View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19240_low_35 (Length: 242)
Name: NF19240_low_35
Description: NF19240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19240_low_35 |
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Alignment Details
Target: chr1 (Bit Score: 169; Significance: 9e-91; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 48 - 224
Target Start/End: Original strand, 28844428 - 28844604
Alignment:
| Q |
48 |
ccacatcgttatactttgtgatggactagctcgtaaaatttatcatttcctttctttcaaacacttatatatgtttataccaaaagataattcaaattta |
147 |
Q |
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| T |
28844428 |
ccacatcgttatactttgtgatggactagctcgtaaaatttatcatttcctttctttcaaacacttgtatatgtttataccaaaagataatttaaattta |
28844527 |
T |
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| Q |
148 |
attcaaacacatccttatattgtataggtacgcatggccctcaaacatccttctcatgcacgatttagtggtgaagg |
224 |
Q |
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| T |
28844528 |
attcaaacacatccttatattgtataggtacgcatggccctcaaacatccttctcatgcacgatttagtggtgaagg |
28844604 |
T |
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