View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19240_low_34 (Length: 244)

Name: NF19240_low_34
Description: NF19240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19240_low_34
NF19240_low_34
[»] chr7 (9 HSPs)
chr7 (10-244)||(43499832-43500065)
chr7 (66-99)||(7211861-7211894)
chr7 (38-99)||(11016954-11017015)
chr7 (66-99)||(17272700-17272733)
chr7 (56-94)||(29681895-29681933)
chr7 (66-104)||(32315703-32315741)
chr7 (41-99)||(42628383-42628441)
chr7 (61-94)||(17272826-17272859)
chr7 (38-99)||(24532799-24532859)
[»] chr4 (12 HSPs)
chr4 (11-99)||(31846869-31846957)
chr4 (10-97)||(31012121-31012208)
chr4 (54-95)||(32008357-32008398)
chr4 (38-99)||(53937892-53937953)
chr4 (40-99)||(54613025-54613084)
chr4 (38-99)||(46321440-46321501)
chr4 (61-94)||(31012254-31012287)
chr4 (38-95)||(37055633-37055690)
chr4 (38-99)||(42375095-42375156)
chr4 (38-99)||(47661927-47661988)
chr4 (56-97)||(53261213-53261253)
chr4 (57-93)||(39336414-39336450)
[»] chr2 (11 HSPs)
chr2 (11-99)||(39819055-39819143)
chr2 (38-99)||(6722036-6722097)
chr2 (66-99)||(7755337-7755370)
chr2 (14-89)||(12918535-12918610)
chr2 (64-98)||(5095752-5095786)
chr2 (13-95)||(5913521-5913602)
chr2 (61-94)||(12918660-12918693)
chr2 (38-99)||(16514509-16514570)
chr2 (61-94)||(39819190-39819223)
chr2 (56-92)||(12918508-12918544)
chr2 (66-94)||(13421813-13421841)
[»] chr5 (10 HSPs)
chr5 (15-99)||(29385367-29385451)
chr5 (11-99)||(1839963-1840051)
chr5 (11-99)||(19417437-19417525)
chr5 (38-99)||(16971229-16971290)
chr5 (11-99)||(7137633-7137721)
chr5 (38-105)||(30117814-30117881)
chr5 (38-99)||(2953275-2953336)
chr5 (38-99)||(3899924-3899985)
chr5 (38-99)||(4376448-4376509)
chr5 (7-64)||(9177919-9177976)
[»] chr1 (18 HSPs)
chr1 (11-99)||(9379810-9379898)
chr1 (11-99)||(6539637-6539725)
chr1 (11-99)||(9884833-9884921)
chr1 (7-99)||(10449522-10449613)
chr1 (66-99)||(28739437-28739470)
chr1 (38-99)||(48993909-48993970)
chr1 (38-98)||(29371453-29371513)
chr1 (55-99)||(44938916-44938960)
chr1 (42-92)||(44381917-44381967)
chr1 (66-99)||(718983-719016)
chr1 (70-99)||(28045320-28045349)
chr1 (61-94)||(28045446-28045479)
chr1 (66-99)||(44801885-44801918)
chr1 (61-94)||(50754851-50754884)
chr1 (66-94)||(10449454-10449482)
chr1 (38-74)||(17127581-17127617)
chr1 (38-94)||(37155043-37155099)
chr1 (38-94)||(49200063-49200119)
[»] chr8 (4 HSPs)
chr8 (7-99)||(31470737-31470828)
chr8 (38-104)||(5033246-5033312)
chr8 (38-99)||(33841583-33841644)
chr8 (38-99)||(35440961-35441022)
[»] chr3 (9 HSPs)
chr3 (11-95)||(20286900-20286984)
chr3 (38-98)||(29081592-29081652)
chr3 (56-99)||(49159501-49159544)
chr3 (66-99)||(11512388-11512421)
chr3 (66-99)||(22894023-22894056)
chr3 (38-99)||(45103101-45103162)
chr3 (66-99)||(48342209-48342242)
chr3 (61-94)||(22893898-22893931)
chr3 (66-99)||(29081723-29081756)
[»] scaffold0343 (1 HSPs)
scaffold0343 (7-99)||(12281-12370)
[»] scaffold0161 (1 HSPs)
scaffold0161 (40-94)||(27217-27271)
[»] scaffold1315 (1 HSPs)
scaffold1315 (66-95)||(1818-1847)
[»] scaffold1293 (1 HSPs)
scaffold1293 (66-95)||(224-253)
[»] scaffold0016 (1 HSPs)
scaffold0016 (38-99)||(49695-49756)
[»] chr6 (4 HSPs)
chr6 (66-99)||(369439-369472)
chr6 (61-94)||(2543742-2543775)
chr6 (66-95)||(2543867-2543896)
chr6 (66-94)||(16193853-16193881)


