 1463623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 6788152 - 6788248
Alignment:
Q  1 tttctagtaaactcgaaaggtttgacgagtttgaccgagttaacacttgataaactcttgtaaactcgatcaagtttaccaagttttacgagtttac 97  Q
    ||||| ||||| ||| || ||||||||||||||||||||||||||||   ||||||| |||||| |||  | ||||||||   |||| |||||||||    
T  6788152 tttctggtaaaatcggaaagtttgacgagtttgaccgagttaacactcagtaaactcgtgtaaaatcgggcgagtttaccgttttttgcgagtttac 6788248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 31535108 - 31535068
Alignment:
Q  1 tttctagtaaactcgaaaggtttgacgagtttgaccgagtt 41  Q
    ||||| ||||| |||||||||||||||||||||||||||||    
T  31535108 tttctggtaaaatcgaaaggtttgacgagtttgaccgagtt 31535068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 31975700 - 31975644
Alignment:
Q  1 tttctagtaaactcgaaaggtttgacgagtttgaccgagttaacacttgataaactc 57  Q
    ||||| ||||| ||| ||||||||||||||||||||||||||| ||| | |||||||    
T  31975700 tttcttgtaaaatcggaaggtttgacgagtttgaccgagttaagactcggtaaactc 31975644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 79
Target Start/End: Original strand, 12029039 - 12029105
Alignment:
Q  13 tcgaaaggtttgacgagtttgaccgagttaacacttgataaactcttgtaaactcgatcaagtttac 79  Q
    |||||| ||||||||||||||||  ||||||||| |  ||||||| ||||||||||| | |||||||    
T  12029039 tcgaaatgtttgacgagtttgacatagttaacacgtattaaactcgtgtaaactcgaccgagtttac 12029105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 99
Target Start/End: Complemental strand, 33641317 - 33641247
Alignment:
Q  29 gtttgaccgagttaacacttgataaactcttgtaaactcgatcaagtttaccaagttttacgagtttacat 99  Q
    ||||||||||||||||||| ||||||||| || |||||| | | |||||||  ||||||| |||| |||||    
T  33641317 gtttgaccgagttaacactcgataaactcgtgcaaactctaccgagtttactgagttttaagagtatacat 33641247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 20 - 57
Target Start/End: Complemental strand, 31996277 - 31996240
Alignment:
Q  20 gtttgacgagtttgaccgagttaacacttgataaactc 57  Q
    ||||||||||||||||||||||||||| || |||||||    
T  31996277 gtttgacgagtttgaccgagttaacacgtgttaaactc 31996240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 64
Target Start/End: Original strand, 3000311 - 3000355
Alignment:
Q  20 gtttgacgagtttgaccgagttaacacttgataaactcttgtaaa 64  Q
    ||||||||||||||| ||||||||||||  |||||||| ||||||    
T  3000311 gtttgacgagtttgatcgagttaacactcaataaactcgtgtaaa 3000355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 39336 - 39268
Alignment:
Q  1 tttctagtaaactcgaaaggtttgacgagtttgaccgagttaacacttgataaactcttgtaaactcga 69  Q
    ||||| ||||| ||||||||||||||||||||||| |||||| |||||||||||||| |||||||||||    
T  39336 tttctggtaaaatcgaaaggtttgacgagtttgactgagttagcacttgataaactcgtgtaaactcga 39268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 47; Significance: 6e-18; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 154 - 235
Target Start/End: Complemental strand, 27974898 - 27974816
Alignment:
Q  154 cttttctacaagcccaaagagtgaaacgctcactgaa-agttacatttacaataacacattcctgaaatgaaacgtttctttt 235  Q
    |||||||||||||||||||| ||||||  | |||||| |||||| ||||||||||||| ||||||||||||||||||| ||||    
T  27974898 cttttctacaagcccaaagactgaaacatttactgaatagttacctttacaataacacgttcctgaaatgaaacgtttgtttt 27974816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 154 - 235
Target Start/End: Complemental strand, 28032167 - 28032085
Alignment:
Q  154 cttttctacaagcccaaagagtgaaacgctcactgaa-agttacatttacaataacacattcctgaaatgaaacgtttctttt 235  Q
    |||||||||||||||||||| ||||||  | |||||| |||||| ||||||||||||| ||||||||||||||||||| ||||    
