View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19240_low_4 (Length: 512)

Name: NF19240_low_4
Description: NF19240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19240_low_4
NF19240_low_4
[»] chr1 (2 HSPs)
chr1 (11-512)||(14392016-14392517)
chr1 (450-484)||(14391877-14391911)


Alignment Details
Target: chr1 (Bit Score: 417; Significance: 0; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 417; E-Value: 0
Query Start/End: Original strand, 11 - 512
Target Start/End: Complemental strand, 14392517 - 14392016
Alignment:
Q  11 cataggtacgtcttgagttgttggcatttggcagaggaataatcttggtaaagataaaagatataaatttgatcctataattttagatttggccagactc 110  Q
    |||||||||||||||||||||||||||||| | |||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  14392517 cataggtacgtcttgagttgttggcatttgacggaggaacaatcatggtaaagataaaagatataaatttgatcctataattttagatttggccaaactc 14392418  T
Q  111 aaaatttaaattactacctccgtccatgttgnnnnnnntatttggacaaaccgtgaaaaaattatttgcacattaagggtgtgatttggcaagtttgact 210  Q
    |||||||||||||||||||||||||||||||       ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  14392417 aaaatttaaattactacctccgtccatgttgaaaaatatatttggacaaaccgtgaaaaaactatttgcacattaagggtgtgatttggcaagtttgact 14392318  T
Q  211 cagcaatataaaaacatcatcttattaatctctaacccaaaaataaggggttataaaacctcgtctcctccttgcataattcatcttcgtcctccatctt 310  Q
    || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  14392317 caacaatataaaaacatcatcttattaatctctaacccaaaaataaggggttataaaacctcgtctcctccttgtataattcatcttcgtcctccatctt 14392218  T
Q  311 cttcttcatttattcacttcatcttgttcagcgctagagaatcttgctcgaatcgcaaaagcaatgaaaatctaaaatcggtgcaaacttgcccgaacca 410  Q
    ||||||||||||||||||||||| |||||||| |||||||||||||||||||||||| ||||||||||||||||| |||||||||||| ||||||||| |    
T  14392217 cttcttcatttattcacttcatcatgttcagcactagagaatcttgctcgaatcgcagaagcaatgaaaatctaatatcggtgcaaacctgcccgaacta 14392118  T
Q  411 ggaagtaactaagattcaaatctaaaatcattacttcaagatgaagagggagttgttgtttatttttgacttaaggatgtaactaagaatcatcagtaat 510  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||    
T  14392117 ggaagtaactaagattcaaatctaaaatcattacttcaagatgaagagggagttgttgtttatttttgacttaagggtgtaactaagaatcattagtaat 14392018  T
Q  511 ga 512  Q
    ||    
T  14392017 ga 14392016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 450 - 484
Target Start/End: Complemental strand, 14391911 - 14391877
Alignment:
Q  450 gatgaagagggagttgttgtttatttttgacttaa 484  Q
    ||||||||||||||| |||||||||||||||||||    
T  14391911 gatgaagagggagttattgtttatttttgacttaa 14391877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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