Alignment Details
Target: chr7 (Bit Score: 191; Significance: 1e-104; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 10 - 244
Target Start/End: Complemental strand, 43500065 - 43499832
Alignment:
Q  10 attgtgaaagaaaaagcagaatgtcatatgtgacattgtgattagtcaatatcactaatgtcaccaaccacaatgtcacccaagtgctacacgtcaaaat 109  Q
    |||||||||||||||| ||||||||||||||||||||||||||   |||||||||||||||||||||||||||||| |||||| || |||||||||||||    
T  43500065 attgtgaaagaaaaagaagaatgtcatatgtgacattgtgattgaccaatatcactaatgtcaccaaccacaatgttacccaaatgttacacgtcaaaat 43499966  T
Q  110 cctagcagcccttgctcatattatgagtgggagataccgcctatcatgtgcttgaaccgatatggttttgagggtcatgatgggcttgtgtggtttgcct 209  Q
    |||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  43499965 cctagcagct-ttgctcatattatgagtgggagataccgcctatcatgtgcttgaaccgatatggttttgtgggtcatgatgggcttgtgtggtttgcct 43499867  T
Q  210 tccgtttgtgtcatcagggttgcatagcttctgtt 244  Q
    |||||||||||||||||||||||||||||||||||    
T  43499866 tccgtttgtgtcatcagggttgcatagcttctgtt 43499832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 66 - 99
Target Start/End: Complemental strand, 7211894 - 7211861
Alignment:
Q  66 aatgtcaccaaccacaatgtcacccaagtgctac 99  Q
    ||||||||||||||||||||||||||||||||||    
T  7211894 aatgtcaccaaccacaatgtcacccaagtgctac 7211861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 38 - 99
Target Start/End: Original strand, 11016954 - 11017015
Alignment:
Q  38 tgtgacattgtgattagtcaatatcactaatgtcaccaaccacaatgtcacccaagtgctac 99  Q
    ||||||||||||||| |||||| |||| ||||||||| | | | ||||||||||||||||||    
T  11016954 tgtgacattgtgattggtcaatgtcaccaatgtcacccaactctatgtcacccaagtgctac 11017015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 66 - 99
Target Start/End: Complemental strand, 17272733 - 17272700
Alignment:
Q  66 aatgtcaccaaccacaatgtcacccaagtgctac 99  Q
    ||||||||||||||||||||||||||||||||||    
T  17272733 aatgtcaccaaccacaatgtcacccaagtgctac 17272700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 56 - 94
Target Start/End: Original strand, 29681895 - 29681933
Alignment:
Q  56 caatatcactaatgtcaccaaccacaatgtcacccaagt 94  Q
    |||| |||| |||||||||||||||||||||||||||||    
T  29681895 caatgtcaccaatgtcaccaaccacaatgtcacccaagt 29681933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 104
Target Start/End: Complemental strand, 32315741 - 32315703
Alignment:
Q  66 aatgtcaccaaccacaatgtcacccaagtgctacacgtc 104  Q
    ||||||||||||||||||||||| ||||||||| |||||    
T  32315741 aatgtcaccaaccacaatgtcacgcaagtgctatacgtc 32315703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 41 - 99
Target Start/End: Original strand, 42628383 - 42628441
Alignment:
Q  41 gacattgtgattagtcaatatcactaatgtcaccaaccacaatgtcacccaagtgctac 99  Q
    |||||||||||| | ||||||||| ||||||||| | | | ||||||||||||||||||    
T  42628383 gacattgtgattggccaatatcaccaatgtcacccaactctatgtcacccaagtgctac 42628441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 61 - 94
Target Start/End: Original strand, 17272826 - 17272859
Alignment:
Q  61 tcactaatgtcaccaaccacaatgtcacccaagt 94  Q
    |||| |||||||||||||||||||||||||||||    
T  17272826 tcaccaatgtcaccaaccacaatgtcacccaagt 17272859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 38 - 99
Target Start/End: Original strand, 24532799 - 24532859
Alignment:
Q  38 tgtgacattgtgattagtcaatatcactaatgtcaccaaccacaatgtcacccaagtgctac 99  Q
    |||||||||||| ||  ||||| |||| | |||||||||||||||||| |||||||||||||    
T  24532799 tgtgacattgtggttgatcaatgtcac-agtgtcaccaaccacaatgttacccaagtgctac 24532859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 57; Significance: 6e-24; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 11 - 99
Target Start/End: Original strand, 31846869 - 31846957
Alignment:
Q  11 ttgtgaaagaaaaagcagaatgtcatatgtgacattgtgattagtcaatatcactaatgtcaccaaccacaatgtcacccaagtgctac 99  Q
    ||||||||||||||| |||| | || ||||||||||||| || | ||||||||| ||||||||||||||||||||||||||||||||||    
T  31846869 ttgtgaaagaaaaagaagaaagccacatgtgacattgtggttggccaatatcaccaatgtcaccaaccacaatgtcacccaagtgctac 31846957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 10 - 97
Target Start/End: Complemental strand, 31012208 - 31012121
Alignment:
Q  10 attgtgaaagaaaaagcagaatgtcatatgtgacattgtgattagtcaatatcactaatgtcaccaaccacaatgtcacccaagtgct 97  Q
    |||||||||||||||| | || |||| ||||||||||||| || |||||| |||| | | ||||||||||||||||||| ||||||||    
T  31012208 attgtgaaagaaaaagaaaaaagtcacatgtgacattgtggttggtcaatgtcaccattatcaccaaccacaatgtcacacaagtgct 31012121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 54 - 95
Target Start/End: Original strand, 32008357 - 32008398
Alignment:
Q  54 gtcaatatcactaatgtcaccaaccacaatgtcacccaagtg 95  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  32008357 gtcaatatcactaatgtcaccaaccacaatgtcacccaagtg 32008398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 38 - 99
Target Start/End: Complemental strand, 53937953 - 53937892
Alignment:
Q  38 tgtgacattgtgattagtcaatatcactaatgtcaccaaccacaatgtcacccaagtgctac 99  Q
    |||||||||||| || |||||||||||||||||||| ||||||||||| || ||||||||||    