T  28032167 cttttctacaagcccaaagactgaaacatttactgaatagttacctttacaataacacgttcctgaaatgaaacgtttgtttt 28032085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 8 - 101
Target Start/End: Complemental strand, 26620387 - 26620294
Alignment:
Q  8 taaactcgaaaggtttgacgagtttgaccgagttaacacttgataaactcttgtaaactcgatcaagtttaccaagttttacgagtttacatct 101  Q
    |||| |||||| ||||||||||||||| |||||||||||| ||||||||| |||||||| || | | ||||   ||||||||||||||||||||    
T  26620387 taaaatcgaaaagtttgacgagtttgatcgagttaacactcgataaactcatgtaaacttgaacgaatttattgagttttacgagtttacatct 26620294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 12522482 - 12522415
Alignment:
Q  1 tttctagtaaactcgaaaggtttgacgagtttgaccgagttaacacttgataaactcttgtaaactcg 68  Q
    ||||| ||||| | ||||||||||||||||||||||||||||||||||| ||||||| ||||| ||||    
T  12522482 tttctggtaaaattgaaaggtttgacgagtttgaccgagttaacacttggtaaactcgtgtaagctcg 12522415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 79
Target Start/End: Complemental strand, 8029889 - 8029811
Alignment:
Q  1 tttctagtaaactcgaaaggtttgacgagtttgaccgagttaacacttgataaactcttgtaaactcgatcaagtttac 79  Q
    ||||| ||||| ||| ||||||||||||||||||||||||||||||| | |||| || ||||||||||| | |||||||    
T  8029889 tttctggtaaaatcggaaggtttgacgagtttgaccgagttaacactcggtaaaatcgtgtaaactcgaccgagtttac 8029811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 18 - 86
Target Start/End: Complemental strand, 27915610 - 27915542
Alignment:
Q  18 aggtttgacgagtttgaccgagttaacacttgataaactcttgtaaactcgatcaagtttaccaagttt 86  Q
    |||||||||||||||||||||||||||||| ||| ||||| ||||||||||| | |||||  |||||||    
T  27915610 aggtttgacgagtttgaccgagttaacactcgatgaactcgtgtaaactcgaccgagttttacaagttt 27915542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 18 - 86
Target Start/End: Complemental strand, 27962029 - 27961961
Alignment:
Q  18 aggtttgacgagtttgaccgagttaacacttgataaactcttgtaaactcgatcaagtttaccaagttt 86  Q
    |||||||||||||||||||||||||||||| ||| ||||| ||||||||||| | |||||  |||||||    
T  27962029 aggtttgacgagtttgaccgagttaacactcgatgaactcgtgtaaactcgaccgagttttacaagttt 27961961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 31625809 - 31625879
Alignment:
Q  1 tttctagtaaactcgaaaggtttgacgagtttgaccgagttaacacttgataaactcttgtaaactcgatc 71  Q
    ||||| ||||| ||| ||||||| ||||||||||| ||||||||||| | ||||||| |||||||||||||    
T  31625809 tttctggtaaaatcggaaggtttaacgagtttgactgagttaacactcggtaaactcgtgtaaactcgatc 31625879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 17 - 67
Target Start/End: Original strand, 42423258 - 42423308
Alignment:
Q  17 aaggtttgacgagtttgaccgagttaacacttgataaactcttgtaaactc 67  Q
    ||||||||||||||||||||||||||||||| | ||||||| |||||||||    
T  42423258 aaggtttgacgagtttgaccgagttaacactgggtaaactcctgtaaactc 42423308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 43166376 - 43166314
Alignment:
Q  1 tttctagtaaactcgaaaggtttgacgagtttgaccgagttaacacttgataaactcttgtaa 63  Q
    ||||| ||||| | ||||||||||||||||||||| ||||||||||| | ||||||| |||||    
T  43166376 tttctggtaaaattgaaaggtttgacgagtttgactgagttaacactcggtaaactcgtgtaa 43166314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 27878683 - 27878598
Alignment:
Q  1 tttctagtaaactcgaaaggtttgacgagtttgaccgagttaacacttgataaactcttgtaaactcgatcaagtttaccaagttt 86  Q
    ||||| ||||| |||  |||||||||||||||||  ||||||||||| ||| ||||| ||||||||||| | |||||  |||||||    
T  27878683 tttctggtaaaatcggtaggtttgacgagtttgatagagttaacactcgatgaactcgtgtaaactcgaccgagttttacaagttt 27878598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 28018864 - 28018779
