View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19240_low_43 (Length: 231)
Name: NF19240_low_43
Description: NF19240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19240_low_43 |
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Alignment Details
Target: chr2 (Bit Score: 124; Significance: 6e-64; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 17 - 218
Target Start/End: Complemental strand, 44158260 - 44158051
Alignment:
| Q |
17 |
ggtattttgatcaatttggttgggtgggagcgaaatttattgggagaataaaagaattccaatttctttagtaggtatcatgggcggatctggcctcaca |
116 |
Q |
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| T |
44158260 |
ggtattttggtcaatttggttgggtgggagcgaaatttgttggaagaagagaagaattccaatttctttagtaggtatcatgggtgcatctggcctcaca |
44158161 |
T |
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| Q |
117 |
aaacaagtgaggtacaattttttgtaggtatgcatcaatggc-------tccgtaa-tttttgagtgacaatttctttagtgtatatatattatttctca |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| | |||| |||||||| ||||||||||||||||||||||||| |||||||| |
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| T |
44158160 |
aaacaagtgaggtacaattttttgtaggtatgcatcaatggcggagccatgagtaattttttgagcgacaatttctttagtgtatatatatcatttctca |
44158061 |
T |
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| Q |
209 |
caataattat |
218 |
Q |
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|||| |||| |
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| T |
44158060 |
taatatttat |
44158051 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 175 - 218
Target Start/End: Complemental strand, 3548483 - 3548440
Alignment:
| Q |
175 |
gacaatttctttagtgtatatatattatttctcacaataattat |
218 |
Q |
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| T |
3548483 |
gacaatttctttagtgtgtatatattatttctcacaatagttat |
3548440 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 177 - 218
Target Start/End: Complemental strand, 13503972 - 13503931
Alignment:
| Q |
177 |
caatttctttagtgtatatatattatttctcacaataattat |
218 |
Q |
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| T |
13503972 |
caatttctttagtgtatatatattattactcacaataattat |
13503931 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 177 - 218
Target Start/End: Original strand, 50205384 - 50205425
Alignment:
| Q |
177 |
caatttctttagtgtatatatattatttctcacaataattat |
218 |
Q |
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| T |
50205384 |
caatttctttagtgtatatatattatttctcaaaataattat |
50205425 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 175 - 218
Target Start/End: Complemental strand, 19465576 - 19465533
Alignment:
| Q |
175 |
gacaatttctttagtgtatatatattatttctcacaataattat |
218 |
Q |
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| T |
19465576 |
gacaatttctttagtgtgtatatattatttctaaaaataattat |
19465533 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 185 - 218
Target Start/End: Complemental strand, 27001623 - 27001590
Alignment:
| Q |
185 |
ttagtgtatatatattatttctcacaataattat |
218 |
Q |
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| T |
27001623 |
ttagtgtatatatattatttatcacaataattat |
27001590 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 178 - 217
Target Start/End: Complemental strand, 1536688 - 1536649
Alignment:
| Q |
178 |
aatttctttagtgtatatatattatttctcacaataatta |
217 |
Q |
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| T |
1536688 |
aatttctttagtgtatatatattatttctcaaaataatta |
1536649 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 12 - 66
Target Start/End: Original strand, 24504208 - 24504262
Alignment:
| Q |
12 |
gcataggtattttgatcaatttggttgggtgggagcgaaatttattgggagaata |
66 |
Q |
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|||| ||||||||||||||||||||||||||||||| ||| || |||| |||||| |
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| T |
24504208 |
gcatgggtattttgatcaatttggttgggtgggagcaaaacttgttggaagaata |
24504262 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 101 - 145
Target Start/End: Original strand, 3603973 - 3604017
Alignment:
| Q |
101 |
cggatctggcctcacaaaacaagtgaggtacaattttttgtaggt |
145 |
Q |
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| T |
3603973 |
cggacctggcctcacaaaacaagtgaggcacaattttttgcaggt |
3604017 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 17 - 64
Target Start/End: Original strand, 19200045 - 19200092
Alignment:
| Q |
17 |
ggtattttgatcaatttggttgggtgggagcgaaatttattgggagaa |
64 |
Q |
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| T |
19200045 |
ggtattttgatcagtttggttgggtgggagcaaaacttgttgggagaa |
19200092 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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