T  53937953 tgtgacattgtggttggtcaatatcactaatgtcactaaccacaatgttactcaagtgctac 53937892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 40 - 99
Target Start/End: Complemental strand, 54613084 - 54613025
Alignment:
Q  40 tgacattgtgattagtcaatatcactaatgtcaccaaccacaatgtcacccaagtgctac 99  Q
    |||||||||| || ||||||  ||||||||||||||||||||||||||||||||| ||||    
T  54613084 tgacattgtggttggtcaatgccactaatgtcaccaaccacaatgtcacccaagttctac 54613025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 38 - 99
Target Start/End: Original strand, 46321440 - 46321501
Alignment:
Q  38 tgtgacattgtgattagtcaatatcactaatgtcaccaaccacaatgtcacccaagtgctac 99  Q
    |||||||||||| || |||||| |||| ||| ||||||||||||||||||| ||||||||||    
T  46321440 tgtgacattgtggttggtcaatgtcaccaatatcaccaaccacaatgtcactcaagtgctac 46321501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 61 - 94
Target Start/End: Original strand, 31012254 - 31012287
Alignment:
Q  61 tcactaatgtcaccaaccacaatgtcacccaagt 94  Q
    ||||||||||||||||||||||||||||| ||||    
T  31012254 tcactaatgtcaccaaccacaatgtcacctaagt 31012287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 38 - 95
Target Start/End: Complemental strand, 37055690 - 37055633
Alignment:
Q  38 tgtgacattgtgattagtcaatatcactaatgtcaccaaccacaatgtcacccaagtg 95  Q
    ||||| |||||| || ||||||||||||||||||||||| |||  ||||| |||||||    
T  37055690 tgtgagattgtggttggtcaatatcactaatgtcaccaatcacgctgtcatccaagtg 37055633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 38 - 99
Target Start/End: Original strand, 42375095 - 42375156
Alignment:
Q  38 tgtgacattgtgattagtcaatatcactaatgtcaccaaccacaatgtcacccaagtgctac 99  Q
    |||||||||||||||  ||||| |||| ||||||||| | | | ||||||||||||||||||    
T  42375095 tgtgacattgtgattgatcaatgtcaccaatgtcacccaactctatgtcacccaagtgctac 42375156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 38 - 99
Target Start/End: Original strand, 47661927 - 47661988
Alignment:
Q  38 tgtgacattgtgattagtcaatatcactaatgtcaccaaccacaatgtcacccaagtgctac 99  Q
    ||||||||||||||| |||||| |||| ||||||||| | | | ||||||||||| ||||||    
T  47661927 tgtgacattgtgattggtcaatgtcaccaatgtcacccaactctatgtcacccaaatgctac 47661988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 56 - 97
Target Start/End: Original strand, 53261213 - 53261253
Alignment:
Q  56 caatatcactaatgtcaccaaccacaatgtcacccaagtgct 97  Q
    ||||||||| |||||||||||||||||| |||||||||||||    
T  53261213 caatatcac-aatgtcaccaaccacaatttcacccaagtgct 53261253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 57 - 93
Target Start/End: Original strand, 39336414 - 39336450
Alignment:
Q  57 aatatcactaatgtcaccaaccacaatgtcacccaag 93  Q
    |||||||| |||||||||||||||||||||| |||||    
T  39336414 aatatcacaaatgtcaccaaccacaatgtcatccaag 39336450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 53; Significance: 2e-21; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 11 - 99
Target Start/End: Complemental strand, 39819143 - 39819055
Alignment:
Q  11 ttgtgaaagaaaaagcagaatgtcatatgtgacattgtgattagtcaatatcactaatgtcaccaaccacaatgtcacccaagtgctac 99  Q
    ||||||||||||||| |||| | || ||||||||||||| || | |||| |||| ||||||||||||||||||||||||||||||||||    
T  39819143 ttgtgaaagaaaaagaagaaagccacatgtgacattgtggttggccaatgtcaccaatgtcaccaaccacaatgtcacccaagtgctac 39819055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 38 - 99
Target Start/End: Original strand, 6722036 - 6722097
Alignment:
Q  38 tgtgacattgtgattagtcaatatcactaatgtcaccaaccacaatgtcacccaagtgctac 99  Q
    ||||||||||||||| | ||||||||||||||||| | | | | ||||||||||||||||||    
T  6722036 tgtgacattgtgattggccaatatcactaatgtcaaccaactctatgtcacccaagtgctac 6722097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 66 - 99
Target Start/End: Complemental strand, 7755370 - 7755337
Alignment:
Q  66 aatgtcaccaaccacaatgtcacccaagtgctac 99  Q
    ||||||||||||||||||||||||||||||||||    
T  7755370 aatgtcaccaaccacaatgtcacccaagtgctac 7755337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 14 - 89
Target Start/End: Complemental strand, 12918610 - 12918535
Alignment:
Q  14 tgaaagaaaaagcagaatgtcatatgtgacattgtgattagtcaatatcactaatgtcaccaaccacaatgtcacc 89  Q
    |||||||||||| | || | || ||||||||||||| || | |||| |||| ||||||| ||||||||||||||||    
T  12918610 tgaaagaaaaagaaaaaagccacatgtgacattgtggttggccaatgtcaccaatgtcatcaaccacaatgtcacc 12918535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 64 - 98
Target Start/End: Complemental strand, 5095786 - 5095752
Alignment:
Q  64 ctaatgtcaccaaccacaatgtcacccaagtgcta 98  Q
    |||||||||||||||||||| ||||||||||||||    
T  5095786 ctaatgtcaccaaccacaatatcacccaagtgcta 5095752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 95
Target Start/End: Complemental strand, 5913602 - 5913521
Alignment:
Q  13 gtgaaagaaaaagcagaatgtcatatgtgacattgtgattagtcaatatcactaatgtcaccaaccacaatgtcacccaagtg 95  Q
    |||||||| |||| |||| | ||| ||| | |||||| || | |||| |||| ||||||||||||||||||||||||||||||    
T  5913602 gtgaaagagaaagaagaaagacatttgtaagattgtggttggccaatgtcac-aatgtcaccaaccacaatgtcacccaagtg 5913521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 61 - 94
