View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19240_low_44 (Length: 228)
Name: NF19240_low_44
Description: NF19240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19240_low_44 |
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Alignment Details
Target: chr5 (Bit Score: 174; Significance: 9e-94; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 39 - 212
Target Start/End: Complemental strand, 3125763 - 3125590
Alignment:
| Q |
39 |
tagaattgattaatgatattctttcgttttgtcccagtagcattttcacattgactttgcgaagcaacaaaatagaagttttgaatgagcccgacactga |
138 |
Q |
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| T |
3125763 |
tagaattgattaatgatattctttcgttttgtcccagtagcattttcacattgactttgcgaagcaacaaaatagaagttttgaatgagcccgacactga |
3125664 |
T |
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| Q |
139 |
tttacaaaaatagccaaatacacacacaattcattcaaaatcaattttcgtcactgtatcaccaacgacacacg |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3125663 |
tttacaaaaatagccaaatacacacacaattcattcaaaatcaattttcgtcactgtatcaccaacgacacacg |
3125590 |
T |
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