View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19240_low_32 (Length: 245)

Name: NF19240_low_32
Description: NF19240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19240_low_32
NF19240_low_32
[»] chr3 (5 HSPs)
chr3 (1-229)||(53630970-53631198)
chr3 (16-147)||(36598555-36598686)
chr3 (18-126)||(15488657-15488765)
chr3 (18-130)||(31516682-31516794)
chr3 (34-89)||(15495421-15495476)
[»] chr4 (3 HSPs)
chr4 (1-147)||(4458792-4458940)
chr4 (19-160)||(18541898-18542040)
chr4 (18-119)||(4459651-4459752)
[»] chr1 (3 HSPs)
chr1 (18-130)||(10644705-10644816)
chr1 (1-120)||(31461334-31461453)
chr1 (10-113)||(31472883-31472986)
[»] chr6 (1 HSPs)
chr6 (18-130)||(31278550-31278666)
[»] chr5 (3 HSPs)
chr5 (25-127)||(14538865-14538967)
chr5 (10-55)||(41870630-41870675)
chr5 (39-119)||(7137215-7137295)
[»] chr8 (1 HSPs)
chr8 (29-150)||(42268780-42268901)


Alignment Details
Target: chr3 (Bit Score: 213; Significance: 1e-117; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 53630970 - 53631198
Alignment:
Q  1 tttgacgtcttatctaaattctcccaattttttggatcataactatctaaatgagcaatttcaatattagatgcatttggtacatcatcgtcgagatagg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  53630970 tttgacgtcttatctaaattctcccaattttttggatcataactatctaaatgagcaatttcaatattagatgcatttggtacatcatcatcgagatagg 53631069  T
Q  101 agacgaaggatttcgcacccttgatgtgttatgttgattttgcgtttctgcagagttttcgtttcttagttttgttgtattgtgttaaagtttgctaacg 200  Q
    |||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53631070 agacaaaggatttcgcacccttgatgtgttatgctgattttgcgtttctgcagagttttcgtttcttagttttgttgtattgtgttaaagtttgctaacg 53631169  T
Q  201 ttttgaatagctatacaaactcccttttg 229  Q
    |||||||||||||||||||| ||||||||    
T  53631170 ttttgaatagctatacaaacccccttttg 53631198  T

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Target: chr3; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 16 - 147
Target Start/End: Complemental strand, 36598686 - 36598555
Alignment:
Q  16 aaattctcccaattttttggatcataactatctaaatgagcaatttcaatattagatgcatttggtacatcatcgtcgagataggagacgaaggatttcg 115  Q
    ||||||||| ||||| ||| ||||||| ||| |||||||||||||||||||||||||| ||||| |||||||||  | |||| |||||||||| |||       
T  36598686 aaattctccaaatttcttgtatcataaatatttaaatgagcaatttcaatattagatgtatttgatacatcatcaccaagattggagacgaagaattggt 36598587  T
Q  116 cacccttgatgtgttatgttgattttgcgttt 147  Q
    |||| |||||||||| |  |||||||| ||||    
T  36598586 caccattgatgtgtttttctgattttgtgttt 36598555  T

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Target: chr3; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 18 - 126
Target Start/End: Original strand, 15488657 - 15488765
Alignment:
Q  18 attctcccaattttttggatcataactatctaaatgagcaatttcaatattagatgcatttggtacatcatcgtcgagataggagacgaaggatttcgca 117  Q
    ||||||||||||| | ||||||||| |||| ||||||| ||||||||||||||||||||||   ||||||||  | |||| | ||||||||||||| |||    
T  15488657 attctcccaatttctcggatcataaatatcaaaatgaggaatttcaatattagatgcatttaacacatcatcaccaagattgcagacgaaggatttggca 15488756  T
Q  118 cccttgatg 126  Q
    || ||||||    
T  15488757 ccattgatg 15488765  T

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Target: chr3; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 18 - 130
Target Start/End: Original strand, 31516682 - 31516794
Alignment:
Q  18 attctcccaattttttggatcataactatctaaatgagcaatttcaatattagatgcatttggtacatcatcgtcgagataggagacgaaggatttcgca 117  Q
    ||||||| ||||| ||||||||||| |||  ||||||||||||| ||||| |||||||||||| ||||| || || |||| |||||||||| ||||   |    
T  31516682 attctccgaatttcttggatcataaatattaaaatgagcaattttaatatcagatgcatttggcacatcgtcatcaagattggagacgaagaatttgata 31516781  T
Q  118 cccttgatgtgtt 130  Q
    | |||||||||||    
T  31516782 ctcttgatgtgtt 31516794  T