Target Start/End: Original strand, 12918660 - 12918693
Alignment:
Q  61 tcactaatgtcaccaaccacaatgtcacccaagt 94  Q
    |||| |||||||||||||||||||||||||||||    
T  12918660 tcaccaatgtcaccaaccacaatgtcacccaagt 12918693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 38 - 99
Target Start/End: Original strand, 16514509 - 16514570
Alignment:
Q  38 tgtgacattgtgattagtcaatatcactaatgtcaccaaccacaatgtcacccaagtgctac 99  Q
    ||||||||||||||| |||||| |||| ||| ||||| | | | ||||||||||||||||||    
T  16514509 tgtgacattgtgattggtcaatgtcaccaatctcacccaactctatgtcacccaagtgctac 16514570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 61 - 94
Target Start/End: Original strand, 39819190 - 39819223
Alignment:
Q  61 tcactaatgtcaccaaccacaatgtcacccaagt 94  Q
    |||| |||||||||||||||||||||||||||||    
T  39819190 tcaccaatgtcaccaaccacaatgtcacccaagt 39819223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 92
Target Start/End: Complemental strand, 12918544 - 12918508
Alignment:
Q  56 caatatcactaatgtcaccaaccacaatgtcacccaa 92  Q
    |||| |||| |||||||||||||||||||||||||||    
T  12918544 caatgtcaccaatgtcaccaaccacaatgtcacccaa 12918508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 66 - 94
Target Start/End: Original strand, 13421813 - 13421841
Alignment:
Q  66 aatgtcaccaaccacaatgtcacccaagt 94  Q
    |||||||||||||||||||||||||||||    
T  13421813 aatgtcaccaaccacaatgtcacccaagt 13421841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 49; Significance: 4e-19; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 15 - 99
Target Start/End: Original strand, 29385367 - 29385451
Alignment:
Q  15 gaaagaaaaagcagaatgtcatatgtgacattgtgattagtcaatatcactaatgtcaccaaccacaatgtcacccaagtgctac 99  Q
    ||||||||||| |||| | || ||||||||||||| || | |||| |||| ||||||||||||||||||||||||||||||||||    
T  29385367 gaaagaaaaagaagaaagccacatgtgacattgtggttggccaatgtcaccaatgtcaccaaccacaatgtcacccaagtgctac 29385451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 11 - 99
Target Start/End: Complemental strand, 1840051 - 1839963
Alignment:
Q  11 ttgtgaaagaaaaagcagaatgtcatatgtgacattgtgattagtcaatatcactaatgtcaccaaccacaatgtcacccaagtgctac 99  Q
    ||||||||||||||| |||| | || ||||||||||||| || | |||| |||  ||||||||||||||||||||||||||| ||||||    
T  1840051 ttgtgaaagaaaaagaagaaagccacatgtgacattgtggttggccaatgtcatcaatgtcaccaaccacaatgtcacccaattgctac 1839963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 11 - 99
Target Start/End: Complemental strand, 19417525 - 19417437
Alignment:
Q  11 ttgtgaaagaaaaagcagaatgtcatatgtgacattgtgattagtcaatatcactaatgtcaccaaccacaatgtcacccaagtgctac 99  Q
    |||||||||||||   |||| |||| ||||||||||||  ||   |||| |||| ||||||||||||||||||||||||||||||||||    
T  19417525 ttgtgaaagaaaagaaagaaagtcacatgtgacattgtagttgaccaatgtcaccaatgtcaccaaccacaatgtcacccaagtgctac 19417437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 38 - 99
Target Start/End: Original strand, 16971229 - 16971290
Alignment:
Q  38 tgtgacattgtgattagtcaatatcactaatgtcaccaaccacaatgtcacccaagtgctac 99  Q
    ||||||||||||||| |||||| |||| ||||||||| | | | ||||||||||||||||||    
T  16971229 tgtgacattgtgattggtcaatgtcaccaatgtcacccaactctatgtcacccaagtgctac 16971290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 11 - 99
Target Start/End: Complemental strand, 7137721 - 7137633
Alignment:
Q  11 ttgtgaaagaaaaagcagaatgtcatatgtgacattgtgattagtcaatatcactaatgtcaccaaccacaatgtcacccaagtgctac 99  Q
    |||||||||| || | |||| ||||  |||||||||||| || |||||| |||| ||| ||||||||  ||||||||||||||| ||||    
T  7137721 ttgtgaaagagaatgaagaaagtcacttgtgacattgtggttggtcaatgtcaccaatttcaccaactgcaatgtcacccaagtactac 7137633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 38 - 105
Target Start/End: Complemental strand, 30117881 - 30117814
Alignment:
Q  38 tgtgacattgtgattagtcaatatcactaatgtcaccaaccacaatgtcacccaagtgctacacgtca 105  Q
    ||||||||||||||| ||||||||||| ||||||||| | | | || |||||||| |||||| |||||    
T  30117881 tgtgacattgtgattggtcaatatcaccaatgtcacccaactctatatcacccaaatgctacccgtca 30117814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 38 - 99
Target Start/End: Original strand, 2953275 - 2953336
Alignment:
Q  38 tgtgacattgtgattagtcaatatcactaatgtcaccaaccacaatgtcacccaagtgctac 99  Q
    ||||||||||||||| | |||| |||| ||||||||| | | | ||||||||||||||||||    
T  2953275 tgtgacattgtgattggccaatgtcaccaatgtcacccaactctatgtcacccaagtgctac 2953336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 38 - 99
Target Start/End: Original strand, 3899924 - 3899985
Alignment:
Q  38 tgtgacattgtgattagtcaatatcactaatgtcaccaaccacaatgtcacccaagtgctac 99  Q
    ||||||||||||||| |||||| |||| ||||||||| | | | | ||||||||||||||||    
T  3899924 tgtgacattgtgattggtcaatgtcaccaatgtcacccaactctaagtcacccaagtgctac 3899985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 38 - 99
Target Start/End: Original strand, 4376448 - 4376509
Alignment:
Q  38 tgtgacattgtgattagtcaatatcactaatgtcaccaaccacaatgtcacccaagtgctac 99  Q
    |||||||||||  || |||| | |||| ||||||| ||||||||||||||| ||||||||||    
T  4376448 tgtgacattgttgttggtcattgtcaccaatgtcatcaaccacaatgtcactcaagtgctac 4376509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 7 - 64