Alignment:
Q  1 tttctagtaaactcgaaaggtttgacgagtttgaccgagttaacacttgataaactcttgtaaactcgatcaagtttaccaagttt 86  Q
    ||||| ||||| |||  |||||||||||||||||  ||||||||||| ||| ||||| ||||||||||| | |||||  |||||||    
T  28018864 tttctggtaaaatcggtaggtttgacgagtttgatagagttaacactcgatgaactcgtgtaaactcgaccgagttttacaagttt 28018779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 13 - 68
Target Start/End: Complemental strand, 28317108 - 28317054
Alignment:
Q  13 tcgaaaggtttgacgagtttgaccgagttaacacttgataaactcttgtaaactcg 68  Q
    |||||| ||||||||||||||||||||||||||| || ||||| | ||||||||||    
T  28317108 tcgaaaagtttgacgagtttgaccgagttaacacgtg-taaacccctgtaaactcg 28317054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 19484267 - 19484313
Alignment:
Q  1 tttctagtaaactcgaaaggtttgacgagtttgaccgagttaacact 47  Q
    ||||| ||||| ||| || ||||||||||||||||||||||||||||    
T  19484267 tttctggtaaaatcggaaagtttgacgagtttgaccgagttaacact 19484313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 10295039 - 10294983
Alignment:
Q  1 tttctagtaaactcgaaaggtttgacgagtttgaccgagttaacacttgataaactc 57  Q
    ||||| ||||| ||| ||||||| ||||||||||| ||||||||||| | |||||||    
T  10295039 tttctggtaaaatcggaaggtttaacgagtttgactgagttaacactcggtaaactc 10294983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 16364207 - 16364275
Alignment:
Q  1 tttctagtaaactcgaaaggtttgacgagtttgaccgagttaacacttgataaactcttgtaaactcga 69  Q
    ||||||||||| ||| ||||||| |||||||||||  | |||||||| | ||||||| |||||| ||||    
T  16364207 tttctagtaaaatcggaaggtttaacgagtttgactaaattaacactcggtaaactcgtgtaaattcga 16364275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 69
Target Start/End: Original strand, 26856622 - 26856674
Alignment:
Q  17 aaggtttgacgagtttgaccgagttaacacttgataaactcttgtaaactcga 69  Q
    ||||||| ||||||||||| ||||||||||| | ||||||| |||||| ||||    
T  26856622 aaggtttaacgagtttgactgagttaacactcggtaaactcgtgtaaattcga 26856674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 32498042 - 32498110
Alignment:
Q  1 tttctagtaaactcgaaaggtttgacgagtttgaccgagttaacacttgataaactcttgtaaactcga 69  Q
    ||||||||||| ||| ||||||| |||  |||||  ||||||||||| | ||||||| |||||||||||    
T  32498042 tttctagtaaaatcggaaggtttaacggatttgattgagttaacactaggtaaactcgtgtaaactcga 32498110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 45; Significance: 1e-16; HSPs: 23)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 17 - 101
Target Start/End: Complemental strand, 38295751 - 38295667
Alignment:
Q  17 aaggtttgacgagtttgaccgagttaacacttgataaactcttgtaaactcgatcaagtttaccaagttttacgagtttacatct 101  Q
    ||||||||||||||||||||||||||||||| | ||||||| |||||||||||     ||||||||||||||| |||| ||||||    
T  38295751 aaggtttgacgagtttgaccgagttaacactcggtaaactcgtgtaaactcgactgtttttaccaagttttacaagttaacatct 38295667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 154 - 236
Target Start/End: Original strand, 42242200 - 42242283
Alignment:
Q  154 cttttctacaagcccaaagagtgaaacgctcactgaa-agttacatttacaataacacattcctgaaatgaaacgtttcttttt 236  Q
    |||||||||||||||||||| ||||||| | |||||| ||||| ||||||| |||||| ||||||||||||||| || ||||||    
T  42242200 cttttctacaagcccaaagactgaaacgtttactgaatagttatatttacagtaacacgttcctgaaatgaaacattgcttttt 42242283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 79
Target Start/End: Original strand, 40829688 - 40829766
Alignment:
Q  1 tttctagtaaactcgaaaggtttgacgagtttgaccgagttaacacttgataaactcttgtaaactcgatcaagtttac 79  Q