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Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 34 - 89
Target Start/End: Original strand, 15495421 - 15495476
Alignment:
Q  34 ggatcataactatctaaatgagcaatttcaatattagatgcatttggtacatcatc 89  Q
    ||||||||| |||| ||| ||| ||||| |||||||||||||||||| ||||||||    
T  15495421 ggatcataaatatcaaaacgagaaatttaaatattagatgcatttggcacatcatc 15495476  T

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Target: chr4 (Bit Score: 66; Significance: 3e-29; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 147
Target Start/End: Complemental strand, 4458940 - 4458792
Alignment:
Q  1 tttgacgtcttatctaaattctcccaattttttggatcataactatctaaatgagcaatttcaatattagatgcatttggtacatcatcgtcgagatagg 100  Q
    |||||||| ||||| | |||||||||||||  || ||||||| |||| || ||||||||||||||||| ||||||||||| ||||||||| | ||||| |    
T  4458940 tttgacgtgttatcgagattctcccaatttcatgaatcataaatatcaaattgagcaatttcaatattggatgcatttggcacatcatcgccaagatatg 4458841  T
Q  101 agacgaaggatttcgcacccttgat--gtgttatgttgattttgcgttt 147  Q
    ||||||||||||| |||||||||||  || |||| || |||||||||||    
T  4458840 agacgaaggatttggcacccttgatacgttttattttcattttgcgttt 4458792  T

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Target: chr4; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 19 - 160
Target Start/End: Original strand, 18541898 - 18542040
Alignment:
Q  19 ttctcccaattttttggatcataactatctaaatgagcaatttcaatattagatgcatttggtacatcatcgtcgagataggagacgaaggatttcgcac 118  Q
    |||| ||||||| ||||||||||| |||  |||||||| |||||||||||||||| |||||| ||||||||  | |||| ||||| ||||||||| ||||    
T  18541898 ttcttccaatttcttggatcataaatattaaaatgagctatttcaatattagatg-atttggcacatcatcaccaagattggagatgaaggatttggcac 18541996  T
Q  119 ccttgatgtgttatgttgat--tttgcgtttctgcagagttttc 160  Q
    ||||||||| || | | |||  |||||||||||| |||||||||    
T  18541997 ccttgatgtcttttttcgatcgtttgcgtttctgtagagttttc 18542040  T

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Target: chr4; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 18 - 119
Target Start/End: Original strand, 4459651 - 4459752
Alignment:
Q  18 attctcccaattttttggatcataactatctaaatgagcaatttcaatattagatgcatttggtacatcatcgtcgagataggagacgaaggatttcgca 117  Q
    |||||||||||||  |||||||||  |||| |||||||||||||||||||||||||||||||| ||||||||    ||||||||||| |||| ||| |||    
T  4459651 attctcccaatttcatggatcatatatatcaaaatgagcaatttcaatattagatgcatttggcacatcatcactaagataggagacaaagggtttggca 4459750  T
Q  118 cc 119  Q
    ||    
T  4459751 cc 4459752  T

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Target: chr1 (Bit Score: 49; Significance: 4e-19; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 18 - 130
Target Start/End: Original strand, 10644705 - 10644816
Alignment:
Q  18 attctcccaattttttggatcataactatctaaatgagcaatttcaatattagatgcatttggtacatcatcgtcgagataggagacgaaggatttcgca 117  Q
    |||||||  |||| ||||||||||| |||  ||||||||||||||||||||||||||||||||  |||||||  | |||| |||||| ||| |||| |||    
T  10644705 attctcctcatttcttggatcataaatattaaaatgagcaatttcaatattagatgcatttgg-ccatcatcaccaagattggagacaaagaatttggca 10644803  T
Q  118 cccttgatgtgtt 130  Q
    |||||||||||||    
T  10644804 cccttgatgtgtt 10644816  T