Target Start/End: Original strand, 9177919 - 9177976
Alignment:
Q  7 aatattgtgaaagaaaaagcagaatgtcatatgtgacattgtgattagtcaatatcac 64  Q
    ||||||||||||||||||| |||| |||| |||||| |||||| || | |||||||||    
T  9177919 aatattgtgaaagaaaaagaagaaagtcacatgtgatattgtggttggccaatatcac 9177976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 49; Significance: 4e-19; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 11 - 99
Target Start/End: Complemental strand, 9379898 - 9379810
Alignment:
Q  11 ttgtgaaagaaaaagcagaatgtcatatgtgacattgtgattagtcaatatcactaatgtcaccaaccacaatgtcacccaagtgctac 99  Q
    ||||||||||||||| |||| | || ||||||||||||| || | ||||||||| ||||||||||||||| || |||||||||||||||    
T  9379898 ttgtgaaagaaaaagaagaaagccacatgtgacattgtggttggccaatatcaccaatgtcaccaaccacgatatcacccaagtgctac 9379810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 11 - 99
Target Start/End: Original strand, 6539637 - 6539725
Alignment:
Q  11 ttgtgaaagaaaaagcagaatgtcatatgtgacattgtgattagtcaatatcactaatgtcaccaaccacaatgtcacccaagtgctac 99  Q
    ||||||||||||||| |||| |||| ||||||||||||| ||   |||| |||| ||| ||| ||||||||||||||||||||||||||    
T  6539637 ttgtgaaagaaaaagaagaaagtcacatgtgacattgtggttgaccaatgtcaccaatatcatcaaccacaatgtcacccaagtgctac 6539725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 11 - 99
Target Start/End: Complemental strand, 9884921 - 9884833
Alignment:
Q  11 ttgtgaaagaaaaagcagaatgtcatatgtgacattgtgattagtcaatatcactaatgtcaccaaccacaatgtcacccaagtgctac 99  Q
    ||||||||||||||| |||| | || ||||||||||||| ||   |||| |||| ||||||||||||||| |||||||| |||||||||    
T  9884921 ttgtgaaagaaaaagaagaaagccacatgtgacattgtggttgaccaatgtcaccaatgtcaccaaccactatgtcaccaaagtgctac 9884833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 7 - 99
Target Start/End: Original strand, 10449522 - 10449613
Alignment:
Q  7 aatattgtgaaagaaaaagcagaatgtcatatgtgacattgtgattagtcaatatcactaatgtcaccaaccacaatgtcacccaagtgctac 99  Q
    |||||||||||||| |||| |||| |  || |||||||||||| ||   |||| |||| |||||||||||||||||||||| |||||||||||    
T  10449522 aatattgtgaaagagaaagaagaaagatatttgtgacattgtggttgaccaatgtcac-aatgtcaccaaccacaatgtcatccaagtgctac 10449613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 66 - 99
Target Start/End: Original strand, 28739437 - 28739470
Alignment:
Q  66 aatgtcaccaaccacaatgtcacccaagtgctac 99  Q
    ||||||||||||||||||||||||||||||||||    
T  28739437 aatgtcaccaaccacaatgtcacccaagtgctac 28739470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 38 - 99
Target Start/End: Complemental strand, 48993970 - 48993909
Alignment:
Q  38 tgtgacattgtgattagtcaatatcactaatgtcaccaaccacaatgtcacccaagtgctac 99  Q
    ||||||||||||||| |||||| |||| ||||||||| | | | ||||||||||||||||||    
T  48993970 tgtgacattgtgattggtcaatgtcaccaatgtcacccaactctatgtcacccaagtgctac 48993909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 38 - 98
Target Start/End: Original strand, 29371453 - 29371513
Alignment:
Q  38 tgtgacattgtgattagtcaatatcactaatgtcaccaaccacaatgtcacccaagtgcta 98  Q
    ||||||||||||||| ||||||||||| ||||||||| | | | ||||||| |||||||||    
T  29371453 tgtgacattgtgattggtcaatatcaccaatgtcacctagctctatgtcacacaagtgcta 29371513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 55 - 99
Target Start/End: Original strand, 44938916 - 44938960
Alignment:
Q  55 tcaatatcactaatgtcaccaaccacaatgtcacccaagtgctac 99  Q
    ||||| ||||||||||||| || ||||||||||||||||||||||    
T  44938916 tcaatgtcactaatgtcactaatcacaatgtcacccaagtgctac 44938960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 42 - 92
Target Start/End: Complemental strand, 44381967 - 44381917
Alignment:
Q  42 acattgtgattagtcaatatcactaatgtcaccaaccacaatgtcacccaa 92  Q
    |||||||| || |||||| |||| ||| |||||||||||||||||||||||    
T  44381967 acattgtggttggtcaatgtcaccaatatcaccaaccacaatgtcacccaa 44381917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 66 - 99
Target Start/End: Complemental strand, 719016 - 718983
Alignment:
Q  66 aatgtcaccaaccacaatgtcacccaagtgctac 99  Q
    ||||||||||||||||||||||| ||||||||||    
T  719016 aatgtcaccaaccacaatgtcactcaagtgctac 718983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 70 - 99
Target Start/End: Complemental strand, 28045349 - 28045320
Alignment:
Q  70 tcaccaaccacaatgtcacccaagtgctac 99  Q
    ||||||||||||||||||||||||||||||    
T  28045349 tcaccaaccacaatgtcacccaagtgctac 28045320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 61 - 94
Target Start/End: Original strand, 28045446 - 28045479
Alignment:
Q  61 tcactaatgtcaccaaccacaatgtcacccaagt 94  Q
    |||| |||||||||||||||||||||||||||||    
T  28045446 tcaccaatgtcaccaaccacaatgtcacccaagt 28045479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 66 - 99
Target Start/End: Original strand, 44801885 - 44801918
Alignment:
Q  66 aatgtcaccaaccacaatgtcacccaagtgctac 99  Q
    |||||||||||||||||||||| |||||||||||    
T  44801885 aatgtcaccaaccacaatgtcatccaagtgctac 44801918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 61 - 94
Target Start/End: Original strand, 50754851 - 50754884
