View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19240_low_38 (Length: 239)

Name: NF19240_low_38

Description: NF19240

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF19240_low_38

[»] chr7 (2 HSPs)

Target: chr7 (Bit Score: 141; Significance: 5e-74; HSPs: 2)

Name: chr7

Description:

Target: chr7; HSP #1

Raw Score: 141; E-Value: 5e-74

Query Start/End: Original strand, 16 - 160

Target Start/End: Complemental strand, 42751400 - 42751256

Alignment:

Q	16	taaaaagtaatcatgatacttctagtgtggtatctaggtacgtcgtactttttggagtacatgagcttcatgatatgatcaagcatgtcattttatcctt	115	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	42751400	taaaaagtaatcatgatacttctagtgtggtatctagatacgtcgtactttttggagtacatgagcttcatgatatgatcaagcatgtcattttatcctt	42751301	T

Q	116	ataagtcctctccactaaaataattttattcgggtgtatttatta	160	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	42751300	ataagtcctctccactaaaataattttattcgggtgtatttatta	42751256	T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2

Raw Score: 62; E-Value: 6e-27

Query Start/End: Original strand, 152 - 221

Target Start/End: Complemental strand, 42750942 - 42750873

Alignment:

Q	152	tatttattaaccaaaattcatacatgttgtggaagtctaatccctaatgctagatccaatttgcattgat	221	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	42750942	tatttattaaccaaaattcatacatgttgtggaagtctaattcctaatgctggatccaatttgcattgat	42750873	T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]