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Target: chr1; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 120
Target Start/End: Original strand, 31461334 - 31461453
Alignment:
Q  1 tttgacgtcttatctaaattctcccaattttttggatcataactatctaaatgagcaatttcaatattagatgcatttggtacatcatcgtcgagatagg 100  Q
    ||||| || ||||| ||||||||| ||||| | ||||||||| |||  ||||||||||||| |||||||||||||||||| ||||||||    |||| ||    
T  31461334 tttgatgtgttatcaaaattctccaaatttctcggatcataaatattaaaatgagcaattttaatattagatgcatttggcacatcatcaagaagattgg 31461433  T
Q  101 agacgaaggatttcgcaccc 120  Q
    ||||||| ||||| ||||||    
T  31461434 agacgaaagatttggcaccc 31461453  T

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Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 10 - 113
Target Start/End: Original strand, 31472883 - 31472986
Alignment:
Q  10 ttatctaaattctcccaattttttggatcataactatctaaatgagcaatttcaatattagatgcatttggtacatcatcgtcgagataggagacgaagg 109  Q
    ||||| ||||||||| ||||| | ||||| ||| |||  |||||||||||||||||||| ||| | ||||| ||||||||  | |||| |||||||||||    
T  31472883 ttatcaaaattctccaaatttgtcggatcttaaatattaaaatgagcaatttcaatatttgatacctttggcacatcatcaccaagattggagacgaagg 31472982  T
Q  110 attt 113  Q
    ||||    
T  31472983 attt 31472986  T

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Target: chr6 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 18 - 130
Target Start/End: Complemental strand, 31278666 - 31278550
Alignment:
Q  18 attctcccaattttttggatcataactatctaaatgagcaatttcaatattagatgcat----ttggtacatcatcgtcgagataggagacgaaggattt 113  Q
    ||||||| ||||| ||| ||||||| |||  ||||||||||||||||||||||||||||    |||| ||||||||  | ||||| ||||||||||||||    
T  31278666 attctccaaatttcttgaatcataaatattaaaatgagcaatttcaatattagatgcatttaattggcacatcatcaccaagatatgagacgaaggattt 31278567  T
Q  114 cgcacccttgatgtgtt 130  Q
     |||||||| |||||||    
T  31278566 ggcacccttaatgtgtt 31278550  T

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Target: chr5 (Bit Score: 47; Significance: 6e-18; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 25 - 127
Target Start/End: Complemental strand, 14538967 - 14538865
Alignment:
Q  25 caattttttggatcataactatctaaatgagcaatttcaatattagatgcatttggtacatcatcgtcgagataggagacgaaggatttcgcacccttga 124  Q
    |||||| ||||||||||  |||| ||||||| ||||||||||||||||||||||||| |||||||  | |||||||||  ||||||| |  |||||||||    
T  14538967 caatttcttggatcatacatatcaaaatgagaaatttcaatattagatgcatttggtccatcatcaccaagataggaggggaaggatctgacacccttga 14538868  T
Q  125 tgt 127  Q
    |||    
T  14538867 tgt 14538865  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 10 - 55
Target Start/End: Complemental strand, 41870675 - 41870630
Alignment:
Q  10 ttatctaaattctcccaattttttggatcataactatctaaatgag 55  Q
    ||||| ||||||||||||||| ||||||||||| |||| |||||||    
T  41870675 ttatcaaaattctcccaatttgttggatcataaatatcaaaatgag 41870630  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 119
Target Start/End: Original strand, 7137215 - 7137295
Alignment:
Q  39 ataactatctaaatgagcaatttcaatattagatgcatttggtacatcatcgtcgagataggagacgaaggatttcgcacc 119  Q
    |||| |||| ||||||| |||||||||||||||||||||  | ||||||||  | | |||| |||||||| |||| |||||    
T  7137215 ataaatatcaaaatgagtaatttcaatattagatgcattcagcacatcatcacctatatagaagacgaagaatttggcacc 7137295  T

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Target: chr8 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 29 - 150
Target Start/End: Complemental strand, 42268901 - 42268780
Alignment:
Q  29 tttttggatcataactatctaaatgagcaatttcaatattagatgcatttggtacatcatcgtcgagataggagacgaaggatttcgcacccttgatgtg 128  Q
    |||||||||||||| |||| ||| ||  |||||||||||||||||||||||  ||||||||    ||||| |||||||||||||| |||| ||||||| |    
T  42268901 tttttggatcataaatatcaaaacgataaatttcaatattagatgcatttgacacatcatcactaagatatgagacgaaggatttggcactcttgatgcg 42268802  T
Q  129 ttatgttgattttgcgtttctg 150  Q
    || | || |||||||| |||||    
T  42268801 ttttttttattttgcgattctg 42268780  T

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