Alignment:
Q  61 tcactaatgtcaccaaccacaatgtcacccaagt 94  Q
    |||| |||||||||||||||||||||||||||||    
T  50754851 tcaccaatgtcaccaaccacaatgtcacccaagt 50754884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 66 - 94
Target Start/End: Complemental strand, 10449482 - 10449454
Alignment:
Q  66 aatgtcaccaaccacaatgtcacccaagt 94  Q
    |||||||||||||||||||||||||||||    
T  10449482 aatgtcaccaaccacaatgtcacccaagt 10449454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 74
Target Start/End: Complemental strand, 17127617 - 17127581
Alignment:
Q  38 tgtgacattgtgattagtcaatatcactaatgtcacc 74  Q
    ||||||||||||||| |||||| ||||||||||||||    
T  17127617 tgtgacattgtgattggtcaatgtcactaatgtcacc 17127581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 94
Target Start/End: Complemental strand, 37155099 - 37155043
Alignment:
Q  38 tgtgacattgtgattagtcaatatcactaatgtcaccaaccacaatgtcacccaagt 94  Q
    ||||||||||||||| | |||| |||| ||||||||||| | | |||||||||||||    
T  37155099 tgtgacattgtgattggccaatgtcaccaatgtcaccaaactctatgtcacccaagt 37155043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 94
Target Start/End: Original strand, 49200063 - 49200119
Alignment:
Q  38 tgtgacattgtgattagtcaatatcactaatgtcaccaaccacaatgtcacccaagt 94  Q
    |||||||||||| || |||||| |||  ||| |||||||||||||||||||| ||||    
T  49200063 tgtgacattgtggttggtcaatgtcatcaatatcaccaaccacaatgtcacctaagt 49200119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 7 - 99
Target Start/End: Complemental strand, 31470828 - 31470737
Alignment:
Q  7 aatattgtgaaagaaaaagcagaatgtcatatgtgacattgtgattagtcaatatcactaatgtcaccaaccacaatgtcacccaagtgctac 99  Q
    ||||||||||||||||||| ||||||  |  |||||||||||| || |||||| |||| ||||| |||||||| ||||||||||||| |||||    
T  31470828 aatattgtgaaagaaaaagaagaatgatacttgtgacattgtggttggtcaatgtcac-aatgttaccaaccataatgtcacccaagcgctac 31470737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 38 - 104
Target Start/End: Original strand, 5033246 - 5033312
Alignment:
Q  38 tgtgacattgtgattagtcaatatcactaatgtcaccaaccacaatgtcacccaagtgctacacgtc 104  Q
    ||||||||||||||| |||||| |||| ||||||||| | | | |||||||||||||||||| ||||    
T  5033246 tgtgacattgtgattggtcaatgtcaccaatgtcacccaactctatgtcacccaagtgctacccgtc 5033312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 38 - 99
Target Start/End: Complemental strand, 33841644 - 33841583
Alignment:
Q  38 tgtgacattgtgattagtcaatatcactaatgtcaccaaccacaatgtcacccaagtgctac 99  Q
    ||||||| ||||||| |||||| |||| ||||||||| | | | ||||||||||||||||||    
T  33841644 tgtgacaatgtgattggtcaatgtcaccaatgtcacccaactctatgtcacccaagtgctac 33841583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 38 - 99
Target Start/End: Complemental strand, 35441022 - 35440961
Alignment:
Q  38 tgtgacattgtgattagtcaatatcactaatgtcaccaaccacaatgtcacccaagtgctac 99  Q
    ||||||||||||||| |||||| |||| ||||||||| | | | | ||||||||||||||||    
T  35441022 tgtgacattgtgattggtcaatgtcaccaatgtcacccaactctaagtcacccaagtgctac 35440961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.000000000005; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 11 - 95
Target Start/End: Complemental strand, 20286984 - 20286900
Alignment:
Q  11 ttgtgaaagaaaaagcagaatgtcatatgtgacattgtgattagtcaatatcactaatgtcaccaaccacaatgtcacccaagtg 95  Q
    |||| |||||||||| |||| | || ||||||||||||| || | |||| |||  |||||||||||||| |||||||||||||||    
T  20286984 ttgtaaaagaaaaagaagaaagccacatgtgacattgtggttggccaatgtcatcaatgtcaccaaccataatgtcacccaagtg 20286900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 38 - 98
Target Start/End: Complemental strand, 29081652 - 29081592
Alignment:
Q  38 tgtgacattgtgattagtcaatatcactaatgtcaccaaccacaatgtcacccaagtgcta 98  Q
    |||||||||||| || |||||| ||||  |||||||||||||||||||||||||| |||||    
T  29081652 tgtgacattgtggttggtcaatgtcaccgatgtcaccaaccacaatgtcacccaaatgcta 29081592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 56 - 99
Target Start/End: Original strand, 49159501 - 49159544
Alignment:
Q  56 caatatcactaatgtcaccaaccacaatgtcacccaagtgctac 99  Q
    |||| |||| ||||||||||||||||||||||||||||||||||    
T  49159501 caatgtcaccaatgtcaccaaccacaatgtcacccaagtgctac 49159544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 66 - 99
Target Start/End: Complemental strand, 11512421 - 11512388
Alignment:
Q  66 aatgtcaccaaccacaatgtcacccaagtgctac 99  Q
    ||||||||||||||||||||||||||||||||||    
T  11512421 aatgtcaccaaccacaatgtcacccaagtgctac 11512388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 66 - 99
Target Start/End: Original strand, 22894023 - 22894056
Alignment:
Q  66 aatgtcaccaaccacaatgtcacccaagtgctac 99  Q
    ||||||||||||||||||||||||||||||||||    
T  22894023 aatgtcaccaaccacaatgtcacccaagtgctac 22894056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 38 - 99
Target Start/End: Complemental strand, 45103162 - 45103101
Alignment:
Q  38 tgtgacattgtgattagtcaatatcactaatgtcaccaaccacaatgtcacccaagtgctac 99  Q
    |||||||||||||||  |||||||||| ||||||||| | | | ||||||||||||||||||    
T  45103162 tgtgacattgtgattgatcaatatcaccaatgtcacccaactctatgtcacccaagtgctac 45103101  T