    ||||| ||||| | |||||||||||||| ||||||||||||||||||  |||||||| ||||||||||| | |||||||    
T  40829688 tttctggtaaaatagaaaggtttgacgaatttgaccgagttaacactcaataaactcatgtaaactcgaccgagtttac 40829766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 6224278 - 6224210
Alignment:
Q  1 tttctagtaaactcgaaaggtttgacgagtttgaccgagttaacacttgataaactcttgtaaactcga 69  Q
    ||||||||||| ||| ||||||| ||||||||||| ||||||||||| | ||||||| |||||||||||    
T  6224278 tttctagtaaaatcggaaggtttaacgagtttgactgagttaacactcggtaaactcatgtaaactcga 6224210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 155 - 247
Target Start/End: Original strand, 34342432 - 34342527
Alignment:
Q  155 ttttctacaagcccaaagagtgaaacgctcactgaa-agttacatttacaataacacatt---cctgaaatgaaacgtttctttttctctctgctcc 247  Q
    ||||||||||||| ||||| ||||||| | |||||| |||||| ||||||||||||| ||   ||||||||||||||||||||||||| ||| ||||    
T  34342432 ttttctacaagcc-aaagattgaaacgtttactgaatagttacctttacaataacacgttgttcctgaaatgaaacgtttctttttctttcttctcc 34342527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 25288664 - 25288732
Alignment:
Q  1 tttctagtaaactcgaaaggtttgacgagtttgaccgagttaacacttgataaactcttgtaaactcga 69  Q
    ||||||||||| ||| ||||||| ||| ||||||  ||||||||||| ||||||||| |||||||||||    
T  25288664 tttctagtaaaatcggaaggtttaacgggtttgattgagttaacactcgataaactcgtgtaaactcga 25288732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 2 - 69
Target Start/End: Complemental strand, 18727695 - 18727628
Alignment:
Q  2 ttctagtaaactcgaaaggtttgacgagtttgaccgagttaacacttgataaactcttgtaaactcga 69  Q
    |||| ||||| || ||| ||||||||||||| |||||||||||| | ||||||||| |||||||||||    
T  18727695 ttctggtaaaatcaaaaagtttgacgagtttcaccgagttaacattcgataaactcgtgtaaactcga 18727628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 18899977 - 18899931
Alignment:
Q  1 tttctagtaaactcgaaaggtttgacgagtttgaccgagttaacact 47  Q
    ||||||||||| ||| || ||||||||||||||||||||||||||||    
T  18899977 tttctagtaaaatcggaaagtttgacgagtttgaccgagttaacact 18899931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 17 - 63
Target Start/End: Original strand, 26789302 - 26789348
Alignment:
Q  17 aaggtttgacgagtttgaccgagttaacacttgataaactcttgtaa 63  Q
    ||||||| ||||||||||| ||||||||||||||||||||| |||||    
T  26789302 aaggtttaacgagtttgactgagttaacacttgataaactcgtgtaa 26789348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 154 - 238
Target Start/End: Complemental strand, 31847081 - 31846993
Alignment:
Q  154 cttttctacaagcccaaagagtgaaacgctcactgaa-agttacatttacaataacac---attcctgaaatgaaacgtttctttttct 238  Q
    |||||||||||||||||||| ||||||| | |||||| |||||| |||||| ||||||    ||| | |||||||||||||||||||||    
T  31847081 cttttctacaagcccaaagactgaaacgtttactgaatagttacttttacagtaacacgttgttcttaaaatgaaacgtttctttttct 31846993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 20 - 57
Target Start/End: Complemental strand, 35404349 - 35404312
Alignment:
Q  20 gtttgacgagtttgaccgagttaacacttgataaactc 57  Q
    |||||||||||||||||||||||||||| |||||||||    
T  35404349 gtttgacgagtttgaccgagttaacactcgataaactc 35404312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 57
Target Start/End: Original strand, 3991837 - 3991881
Alignment:
Q  13 tcgaaaggtttgacgagtttgaccgagttaacacttgataaactc 57  Q
    |||||| ||||||||||||||||||||||||||| || |||||||    
T  3991837 tcgaaaagtttgacgagtttgaccgagttaacacgtgttaaactc 3991881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 69
Target Start/End: Original strand, 43079007 - 43079059
Alignment:
Q  17 aaggtttgacgagtttgaccgagttaacacttgataaactcttgtaaactcga 69  Q
    ||||||| ||||||||||  ||||||||||| ||||||||| |||||||||||    
T  43079007 aaggtttaacgagtttgattgagttaacactcgataaactcgtgtaaactcga 43079059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 77
Target Start/End: Complemental strand, 2308757 - 2308687
Alignment:
Q  7 gtaaactcgaaaggtttgacgagtttgaccgagttaacacttgataaactcttgtaaactcgatcaagttt 77  Q
    ||||| || ||| ||||||| ||||||||| |||||||||| | |||| || ||||||||||||| |||||    
T  2308757 gtaaaatcaaaaagtttgacaagtttgaccaagttaacactcggtaaaatcgtgtaaactcgatcgagttt 2308687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 7027404 - 7027466
Alignment:
Q  1 tttctagtaaactcgaaaggtttgacgagtttgaccgagttaacacttgataaactcttgtaa 63  Q
    ||||| ||||| | ||||||||| ||||||||||| ||||||||||| | ||||||| |||||    
T  7027404 tttctggtaaaattgaaaggtttaacgagtttgactgagttaacactcggtaaactcgtgtaa 7027466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 20 - 57
Target Start/End: Original strand, 2103542 - 2103579
Alignment:
Q  20 gtttgacgagtttgaccgagttaacacttgataaactc 57  Q
    |||||| |||||||| ||||||||||||||||||||||    
T  2103542 gtttgatgagtttgagcgagttaacacttgataaactc 2103579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 20 - 57
Target Start/End: Original strand, 13898547 - 13898584
Alignment:
Q  20 gtttgacgagtttgaccgagttaacacttgataaactc 57  Q
    ||||||||||||||||||||||||||| || |||||||    
T  13898547 gtttgacgagtttgaccgagttaacacgtgttaaactc 13898584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 20 - 57
Target Start/End: Original strand, 14039164 - 14039201
Alignment:
Q  20 gtttgacgagtttgaccgagttaacacttgataaactc 57  Q
    ||||||||||||||||||||||||||| || |||||||    
T  14039164 gtttgacgagtttgaccgagttaacacgtgttaaactc 14039201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 20 - 57
Target Start/End: Original strand, 19948609 - 19948646
Alignment:
Q  20 gtttgacgagtttgaccgagttaacacttgataaactc 57  Q
    ||||||||||||||||||||||||||| || |||||||    
T  19948609 gtttgacgagtttgaccgagttaacacgtgttaaactc 19948646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 20 - 57
Target Start/End: Complemental strand, 38413484 - 38413447
Alignment:
Q  20 gtttgacgagtttgaccgagttaacacttgataaactc 57  Q
    ||||||||||||||||||||||||||| || |||||||    
T  38413484 gtttgacgagtttgaccgagttaacacgtgttaaactc 38413447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 20 - 57
Target Start/End: Original strand, 41978908 - 41978945
Alignment:
Q  20 gtttgacgagtttgaccgagttaacacttgataaactc 57  Q
    ||||||||||||||||||||||||||| || |||||||    
T  41978908 gtttgacgagtttgaccgagttaacacgtgttaaactc 41978945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 11153399 - 11153343
Alignment:
Q  1 tttctagtaaactcgaaaggtttgacgagtttgaccgagttaacacttgataaactc 57  Q
    ||||| ||||| |||| | ||||| ||||||||||||||||||||| || |||||||    
T  11153399 tttctggtaaaatcgagatgtttggcgagtttgaccgagttaacacgtgttaaactc 11153343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 65
Target Start/End: Complemental strand, 31847251 - 31847203
Alignment:
Q  17 aaggtttgacgagtttgaccgagttaacacttgataaactcttgtaaac 65  Q
    ||||||||||||||| |||||| |||||||| | ||||||| |||||||    
T  31847251 aaggtttgacgagttcgaccgaattaacactcggtaaactcgtgtaaac 31847203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 154 - 238
Target Start/End: Original strand, 89470 - 89558
Alignment:
Q  154 cttttctacaagcccaaagagtgaaacgctcactgaa-agttacatttacaataacacatt---cctgaaatgaaacgtttctttttct 238  Q