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Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 66 - 99
Target Start/End: Complemental strand, 48342242 - 48342209
Alignment:
Q  66 aatgtcaccaaccacaatgtcacccaagtgctac 99  Q
    ||||||||||||||||||||||||||||||||||    
T  48342242 aatgtcaccaaccacaatgtcacccaagtgctac 48342209  T

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Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 61 - 94
Target Start/End: Complemental strand, 22893931 - 22893898
Alignment:
Q  61 tcactaatgtcaccaaccacaatgtcacccaagt 94  Q
    |||| |||||||||||||||||||||||||||||    
T  22893931 tcaccaatgtcaccaaccacaatgtcacccaagt 22893898  T

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Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 66 - 99
Target Start/End: Original strand, 29081723 - 29081756
Alignment:
Q  66 aatgtcaccaaccacaatgtcacccaagtgctac 99  Q
    |||||||||||||||||| |||||||||||||||    
T  29081723 aatgtcaccaaccacaatatcacccaagtgctac 29081756  T

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Target: scaffold0343 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0343
Description:

Target: scaffold0343; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 7 - 99
Target Start/End: Original strand, 12281 - 12370
Alignment:
Q  7 aatattgtgaaagaaaaagcagaatgtcatatgtgacattgtgattagtcaatatcactaatgtcaccaaccacaatgtcacccaagtgctac 99  Q
    |||||||||||||| |||| |||| | ||  |||||||||||| || |||||| |||| ||||||| |  |||||||||||||||||||||||    
T  12281 aatattgtgaaagagaaagaagaaggacacttgtgacattgtggttggtcaatgtcac-aatgtcagc--ccacaatgtcacccaagtgctac 12370  T

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Target: scaffold0161 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0161
Description:

Target: scaffold0161; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 94
Target Start/End: Complemental strand, 27271 - 27217
Alignment:
Q  40 tgacattgtgattagtcaatatcactaatgtcaccaaccacaatgtcacccaagt 94  Q
    ||||||||||||| | ||||||||||||||||||| | | | |||||||||||||    
T  27271 tgacattgtgattggccaatatcactaatgtcacccaactctatgtcacccaagt 27217  T

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Target: scaffold1315 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold1315
Description:

Target: scaffold1315; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 66 - 95
Target Start/End: Complemental strand, 1847 - 1818
Alignment:
Q  66 aatgtcaccaaccacaatgtcacccaagtg 95  Q
    ||||||||||||||||||||||||||||||    
T  1847 aatgtcaccaaccacaatgtcacccaagtg 1818  T

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Target: scaffold1293 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold1293
Description:

Target: scaffold1293; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 66 - 95
Target Start/End: Original strand, 224 - 253
Alignment:
Q  66 aatgtcaccaaccacaatgtcacccaagtg 95  Q
    ||||||||||||||||||||||||||||||    
T  224 aatgtcaccaaccacaatgtcacccaagtg 253  T

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Target: scaffold0016 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 38 - 99
Target Start/End: Complemental strand, 49756 - 49695
Alignment:
Q  38 tgtgacattgtgattagtcaatatcactaatgtcaccaaccacaatgtcacccaagtgctac 99  Q
    ||||||||||||||| |||||| |||  ||||||||| | | | ||||||||||||||||||    
T  49756 tgtgacattgtgattggtcaatgtcatcaatgtcacccaactctatgtcacccaagtgctac 49695  T

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Target: chr6 (Bit Score: 30; Significance: 0.00000008; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 66 - 99
Target Start/End: Complemental strand, 369472 - 369439
Alignment:
Q  66 aatgtcaccaaccacaatgtcacccaagtgctac 99  Q
    ||||||| ||||||||||||||||||||||||||    
T  369472 aatgtcatcaaccacaatgtcacccaagtgctac 369439  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 61 - 94
Target Start/End: Complemental strand, 2543775 - 2543742
Alignment:
Q  61 tcactaatgtcaccaaccacaatgtcacccaagt 94  Q
    |||| |||||||||||||||||||||||||||||    
T  2543775 tcaccaatgtcaccaaccacaatgtcacccaagt 2543742  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 66 - 95
Target Start/End: Original strand, 2543867 - 2543896
Alignment:
Q  66 aatgtcaccaaccacaatgtcacccaagtg 95  Q
    ||||||||||||||||||||||||||||||    
T  2543867 aatgtcaccaaccacaatgtcacccaagtg 2543896  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 66 - 94
Target Start/End: Original strand, 16193853 - 16193881
Alignment:
Q  66 aatgtcaccaaccacaatgtcacccaagt 94  Q
    |||||||||||||||||||||||||||||    
T  16193853 aatgtcaccaaccacaatgtcacccaagt 16193881  T

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