    ||||| |||||||||||||| ||||||| | |||||| |||||| ||||||||||||||||   | |||||||||||||||||||||||    
T  89470 cttttttacaagcccaaagactgaaacgtttactgaatagttacctttacaataacacattgttcttgaaatgaaacgtttctttttct 89558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0383 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0383
Description:

Target: scaffold0383; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 16730 - 16664
Alignment:
Q  1 tttctagtaaactcgaaaggtttgacgagtttgaccgagttaacacttgataaactcttgtaaactc 67  Q
    ||||| ||||| ||||||||||| ||||||||||| ||||||||||||| |||||||  ||||||||    
T  16730 tttctggtaaaatcgaaaggtttaacgagtttgactgagttaacacttggtaaactcgggtaaactc 16664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0152 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: scaffold0152
Description:

Target: scaffold0152; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 20966 - 20900
Alignment:
Q  1 tttctagtaaactcgaaaggtttgacgagtttgaccgagttaacacttgataaactcttgtaaactc 67  Q
    ||||| ||||| ||||||||||| ||||||||||| ||||||||||||| |||||||  ||||||||    
T  20966 tttctggtaaaatcgaaaggtttaacgagtttgactgagttaacacttggtaaactcgggtaaactc 20900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0152; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 28835 - 28901
Alignment:
Q  1 tttctagtaaactcgaaaggtttgacgagtttgaccgagttaacacttgataaactcttgtaaactc 67  Q
    ||||| ||||| ||||||||||| ||||||||||| ||||||||||||| |||||||  ||||||||    
T  28835 tttctggtaaaatcgaaaggtttaacgagtttgactgagttaacacttggtaaactcgggtaaactc 28901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.000000000006; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 20 - 68
Target Start/End: Complemental strand, 33892872 - 33892824
Alignment:
Q  20 gtttgacgagtttgaccgagttaacacttgataaactcttgtaaactcg 68  Q
    ||||||||||||||||||||||||||| || ||||||| ||||||||||    
T  33892872 gtttgacgagtttgaccgagttaacacgtgttaaactcgtgtaaactcg 33892824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 37798169 - 37798113
Alignment:
Q  1 tttctagtaaactcgaaaggtttgacgagtttgaccgagttaacacttgataaactc 57  Q
    ||||| ||||| |||||| |||||||||||||||||||||||||||| | |||||||    
T  37798169 tttctggtaaaatcgaaaagtttgacgagtttgaccgagttaacactcggtaaactc 37798113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 37014355 - 37014417
Alignment:
Q  1 tttctagtaaactcgaaaggtttgacgagtttgaccgagttaacacttgataaactcttgtaa 63  Q
    ||||| ||||| | ||||||||| ||||||||||||||||||||||| | ||||||| |||||    
T  37014355 tttctggtaaaattgaaaggtttaacgagtttgaccgagttaacactcggtaaactcgtgtaa 37014417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 4240167 - 4240099
Alignment:
Q  1 tttctagtaaactcgaaaggtttgacgagtttgaccgagttaacacttgataaactcttgtaaactcga 69  Q
    ||||| ||||| ||| ||||||| |||||||||||  |||||||||| | ||||||| |||||||||||    
T  4240167 tttctggtaaaatcggaaggtttaacgagtttgacaaagttaacactcggtaaactcgtgtaaactcga 4240099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 7125214 - 7125118
Alignment:
Q  1 tttctagtaaactcgaaaggtttgacgagtttgaccgagttaacacttgataaactcttgtaaactcgatcaagtttaccaagttttacgagtttac 97  Q
    ||||| ||||| ||| || ||||||||||||||||||||||||||||   ||||||| |||||| |||  | ||||||||   |||| |||||||||    
T  7125214 tttctggtaaaatcggaaagtttgacgagtttgaccgagttaacactcagtaaactcgtgtaaaatcgggcgagtttaccgttttttgcgagtttac 7125118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 57
Target Start/End: Complemental strand, 21238802 - 21238752
Alignment:
Q  7 gtaaactcgaaaggtttgacgagtttgaccgagttaacacttgataaactc 57  Q
    ||||| ||| || ||||||||||||||||||||||||||| || |||||||    
T  21238802 gtaaaatcggaaagtttgacgagtttgaccgagttaacacatgttaaactc 21238752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 13 - 46
Target Start/End: Complemental strand, 2675111 - 2675078
Alignment:
Q  13 tcgaaaggtttgacgagtttgaccgagttaacac 46  Q
    |||||| |||||||||||||||||||||||||||    
T  2675111 tcgaaaagtttgacgagtttgaccgagttaacac 2675078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 15 - 64
Target Start/End: Complemental strand, 5651222 - 5651173
Alignment:
Q  15 gaaaggtttgacgagtttgaccgagttaacacttgataaactcttgtaaa 64  Q
    |||| ||||||||||||||||||||||||||||   ||||||| ||||||    
T  5651222 gaaaagtttgacgagtttgaccgagttaacactcagtaaactcgtgtaaa 5651173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 77
Target Start/End: Complemental strand, 29716824 - 29716764
Alignment:
Q  17 aaggtttgacgagtttgaccgagttaacacttgataaactcttgtaaactcgatcaagttt 77  Q
    ||||||||||||||| || || || |||||||| ||||||| ||||||||| ||| |||||    
T  29716824 aaggtttgacgagttggatcgggtgaacacttggtaaactcgtgtaaactcaatcgagttt 29716764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1128 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold1128
Description:

Target: scaffold1128; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 953 - 888
Alignment:
Q  1 tttctagtaaactcgaaaggtttgacgagtttgaccgagttaacacttgataaactcttgtaaact 66  Q
    ||||| ||||| ||| || |||||| ||||||||||||||||||||||  ||||||| ||||||||    
T  953 tttctggtaaaatcggaaagtttgatgagtttgaccgagttaacacttagtaaactcgtgtaaact 888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0573 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0573
Description:

Target: scaffold0573; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 60 - 101
Target Start/End: Original strand, 8948 - 8989
Alignment:
Q  60 gtaaactcgatcaagtttaccaagttttacgagtttacatct 101  Q
    |||||||||| | |||||||||||||||||||||||||||||    
T  8948 gtaaactcgaccgagtttaccaagttttacgagtttacatct 8989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0246 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0246
Description:

Target: scaffold0246; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 68
Target Start/End: Original strand, 1438 - 1486
Alignment:
Q  20 gtttgacgagtttgaccgagttaacacttgataaactcttgtaaactcg 68  Q
    ||||||||||||| ||||||||||||| || ||||||| ||||||||||    
T  1438 gtttgacgagtttaaccgagttaacacgtgttaaactcgtgtaaactcg 1486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0421 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0421
Description:

Target: scaffold0421; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 56
Target Start/End: Original strand, 1770 - 1806
Alignment:
Q  20 gtttgacgagtttgaccgagttaacacttgataaact 56  Q
    ||||||||||||||||||||||||||| || ||||||    
T  1770 gtttgacgagtttgaccgagttaacacgtgttaaact 1806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0042 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0042
Description:

Target: scaffold0042; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 57765 - 57697
Alignment:
Q  1 tttctagtaaactcgaaaggtttgacgagtttgaccgagttaacacttgataaactcttgtaaactcga 69  Q
    ||||||||||| ||  ||||||| | ||||||||  ||||||||||| | ||||||| |||||||||||    
T  57765 tttctagtaaaatcagaaggtttaatgagtttgattgagttaacactcggtaaactcgtgtaaactcga 57697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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